Ggra2743.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra2743.t1
Unique NameGgra2743.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length262
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000005_piloncontigtig00000005_pilon:1408791..1409576 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1108849.XP_002562656.1
PFAMsPkinase
Max annot lvl4751|Fungi
Evalue1.79e-47
EggNOG OGs2AGKR@1|root,2RZ04@2759|Eukaryota,3A17F@33154|Opisthokonta,3P2CN@4751|Fungi,3QUQD@4890|Ascomycota,20S3M@147545|Eurotiomycetes
DescriptionLipopolysaccharide kinase (Kdo/WaaP) family
COG categoryG
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra2743Ggra2743Gracilaria gracilis GNS1m malegenetig00000005_pilon 1408791..1409576 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2743.t1.stop1Ggra2743.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000005_pilon 1408791..1408793 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2743.t1.CDS1Ggra2743.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000005_pilon 1408791..1409576 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2743.t1.exon1Ggra2743.t1.exon1Gracilaria gracilis GNS1m maleexontig00000005_pilon 1408791..1409576 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2743.t1.start1Ggra2743.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000005_pilon 1409574..1409576 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2743.t1Ggra2743.t1Gracilaria gracilis GNS1m malepolypeptidetig00000005_pilon 1408791..1409576 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra2743.t1 ID=Ggra2743.t1|Name=Ggra2743.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=262bp
MKLLKTKFIYELGEEDVVKFSFTAVLYTAQDKIFVAKVPRRVYGHDSQTL
DLHALNGRQVDNKDIHPRFDKDSFTHVSVSRKEMAYIKRPDVIMYACEES
EEDTQMCELMYEEAKVCEILRKSPHPNIAKYLGCEVEDGYIVGLCFERCR
ETLRERVDACPRKVDKASCIESVKKGIQHLHALGFCHNDISPDNVMFDGS
STPVIIDFDSCRRKGESLGCKTGTLGFSRTDVVTSKVENDIFALQKLEEY
LSVINDSCGKR*
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spliced messenger RNA

>Ggra2743.t1 ID=Ggra2743.t1|Name=Ggra2743.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=786bp|location=Sequence derived from alignment at tig00000005_pilon:1408791..1409576- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGCTGCTCAAGACCAAATTTATATATGAGCTGGGAGAAGAAGATGT
CGTAAAGTTTTCATTCACAGCCGTTCTCTACACAGCCCAAGACAAAATTT
TCGTTGCCAAAGTTCCACGTCGAGTATATGGCCATGATTCACAAACCCTC
GATCTTCACGCATTAAATGGTCGGCAAGTTGATAACAAGGATATTCATCC
TCGTTTCGATAAAGATAGCTTCACCCACGTCTCAGTTTCACGAAAGGAAA
TGGCTTACATTAAGCGGCCGGATGTGATAATGTATGCATGTGAGGAAAGC
GAAGAAGACACTCAAATGTGCGAATTGATGTATGAAGAGGCCAAAGTATG
TGAGATCTTGAGGAAATCCCCTCACCCCAACATAGCAAAGTACTTAGGGT
GTGAAGTCGAAGACGGATACATAGTTGGGCTCTGTTTTGAACGATGCCGC
GAGACACTGCGCGAACGCGTAGATGCTTGTCCGCGTAAAGTTGACAAAGC
ATCTTGTATCGAGTCAGTTAAGAAGGGCATTCAGCACTTGCACGCTTTAG
GTTTCTGTCACAATGATATTAGCCCCGACAACGTGATGTTCGACGGCAGT
AGTACGCCAGTGATCATAGATTTTGATTCATGTCGGCGCAAGGGAGAGTC
GCTGGGATGCAAGACTGGGACATTGGGCTTTTCCAGGACGGATGTTGTGA
CTTCAAAAGTTGAAAACGATATCTTTGCGCTACAGAAACTAGAAGAGTAT
TTGAGCGTTATCAACGATTCATGTGGTAAACGGTAG
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protein sequence of Ggra2743.t1

