Ggra2747.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra2747.t1
Unique NameGgra2747.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length445
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000005_piloncontigtig00000005_pilon:1417804..1419138 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005705774.1
PFAMsMur_ligase_C,Mur_ligase_M
Max annot lvl2759|Eukaryota
KEGG rclassRC00064,RC00162
KEGG koko:K20457
KEGG ReactionR02237
KEGG Pathwayko00790,ko01100,map00790,map01100
KEGG ModuleM00126
GOsGO:0000003,GO:0003006,GO:0003674,GO:0003824,GO:0004326,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005759,GO:0006082,GO:0006575,GO:0006725,GO:0006732,GO:0006760,GO:0006761,GO:0006807,GO:0007275,GO:0008150,GO:0008152,GO:0008841,GO:0009058,GO:0009108,GO:0009396,GO:0009790,GO:0009791,GO:0009793,GO:0009987,GO:0010154,GO:0016053,GO:0016874,GO:0016879,GO:0016881,GO:0018130,GO:0019438,GO:0019752,GO:0022414,GO:0031974,GO:0032501,GO:0032502,GO:0034641,GO:0042398,GO:0042558,GO:0042559,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043436,GO:0043603,GO:0043604,GO:0043648,GO:0043650,GO:0044237,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0046394,GO:0046452,GO:0046483,GO:0046900,GO:0046901,GO:0048316,GO:0048608,GO:0048731,GO:0048856,GO:0051186,GO:0051188,GO:0061458,GO:0070013,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576
Evalue7.77e-66
EggNOG OGsCOG0285@1|root,KOG2525@2759|Eukaryota
EC6.3.2.12
Descriptiontetrahydrofolylpolyglutamate synthase activity
COG categoryH
BRITEko00000,ko00001,ko00002,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra2747Ggra2747Gracilaria gracilis GNS1m malegenetig00000005_pilon 1417804..1419138 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2747.t1.stop1Ggra2747.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000005_pilon 1417804..1417806 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2747.t1.CDS1Ggra2747.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000005_pilon 1417804..1419138 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2747.t1.exon1Ggra2747.t1.exon1Gracilaria gracilis GNS1m maleexontig00000005_pilon 1417804..1419138 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2747.t1.start1Ggra2747.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000005_pilon 1419136..1419138 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2747.t1Ggra2747.t1Gracilaria gracilis GNS1m malepolypeptidetig00000005_pilon 1417804..1419138 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra2747.t1 ID=Ggra2747.t1|Name=Ggra2747.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=445bp
MSFIRPFQGAKKHSSELRQLLHRLENLVDWETRRRKSPHGHLLMRVSAVP
AKKLLDRLGNPQNSFRAVHVSGSKGKGSVATLISAGLRDAPFIDAPVGTY
TSPHVEDVNERMRVNGVPIADDLLKRSLEQVLQARERPPLMQEATWFDVI
SATGLLSLHYSKVKWAVVEVGMGGRLDSTNVLSAPVSVITNIHHEHADVI
GPTLQDIAYEKAGIIAPSSHCICGLDGNDQLAHIFAAEAAGVSPKATVHF
CPPAPGSSLFDRNLQLARKALEHVAHLEGSPHLSGEAMLPRHLAISALAQ
LPARSERFQVACAGSTVSVLLDGAHTEESVAQVLLEARSERKPVVVLGLG
