Ggra2733.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra2733.t1
Unique Name	Ggra2733.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	727

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000005_pilon	contig	tig00000005_pilon:1378582..1380762 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	45157.CMK288CT
PFAMs	Na_H_Exchanger,TrkA_N
Max annot lvl	2759\|Eukaryota
GOs	GO:0003674,GO:0005215,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006810,GO:0006811,GO:0006812,GO:0006996,GO:0008150,GO:0008324,GO:0009314,GO:0009416,GO:0009507,GO:0009534,GO:0009535,GO:0009536,GO:0009579,GO:0009628,GO:0009642,GO:0009643,GO:0009657,GO:0009658,GO:0009893,GO:0009987,GO:0010109,GO:0015075,GO:0015318,GO:0016020,GO:0016043,GO:0019222,GO:0022857,GO:0022890,GO:0031323,GO:0031325,GO:0031976,GO:0031984,GO:0034220,GO:0034357,GO:0042651,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044436,GO:0044444,GO:0044446,GO:0044464,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0050896,GO:0051179,GO:0051234,GO:0055035,GO:0055085,GO:0065007,GO:0071840,GO:0098655,GO:1905157
Evalue	3.27e-166
EggNOG OGs	COG0475@1\|root,KOG1650@2759\|Eukaryota
Description	solute:proton antiporter activity
COG category	P

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra2733	Ggra2733	Gracilaria gracilis GNS1m male	gene	tig00000005_pilon 1378582..1380762 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2733.t1.start1	Ggra2733.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000005_pilon 1378582..1378584 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2733.t1.CDS1	Ggra2733.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000005_pilon 1378582..1380762 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2733.t1.exon1	Ggra2733.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000005_pilon 1378582..1380762 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2733.t1.stop1	Ggra2733.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000005_pilon 1380760..1380762 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2733.t1	Ggra2733.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000005_pilon 1378582..1380762 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000005_pilon:1378582..1380762+
coding sequence from alignment at tig00000005_pilon:1378582..1380762+

mRNA sequence

>Ggra2733.t1 ID=Ggra2733.t1|Name=Ggra2733.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=727bp
MQTPSAFSSSTTPAYVLAPHTVYTTRCTSSSTLKRPRSLRHLHSNRTCFI
RRFHRPNSSEPIPRTTPAKRTVPTALGLDSAVQGGLNEALELLAATAITI
PIFKRLKLSPILGFLLAGIVLGPCATRLIKDVEDIRTLADFGVLFLLFEM
GLELSLDRLRKLRKYTFGMGSVQVIVTSLVLGLGAYAMGGTVAESAAVGS
ALSLSSSAFILQILAEKGERQSRAGVATFGILLFQDIAVVPLLVLVPLLS
NTTRLDLSHLGDGAIHAIREGAKHVISVLGTLNFIVLAGGAFLKRVFRIV
ADSRSSEAFTATVLLTVLGTAMFTEELGLSMTMGSFLAGVLLAETSFRSR
IKIDLEPFRGLFLGLFFITTGMSLDVSLFFTEPMQISFLIASLIFWKTAI
CTLIGLPFGLSLAESLRVGLLLGQGSEFAFVLFALANKLGFLPDDVNSFL
VTTVVASMSLTPLLYEGGIWVGRQVDKLVESSGGTVTTEATMQEVAEPDS
NFVLICGFGPVGRVVGRMLSRKFIRWVAIDIDVNRVRKAVDSNLPVVYGD
SNRPSEFLEANGLSTPSAFVITISDDELVDDTLSAIRSFFPDRPVYLRAK
NVQQQKEYLRRGARAMYPESFETSLQLGQSVLEGFNTSKVDIKSIKAEVR
GDSGLEGAFEEYEEWFKKNIRNPGDVRGHDEATGTKKAARESGSTHVVLA
KQNSSRRKEDSEPKIGNGIASPTDKT*

