Ggra2742.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra2742.t1
Unique NameGgra2742.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length359
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000005_piloncontigtig00000005_pilon:1406251..1407327 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog45157.CMK245CT
PFAMsHisG,HisG_C
Max annot lvl2759|Eukaryota
KEGG rclassRC02819,RC03200
KEGG koko:K00765
KEGG ReactionR01071
KEGG Pathwayko00340,ko01100,ko01110,ko01230,map00340,map01100,map01110,map01230
KEGG ModuleM00026
GOsGO:0000105,GO:0003674,GO:0003824,GO:0003879,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006520,GO:0006547,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009507,GO:0009532,GO:0009536,GO:0009570,GO:0009987,GO:0016053,GO:0016740,GO:0016757,GO:0016763,GO:0018130,GO:0019438,GO:0019752,GO:0034641,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0046394,GO:0046483,GO:0052803,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607
Evalue4.9e-124
EggNOG OGsCOG0040@1|root,KOG2831@2759|Eukaryota
EC2.4.2.17
DescriptionATP phosphoribosyltransferase activity
COG categoryE
BRITEko00000,ko00001,ko00002,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra2742Ggra2742Gracilaria gracilis GNS1m malegenetig00000005_pilon 1406251..1407327 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2742.t1.start1Ggra2742.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000005_pilon 1406251..1406253 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2742.t1.CDS1Ggra2742.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000005_pilon 1406251..1407327 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2742.t1.exon1Ggra2742.t1.exon1Gracilaria gracilis GNS1m maleexontig00000005_pilon 1406251..1407327 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2742.t1.stop1Ggra2742.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000005_pilon 1407325..1407327 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2742.t1Ggra2742.t1Gracilaria gracilis GNS1m malepolypeptidetig00000005_pilon 1406251..1407327 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra2742.t1 ID=Ggra2742.t1|Name=Ggra2742.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=359bp
MIAPEDRKTIRLAIPSKGDILQSTKELLSEIGMDVELHNPRQYVAALRGS
DVEVWLQRPADIVRKVRDGHCDLGIVGYDLVAEHGGTKRTVLPVHDKLGY
GECRLSVGVPMAWTDCGDMNGLRKRASVSELRIATKYTNETRRFLLSHGI
DNYRVITMDGALEASTQMGTADCIIDLVSSGTTLRENLLKEITGGTLLSS
SMQLVTNRSHISDEGNFGQRLRGITQELLERIEAHLLGKKNYNIIANIRG
SSMVAVSRRLASKSNLRGMDGPTVSQVVPPADESEGMYAISIVLPKEQLY
SAIQQLRSVGGSGVTVLPVSFVFPQHCKRWSTLLEDIGMNSTALPDPDPF
EVQSVASP*
back to top