>Ggra2743.t1 ID=Ggra2743.t1|Name=Ggra2743.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=262bp
MKLLKTKFIYELGEEDVVKFSFTAVLYTAQDKIFVAKVPRRVYGHDSQTL
DLHALNGRQVDNKDIHPRFDKDSFTHVSVSRKEMAYIKRPDVIMYACEES
EEDTQMCELMYEEAKVCEILRKSPHPNIAKYLGCEVEDGYIVGLCFERCR
ETLRERVDACPRKVDKASCIESVKKGIQHLHALGFCHNDISPDNVMFDGS
STPVIIDFDSCRRKGESLGCKTGTLGFSRTDVVTSKVENDIFALQKLEEY
LSVINDSCGKR*
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mRNA from alignment at tig00000005_pilon:1408791..1409576-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra2743.t1 ID=Ggra2743.t1|Name=Ggra2743.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=786bp|location=Sequence derived from alignment at tig00000005_pilon:1408791..1409576- (Gracilaria gracilis GNS1m male)
ATGAAGCTGCTCAAGACCAAATTTATATATGAGCTGGGAGAAGAAGATGT
CGTAAAGTTTTCATTCACAGCCGTTCTCTACACAGCCCAAGACAAAATTT
TCGTTGCCAAAGTTCCACGTCGAGTATATGGCCATGATTCACAAACCCTC
GATCTTCACGCATTAAATGGTCGGCAAGTTGATAACAAGGATATTCATCC
TCGTTTCGATAAAGATAGCTTCACCCACGTCTCAGTTTCACGAAAGGAAA
TGGCTTACATTAAGCGGCCGGATGTGATAATGTATGCATGTGAGGAAAGC
GAAGAAGACACTCAAATGTGCGAATTGATGTATGAAGAGGCCAAAGTATG
TGAGATCTTGAGGAAATCCCCTCACCCCAACATAGCAAAGTACTTAGGGT
GTGAAGTCGAAGACGGATACATAGTTGGGCTCTGTTTTGAACGATGCCGC
GAGACACTGCGCGAACGCGTAGATGCTTGTCCGCGTAAAGTTGACAAAGC
ATCTTGTATCGAGTCAGTTAAGAAGGGCATTCAGCACTTGCACGCTTTAG
GTTTCTGTCACAATGATATTAGCCCCGACAACGTGATGTTCGACGGCAGT
AGTACGCCAGTGATCATAGATTTTGATTCATGTCGGCGCAAGGGAGAGTC
GCTGGGATGCAAGACTGGGACATTGGGCTTTTCCAGGACGGATGTTGTGA
CTTCAAAAGTTGAAAACGATATCTTTGCGCTACAGAAACTAGAAGAGTAT
TTGAGCGTTATCAACGATTCATGTGGTAAACGGTAG
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Coding sequence (CDS) from alignment at tig00000005_pilon:1408791..1409576-

>Ggra2743.t1 ID=Ggra2743.t1|Name=Ggra2743.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=786bp|location=Sequence derived from alignment at tig00000005_pilon:1408791..1409576- (Gracilaria gracilis GNS1m male)
ATGAAGCTGCTCAAGACCAAATTTATATATGAGCTGGGAGAAGAAGATGT
CGTAAAGTTTTCATTCACAGCCGTTCTCTACACAGCCCAAGACAAAATTT
TCGTTGCCAAAGTTCCACGTCGAGTATATGGCCATGATTCACAAACCCTC
GATCTTCACGCATTAAATGGTCGGCAAGTTGATAACAAGGATATTCATCC
TCGTTTCGATAAAGATAGCTTCACCCACGTCTCAGTTTCACGAAAGGAAA
TGGCTTACATTAAGCGGCCGGATGTGATAATGTATGCATGTGAGGAAAGC
GAAGAAGACACTCAAATGTGCGAATTGATGTATGAAGAGGCCAAAGTATG
TGAGATCTTGAGGAAATCCCCTCACCCCAACATAGCAAAGTACTTAGGGT
GTGAAGTCGAAGACGGATACATAGTTGGGCTCTGTTTTGAACGATGCCGC
GAGACACTGCGCGAACGCGTAGATGCTTGTCCGCGTAAAGTTGACAAAGC
ATCTTGTATCGAGTCAGTTAAGAAGGGCATTCAGCACTTGCACGCTTTAG
GTTTCTGTCACAATGATATTAGCCCCGACAACGTGATGTTCGACGGCAGT
AGTACGCCAGTGATCATAGATTTTGATTCATGTCGGCGCAAGGGAGAGTC
GCTGGGATGCAAGACTGGGACATTGGGCTTTTCCAGGACGGATGTTGTGA
CTTCAAAAGTTGAAAACGATATCTTTGCGCTACAGAAACTAGAAGAGTAT
TTGAGCGTTATCAACGATTCATGTGGTAAACGGTAG
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