spliced messenger RNA

>Ggra2733.t1 ID=Ggra2733.t1|Name=Ggra2733.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2181bp|location=Sequence derived from alignment at tig00000005_pilon:1378582..1380762+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAAACTCCGTCTGCCTTTTCGTCCAGCACCACCCCCGCATATGTTCT
TGCACCACACACTGTTTACACCACCAGATGCACCTCTTCGTCCACTCTCA
AGAGACCGCGATCACTGCGCCATTTACATTCGAACCGCACTTGTTTCATT
CGCCGTTTCCATCGCCCCAACAGCAGCGAGCCTATCCCCAGAACAACGCC
TGCCAAACGCACAGTTCCGACTGCCCTGGGACTGGATTCTGCCGTGCAAG
GTGGTTTAAATGAAGCCCTGGAGCTTTTGGCAGCCACAGCAATAACAATT
CCTATATTCAAACGTCTAAAGCTGTCCCCAATTTTGGGCTTCTTGCTAGC
GGGAATTGTGCTGGGACCTTGTGCTACCCGCCTCATAAAAGATGTGGAGG
ACATACGAACGCTCGCAGACTTTGGCGTACTTTTCCTTCTTTTCGAGATG
GGTCTGGAATTGTCCCTGGACCGACTCAGGAAGCTTCGCAAGTATACATT
TGGCATGGGCTCGGTTCAAGTCATCGTCACATCTCTAGTATTGGGCTTAG
GTGCGTATGCTATGGGCGGCACCGTAGCTGAGAGCGCAGCCGTGGGCTCA
GCATTATCTCTTTCATCCAGCGCTTTTATTCTACAGATTCTTGCTGAGAA
GGGGGAGCGACAATCTCGCGCCGGAGTTGCCACCTTTGGAATTCTTCTCT
TTCAAGACATTGCTGTTGTTCCACTCTTAGTTCTAGTCCCGCTTCTGAGC
AACACCACGCGCCTTGACCTATCACACCTTGGTGATGGCGCAATTCACGC
CATTCGAGAAGGCGCAAAACACGTCATATCGGTACTTGGAACGCTGAACT
TTATTGTACTCGCTGGAGGTGCTTTCTTAAAACGAGTATTCCGCATCGTA
GCAGACAGCCGCAGCTCTGAGGCATTCACTGCAACAGTGCTGCTCACCGT
CTTGGGAACGGCTATGTTCACCGAAGAACTCGGTCTCTCTATGACTATGG
GTTCATTCTTGGCGGGAGTGCTCCTTGCGGAGACCTCTTTTCGCTCGAGA
ATCAAAATAGATCTAGAGCCATTCAGAGGTCTCTTTCTGGGACTGTTCTT
CATTACGACTGGTATGTCGCTTGATGTTTCGCTGTTCTTCACAGAACCTA
TGCAAATCAGCTTTCTCATTGCTTCGTTGATTTTCTGGAAGACGGCAATT
TGTACGCTTATCGGCCTCCCGTTCGGCTTGTCCTTGGCAGAGTCGCTGCG
TGTGGGTCTTTTGCTCGGGCAAGGTAGTGAGTTTGCTTTTGTTTTGTTTG
CGCTGGCAAACAAGCTCGGATTTCTGCCCGATGACGTGAACTCCTTCTTG
GTGACAACAGTTGTTGCCTCAATGTCGTTGACTCCTCTCCTGTATGAAGG
TGGGATATGGGTCGGGCGTCAAGTAGATAAGCTTGTTGAATCTTCGGGGG
GAACCGTGACTACGGAAGCTACAATGCAGGAGGTCGCTGAACCAGATAGC
AATTTCGTGCTCATCTGTGGTTTCGGACCTGTCGGAAGAGTGGTGGGAAG
GATGCTTTCCAGGAAATTTATTCGTTGGGTTGCCATCGATATCGACGTGA
ATCGTGTAAGAAAGGCCGTTGATTCAAATCTTCCTGTCGTTTACGGCGAT
AGTAACCGGCCATCCGAATTCTTGGAAGCAAATGGTCTTTCTACCCCAAG
TGCTTTTGTGATAACAATTTCGGATGACGAACTGGTTGACGACACGCTTA
GTGCAATCAGATCATTTTTCCCGGACAGACCCGTATATTTGCGTGCGAAG
AATGTGCAGCAGCAAAAGGAATACCTGCGTCGTGGGGCACGCGCCATGTA
CCCGGAGTCCTTCGAGACTAGTTTGCAGCTCGGTCAAAGTGTTCTAGAGG
GTTTCAACACGTCAAAAGTGGATATCAAGTCAATTAAGGCGGAGGTTAGA
GGAGACAGTGGTCTGGAAGGAGCGTTTGAAGAATATGAAGAATGGTTCAA
GAAAAACATTCGCAATCCTGGTGATGTGCGAGGCCATGACGAGGCTACAG
GAACCAAGAAAGCAGCCAGAGAGAGTGGTTCTACTCACGTTGTTTTGGCA
AAGCAAAACTCGTCGCGAAGAAAAGAAGACAGTGAACCAAAAATAGGTAA
CGGAATAGCATCCCCAACAGACAAAACGTGA