spliced messenger RNA

>Ggra2742.t1 ID=Ggra2742.t1|Name=Ggra2742.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1077bp|location=Sequence derived from alignment at tig00000005_pilon:1406251..1407327+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATTGCCCCAGAAGACCGCAAAACGATTCGCCTCGCAATCCCATCAAA
GGGCGATATCCTGCAATCAACCAAAGAACTGCTGTCTGAAATTGGAATGG
ATGTCGAGCTTCACAACCCGCGTCAATACGTAGCAGCGCTTCGTGGTTCG
GACGTTGAAGTCTGGTTGCAGCGACCGGCTGATATTGTGCGTAAGGTTCG
AGACGGTCATTGTGATTTGGGTATTGTGGGCTATGATCTCGTTGCTGAAC
ACGGTGGTACGAAAAGGACAGTTTTACCTGTGCATGACAAGCTTGGCTAT
GGTGAATGTCGTTTGTCCGTCGGCGTGCCTATGGCCTGGACCGATTGCGG
TGATATGAACGGCCTGAGAAAACGTGCGTCTGTCAGTGAGCTTCGAATAG
CCACCAAATATACAAACGAGACGCGTCGCTTTTTGCTGTCCCACGGTATT
GACAACTATCGGGTGATTACGATGGATGGTGCCTTGGAAGCATCGACCCA
GATGGGTACTGCAGATTGCATCATCGACCTTGTTTCTTCAGGCACAACTC
TTCGTGAGAATCTGCTCAAGGAGATAACCGGTGGGACTTTGCTTTCTTCC
TCCATGCAACTCGTTACAAATCGCAGCCACATATCGGACGAAGGCAACTT
TGGACAACGTCTCCGAGGTATAACACAGGAGCTTCTTGAGCGCATCGAAG
CTCATCTTTTGGGGAAGAAAAACTACAACATCATTGCCAATATTAGAGGA
TCAAGTATGGTGGCAGTCAGTCGGCGCCTAGCGTCTAAAAGCAACCTGCG
AGGAATGGATGGTCCTACAGTCAGTCAAGTGGTACCCCCGGCAGATGAAT
CTGAAGGCATGTATGCCATCAGTATCGTCCTTCCGAAAGAACAGCTCTAC
TCAGCTATTCAACAACTGCGCAGCGTGGGTGGTTCTGGGGTCACCGTGCT
GCCAGTGTCGTTCGTGTTTCCGCAGCATTGCAAGAGATGGTCTACACTAC
TGGAAGACATTGGCATGAATTCAACCGCCTTACCTGACCCTGACCCGTTC
GAAGTACAAAGCGTGGCCTCCCCATAA
back to top

protein sequence of Ggra2742.t1

>Ggra2742.t1 ID=Ggra2742.t1|Name=Ggra2742.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=359bp
MIAPEDRKTIRLAIPSKGDILQSTKELLSEIGMDVELHNPRQYVAALRGS
DVEVWLQRPADIVRKVRDGHCDLGIVGYDLVAEHGGTKRTVLPVHDKLGY
GECRLSVGVPMAWTDCGDMNGLRKRASVSELRIATKYTNETRRFLLSHGI
DNYRVITMDGALEASTQMGTADCIIDLVSSGTTLRENLLKEITGGTLLSS
SMQLVTNRSHISDEGNFGQRLRGITQELLERIEAHLLGKKNYNIIANIRG
SSMVAVSRRLASKSNLRGMDGPTVSQVVPPADESEGMYAISIVLPKEQLY
SAIQQLRSVGGSGVTVLPVSFVFPQHCKRWSTLLEDIGMNSTALPDPDPF
EVQSVASP*
back to top

mRNA from alignment at tig00000005_pilon:1406251..1407327+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra2742.t1 ID=Ggra2742.t1|Name=Ggra2742.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1077bp|location=Sequence derived from alignment at tig00000005_pilon:1406251..1407327+ (Gracilaria gracilis GNS1m male)
ATGATTGCCCCAGAAGACCGCAAAACGATTCGCCTCGCAATCCCATCAAA
GGGCGATATCCTGCAATCAACCAAAGAACTGCTGTCTGAAATTGGAATGG
ATGTCGAGCTTCACAACCCGCGTCAATACGTAGCAGCGCTTCGTGGTTCG
GACGTTGAAGTCTGGTTGCAGCGACCGGCTGATATTGTGCGTAAGGTTCG
AGACGGTCATTGTGATTTGGGTATTGTGGGCTATGATCTCGTTGCTGAAC
ACGGTGGTACGAAAAGGACAGTTTTACCTGTGCATGACAAGCTTGGCTAT
GGTGAATGTCGTTTGTCCGTCGGCGTGCCTATGGCCTGGACCGATTGCGG
TGATATGAACGGCCTGAGAAAACGTGCGTCTGTCAGTGAGCTTCGAATAG
CCACCAAATATACAAACGAGACGCGTCGCTTTTTGCTGTCCCACGGTATT
GACAACTATCGGGTGATTACGATGGATGGTGCCTTGGAAGCATCGACCCA
GATGGGTACTGCAGATTGCATCATCGACCTTGTTTCTTCAGGCACAACTC
TTCGTGAGAATCTGCTCAAGGAGATAACCGGTGGGACTTTGCTTTCTTCC
TCCATGCAACTCGTTACAAATCGCAGCCACATATCGGACGAAGGCAACTT
TGGACAACGTCTCCGAGGTATAACACAGGAGCTTCTTGAGCGCATCGAAG
CTCATCTTTTGGGGAAGAAAAACTACAACATCATTGCCAATATTAGAGGA
TCAAGTATGGTGGCAGTCAGTCGGCGCCTAGCGTCTAAAAGCAACCTGCG
AGGAATGGATGGTCCTACAGTCAGTCAAGTGGTACCCCCGGCAGATGAAT
CTGAAGGCATGTATGCCATCAGTATCGTCCTTCCGAAAGAACAGCTCTAC
TCAGCTATTCAACAACTGCGCAGCGTGGGTGGTTCTGGGGTCACCGTGCT
GCCAGTGTCGTTCGTGTTTCCGCAGCATTGCAAGAGATGGTCTACACTAC
TGGAAGACATTGGCATGAATTCAACCGCCTTACCTGACCCTGACCCGTTC
GAAGTACAAAGCGTGGCCTCCCCATAA
back to top