EDKNRDAICRVVACAAAKVFATSAGESGKYVSPTELGRTLQELNVASATI
DVAEDALRAAIQEASANATNLVVLGSFYLAGRLRPKLREMHVQK*
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spliced messenger RNA

>Ggra2747.t1 ID=Ggra2747.t1|Name=Ggra2747.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1335bp|location=Sequence derived from alignment at tig00000005_pilon:1417804..1419138- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGTTTCATCCGCCCTTTCCAAGGCGCCAAGAAACACTCTTCTGAACT
CCGCCAGTTGCTACATCGACTTGAAAATCTAGTTGATTGGGAAACTCGGC
GGCGTAAAAGCCCTCATGGGCACCTTTTGATGAGGGTATCTGCTGTACCC
GCGAAAAAGCTTCTCGATCGTTTGGGAAATCCACAAAACTCATTCCGTGC
AGTTCATGTGTCTGGTTCCAAAGGGAAAGGATCCGTTGCAACTTTAATTT
CAGCCGGTTTGCGTGATGCACCGTTCATTGATGCTCCGGTGGGGACATAC
ACCAGCCCTCACGTTGAAGATGTGAATGAACGAATGAGAGTGAACGGTGT
TCCAATTGCTGACGATTTGCTTAAAAGGTCACTAGAACAAGTTCTTCAAG
CGAGAGAACGTCCACCTTTGATGCAGGAAGCCACTTGGTTTGACGTCATC
TCTGCGACAGGCTTGCTCAGTTTGCACTACAGCAAAGTGAAATGGGCTGT
GGTGGAAGTGGGGATGGGTGGACGTCTAGACTCTACCAACGTTTTGTCTG
CGCCAGTAAGCGTCATCACCAACATTCATCACGAGCACGCGGACGTCATT
GGTCCCACTCTGCAAGACATTGCGTATGAAAAGGCAGGCATCATAGCCCC
TTCTTCGCATTGCATCTGTGGTCTCGATGGAAATGATCAACTAGCACACA
TATTTGCGGCAGAAGCCGCGGGTGTGTCGCCGAAGGCAACAGTGCATTTC
TGTCCACCTGCTCCAGGCTCGTCACTGTTTGATCGGAATCTACAGTTGGC
GCGAAAAGCTCTCGAACACGTTGCTCATCTTGAGGGCAGCCCTCATCTGA
GTGGAGAGGCGATGCTGCCGCGTCATCTTGCCATCTCAGCGCTTGCGCAA
CTTCCAGCGCGATCGGAACGCTTTCAAGTTGCGTGCGCAGGGTCCACGGT
TTCAGTTCTTCTCGACGGTGCCCATACCGAAGAAAGTGTAGCTCAAGTAC
TGTTAGAAGCTCGCAGTGAACGAAAGCCAGTTGTCGTGCTTGGCCTTGGT
GAGGACAAGAATCGTGACGCAATATGCAGGGTAGTAGCTTGTGCTGCAGC
AAAAGTGTTCGCAACGTCTGCTGGAGAAAGTGGCAAGTATGTGTCACCTA
CTGAGCTGGGGCGAACGTTGCAAGAGTTGAACGTGGCAAGTGCTACTATC
GACGTTGCCGAAGACGCCCTGCGCGCAGCCATTCAAGAAGCGTCTGCAAA
CGCCACAAACTTGGTGGTACTCGGTTCGTTCTATCTAGCGGGGCGATTGC
GGCCAAAGTTGAGAGAGATGCATGTACAAAAGTGA
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protein sequence of Ggra2747.t1

>Ggra2747.t1 ID=Ggra2747.t1|Name=Ggra2747.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=445bp
MSFIRPFQGAKKHSSELRQLLHRLENLVDWETRRRKSPHGHLLMRVSAVP
AKKLLDRLGNPQNSFRAVHVSGSKGKGSVATLISAGLRDAPFIDAPVGTY
TSPHVEDVNERMRVNGVPIADDLLKRSLEQVLQARERPPLMQEATWFDVI
SATGLLSLHYSKVKWAVVEVGMGGRLDSTNVLSAPVSVITNIHHEHADVI
GPTLQDIAYEKAGIIAPSSHCICGLDGNDQLAHIFAAEAAGVSPKATVHF
CPPAPGSSLFDRNLQLARKALEHVAHLEGSPHLSGEAMLPRHLAISALAQ
LPARSERFQVACAGSTVSVLLDGAHTEESVAQVLLEARSERKPVVVLGLG
EDKNRDAICRVVACAAAKVFATSAGESGKYVSPTELGRTLQELNVASATI
DVAEDALRAAIQEASANATNLVVLGSFYLAGRLRPKLREMHVQK*
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mRNA from alignment at tig00000005_pilon:1417804..1419138-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra2747.t1 ID=Ggra2747.t1|Name=Ggra2747.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1335bp|location=Sequence derived from alignment at tig00000005_pilon:1417804..1419138- (Gracilaria gracilis GNS1m male)
ATGAGTTTCATCCGCCCTTTCCAAGGCGCCAAGAAACACTCTTCTGAACT
CCGCCAGTTGCTACATCGACTTGAAAATCTAGTTGATTGGGAAACTCGGC
GGCGTAAAAGCCCTCATGGGCACCTTTTGATGAGGGTATCTGCTGTACCC