protein sequence of Ggra2733.t1

>Ggra2733.t1 ID=Ggra2733.t1|Name=Ggra2733.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=727bp
MQTPSAFSSSTTPAYVLAPHTVYTTRCTSSSTLKRPRSLRHLHSNRTCFI
RRFHRPNSSEPIPRTTPAKRTVPTALGLDSAVQGGLNEALELLAATAITI
PIFKRLKLSPILGFLLAGIVLGPCATRLIKDVEDIRTLADFGVLFLLFEM
GLELSLDRLRKLRKYTFGMGSVQVIVTSLVLGLGAYAMGGTVAESAAVGS
ALSLSSSAFILQILAEKGERQSRAGVATFGILLFQDIAVVPLLVLVPLLS
NTTRLDLSHLGDGAIHAIREGAKHVISVLGTLNFIVLAGGAFLKRVFRIV
ADSRSSEAFTATVLLTVLGTAMFTEELGLSMTMGSFLAGVLLAETSFRSR
IKIDLEPFRGLFLGLFFITTGMSLDVSLFFTEPMQISFLIASLIFWKTAI
CTLIGLPFGLSLAESLRVGLLLGQGSEFAFVLFALANKLGFLPDDVNSFL
VTTVVASMSLTPLLYEGGIWVGRQVDKLVESSGGTVTTEATMQEVAEPDS
NFVLICGFGPVGRVVGRMLSRKFIRWVAIDIDVNRVRKAVDSNLPVVYGD
SNRPSEFLEANGLSTPSAFVITISDDELVDDTLSAIRSFFPDRPVYLRAK
NVQQQKEYLRRGARAMYPESFETSLQLGQSVLEGFNTSKVDIKSIKAEVR
GDSGLEGAFEEYEEWFKKNIRNPGDVRGHDEATGTKKAARESGSTHVVLA
KQNSSRRKEDSEPKIGNGIASPTDKT*