Coding sequence (CDS) from alignment at tig00000005_pilon:1406251..1407327+

>Ggra2742.t1 ID=Ggra2742.t1|Name=Ggra2742.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1077bp|location=Sequence derived from alignment at tig00000005_pilon:1406251..1407327+ (Gracilaria gracilis GNS1m male)
ATGATTGCCCCAGAAGACCGCAAAACGATTCGCCTCGCAATCCCATCAAA
GGGCGATATCCTGCAATCAACCAAAGAACTGCTGTCTGAAATTGGAATGG
ATGTCGAGCTTCACAACCCGCGTCAATACGTAGCAGCGCTTCGTGGTTCG
GACGTTGAAGTCTGGTTGCAGCGACCGGCTGATATTGTGCGTAAGGTTCG
AGACGGTCATTGTGATTTGGGTATTGTGGGCTATGATCTCGTTGCTGAAC
ACGGTGGTACGAAAAGGACAGTTTTACCTGTGCATGACAAGCTTGGCTAT
GGTGAATGTCGTTTGTCCGTCGGCGTGCCTATGGCCTGGACCGATTGCGG
TGATATGAACGGCCTGAGAAAACGTGCGTCTGTCAGTGAGCTTCGAATAG
CCACCAAATATACAAACGAGACGCGTCGCTTTTTGCTGTCCCACGGTATT
GACAACTATCGGGTGATTACGATGGATGGTGCCTTGGAAGCATCGACCCA
GATGGGTACTGCAGATTGCATCATCGACCTTGTTTCTTCAGGCACAACTC
TTCGTGAGAATCTGCTCAAGGAGATAACCGGTGGGACTTTGCTTTCTTCC
TCCATGCAACTCGTTACAAATCGCAGCCACATATCGGACGAAGGCAACTT
TGGACAACGTCTCCGAGGTATAACACAGGAGCTTCTTGAGCGCATCGAAG
CTCATCTTTTGGGGAAGAAAAACTACAACATCATTGCCAATATTAGAGGA
TCAAGTATGGTGGCAGTCAGTCGGCGCCTAGCGTCTAAAAGCAACCTGCG
AGGAATGGATGGTCCTACAGTCAGTCAAGTGGTACCCCCGGCAGATGAAT
CTGAAGGCATGTATGCCATCAGTATCGTCCTTCCGAAAGAACAGCTCTAC
TCAGCTATTCAACAACTGCGCAGCGTGGGTGGTTCTGGGGTCACCGTGCT
GCCAGTGTCGTTCGTGTTTCCGCAGCATTGCAAGAGATGGTCTACACTAC
TGGAAGACATTGGCATGAATTCAACCGCCTTACCTGACCCTGACCCGTTC
GAAGTACAAAGCGTGGCCTCCCCATAA
back to top