GCGAAAAAGCTTCTCGATCGTTTGGGAAATCCACAAAACTCATTCCGTGC
AGTTCATGTGTCTGGTTCCAAAGGGAAAGGATCCGTTGCAACTTTAATTT
CAGCCGGTTTGCGTGATGCACCGTTCATTGATGCTCCGGTGGGGACATAC
ACCAGCCCTCACGTTGAAGATGTGAATGAACGAATGAGAGTGAACGGTGT
TCCAATTGCTGACGATTTGCTTAAAAGGTCACTAGAACAAGTTCTTCAAG
CGAGAGAACGTCCACCTTTGATGCAGGAAGCCACTTGGTTTGACGTCATC
TCTGCGACAGGCTTGCTCAGTTTGCACTACAGCAAAGTGAAATGGGCTGT
GGTGGAAGTGGGGATGGGTGGACGTCTAGACTCTACCAACGTTTTGTCTG
CGCCAGTAAGCGTCATCACCAACATTCATCACGAGCACGCGGACGTCATT
GGTCCCACTCTGCAAGACATTGCGTATGAAAAGGCAGGCATCATAGCCCC
TTCTTCGCATTGCATCTGTGGTCTCGATGGAAATGATCAACTAGCACACA
TATTTGCGGCAGAAGCCGCGGGTGTGTCGCCGAAGGCAACAGTGCATTTC
TGTCCACCTGCTCCAGGCTCGTCACTGTTTGATCGGAATCTACAGTTGGC
GCGAAAAGCTCTCGAACACGTTGCTCATCTTGAGGGCAGCCCTCATCTGA
GTGGAGAGGCGATGCTGCCGCGTCATCTTGCCATCTCAGCGCTTGCGCAA
CTTCCAGCGCGATCGGAACGCTTTCAAGTTGCGTGCGCAGGGTCCACGGT
TTCAGTTCTTCTCGACGGTGCCCATACCGAAGAAAGTGTAGCTCAAGTAC
TGTTAGAAGCTCGCAGTGAACGAAAGCCAGTTGTCGTGCTTGGCCTTGGT
GAGGACAAGAATCGTGACGCAATATGCAGGGTAGTAGCTTGTGCTGCAGC
AAAAGTGTTCGCAACGTCTGCTGGAGAAAGTGGCAAGTATGTGTCACCTA
CTGAGCTGGGGCGAACGTTGCAAGAGTTGAACGTGGCAAGTGCTACTATC
GACGTTGCCGAAGACGCCCTGCGCGCAGCCATTCAAGAAGCGTCTGCAAA
CGCCACAAACTTGGTGGTACTCGGTTCGTTCTATCTAGCGGGGCGATTGC
GGCCAAAGTTGAGAGAGATGCATGTACAAAAGTGA
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Coding sequence (CDS) from alignment at tig00000005_pilon:1417804..1419138-

>Ggra2747.t1 ID=Ggra2747.t1|Name=Ggra2747.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1335bp|location=Sequence derived from alignment at tig00000005_pilon:1417804..1419138- (Gracilaria gracilis GNS1m male)
ATGAGTTTCATCCGCCCTTTCCAAGGCGCCAAGAAACACTCTTCTGAACT
CCGCCAGTTGCTACATCGACTTGAAAATCTAGTTGATTGGGAAACTCGGC
GGCGTAAAAGCCCTCATGGGCACCTTTTGATGAGGGTATCTGCTGTACCC
GCGAAAAAGCTTCTCGATCGTTTGGGAAATCCACAAAACTCATTCCGTGC
AGTTCATGTGTCTGGTTCCAAAGGGAAAGGATCCGTTGCAACTTTAATTT
CAGCCGGTTTGCGTGATGCACCGTTCATTGATGCTCCGGTGGGGACATAC
ACCAGCCCTCACGTTGAAGATGTGAATGAACGAATGAGAGTGAACGGTGT
TCCAATTGCTGACGATTTGCTTAAAAGGTCACTAGAACAAGTTCTTCAAG
CGAGAGAACGTCCACCTTTGATGCAGGAAGCCACTTGGTTTGACGTCATC
TCTGCGACAGGCTTGCTCAGTTTGCACTACAGCAAAGTGAAATGGGCTGT
GGTGGAAGTGGGGATGGGTGGACGTCTAGACTCTACCAACGTTTTGTCTG
CGCCAGTAAGCGTCATCACCAACATTCATCACGAGCACGCGGACGTCATT
GGTCCCACTCTGCAAGACATTGCGTATGAAAAGGCAGGCATCATAGCCCC
TTCTTCGCATTGCATCTGTGGTCTCGATGGAAATGATCAACTAGCACACA
TATTTGCGGCAGAAGCCGCGGGTGTGTCGCCGAAGGCAACAGTGCATTTC
TGTCCACCTGCTCCAGGCTCGTCACTGTTTGATCGGAATCTACAGTTGGC
GCGAAAAGCTCTCGAACACGTTGCTCATCTTGAGGGCAGCCCTCATCTGA
GTGGAGAGGCGATGCTGCCGCGTCATCTTGCCATCTCAGCGCTTGCGCAA
CTTCCAGCGCGATCGGAACGCTTTCAAGTTGCGTGCGCAGGGTCCACGGT
TTCAGTTCTTCTCGACGGTGCCCATACCGAAGAAAGTGTAGCTCAAGTAC
TGTTAGAAGCTCGCAGTGAACGAAAGCCAGTTGTCGTGCTTGGCCTTGGT
GAGGACAAGAATCGTGACGCAATATGCAGGGTAGTAGCTTGTGCTGCAGC
AAAAGTGTTCGCAACGTCTGCTGGAGAAAGTGGCAAGTATGTGTCACCTA
CTGAGCTGGGGCGAACGTTGCAAGAGTTGAACGTGGCAAGTGCTACTATC
GACGTTGCCGAAGACGCCCTGCGCGCAGCCATTCAAGAAGCGTCTGCAAA
CGCCACAAACTTGGTGGTACTCGGTTCGTTCTATCTAGCGGGGCGATTGC
GGCCAAAGTTGAGAGAGATGCATGTACAAAAGTGA
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