mRNA from alignment at tig00000005_pilon:1378582..1380762+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra2733.t1 ID=Ggra2733.t1|Name=Ggra2733.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2181bp|location=Sequence derived from alignment at tig00000005_pilon:1378582..1380762+ (Gracilaria gracilis GNS1m male)
ATGCAAACTCCGTCTGCCTTTTCGTCCAGCACCACCCCCGCATATGTTCT
TGCACCACACACTGTTTACACCACCAGATGCACCTCTTCGTCCACTCTCA
AGAGACCGCGATCACTGCGCCATTTACATTCGAACCGCACTTGTTTCATT
CGCCGTTTCCATCGCCCCAACAGCAGCGAGCCTATCCCCAGAACAACGCC
TGCCAAACGCACAGTTCCGACTGCCCTGGGACTGGATTCTGCCGTGCAAG
GTGGTTTAAATGAAGCCCTGGAGCTTTTGGCAGCCACAGCAATAACAATT
CCTATATTCAAACGTCTAAAGCTGTCCCCAATTTTGGGCTTCTTGCTAGC
GGGAATTGTGCTGGGACCTTGTGCTACCCGCCTCATAAAAGATGTGGAGG
ACATACGAACGCTCGCAGACTTTGGCGTACTTTTCCTTCTTTTCGAGATG
GGTCTGGAATTGTCCCTGGACCGACTCAGGAAGCTTCGCAAGTATACATT
TGGCATGGGCTCGGTTCAAGTCATCGTCACATCTCTAGTATTGGGCTTAG
GTGCGTATGCTATGGGCGGCACCGTAGCTGAGAGCGCAGCCGTGGGCTCA
GCATTATCTCTTTCATCCAGCGCTTTTATTCTACAGATTCTTGCTGAGAA
GGGGGAGCGACAATCTCGCGCCGGAGTTGCCACCTTTGGAATTCTTCTCT
TTCAAGACATTGCTGTTGTTCCACTCTTAGTTCTAGTCCCGCTTCTGAGC
AACACCACGCGCCTTGACCTATCACACCTTGGTGATGGCGCAATTCACGC
CATTCGAGAAGGCGCAAAACACGTCATATCGGTACTTGGAACGCTGAACT
TTATTGTACTCGCTGGAGGTGCTTTCTTAAAACGAGTATTCCGCATCGTA
GCAGACAGCCGCAGCTCTGAGGCATTCACTGCAACAGTGCTGCTCACCGT
CTTGGGAACGGCTATGTTCACCGAAGAACTCGGTCTCTCTATGACTATGG
GTTCATTCTTGGCGGGAGTGCTCCTTGCGGAGACCTCTTTTCGCTCGAGA
ATCAAAATAGATCTAGAGCCATTCAGAGGTCTCTTTCTGGGACTGTTCTT
CATTACGACTGGTATGTCGCTTGATGTTTCGCTGTTCTTCACAGAACCTA
TGCAAATCAGCTTTCTCATTGCTTCGTTGATTTTCTGGAAGACGGCAATT
TGTACGCTTATCGGCCTCCCGTTCGGCTTGTCCTTGGCAGAGTCGCTGCG
TGTGGGTCTTTTGCTCGGGCAAGGTAGTGAGTTTGCTTTTGTTTTGTTTG
CGCTGGCAAACAAGCTCGGATTTCTGCCCGATGACGTGAACTCCTTCTTG
GTGACAACAGTTGTTGCCTCAATGTCGTTGACTCCTCTCCTGTATGAAGG
TGGGATATGGGTCGGGCGTCAAGTAGATAAGCTTGTTGAATCTTCGGGGG
GAACCGTGACTACGGAAGCTACAATGCAGGAGGTCGCTGAACCAGATAGC
AATTTCGTGCTCATCTGTGGTTTCGGACCTGTCGGAAGAGTGGTGGGAAG
GATGCTTTCCAGGAAATTTATTCGTTGGGTTGCCATCGATATCGACGTGA
ATCGTGTAAGAAAGGCCGTTGATTCAAATCTTCCTGTCGTTTACGGCGAT
AGTAACCGGCCATCCGAATTCTTGGAAGCAAATGGTCTTTCTACCCCAAG
TGCTTTTGTGATAACAATTTCGGATGACGAACTGGTTGACGACACGCTTA
GTGCAATCAGATCATTTTTCCCGGACAGACCCGTATATTTGCGTGCGAAG
AATGTGCAGCAGCAAAAGGAATACCTGCGTCGTGGGGCACGCGCCATGTA
CCCGGAGTCCTTCGAGACTAGTTTGCAGCTCGGTCAAAGTGTTCTAGAGG
GTTTCAACACGTCAAAAGTGGATATCAAGTCAATTAAGGCGGAGGTTAGA
GGAGACAGTGGTCTGGAAGGAGCGTTTGAAGAATATGAAGAATGGTTCAA
GAAAAACATTCGCAATCCTGGTGATGTGCGAGGCCATGACGAGGCTACAG
GAACCAAGAAAGCAGCCAGAGAGAGTGGTTCTACTCACGTTGTTTTGGCA
AAGCAAAACTCGTCGCGAAGAAAAGAAGACAGTGAACCAAAAATAGGTAA
CGGAATAGCATCCCCAACAGACAAAACGTGA

Coding sequence (CDS) from alignment at tig00000005_pilon:1378582..1380762+

>Ggra2733.t1 ID=Ggra2733.t1|Name=Ggra2733.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=2181bp|location=Sequence derived from alignment at tig00000005_pilon:1378582..1380762+ (Gracilaria gracilis GNS1m male)
ATGCAAACTCCGTCTGCCTTTTCGTCCAGCACCACCCCCGCATATGTTCT
TGCACCACACACTGTTTACACCACCAGATGCACCTCTTCGTCCACTCTCA
AGAGACCGCGATCACTGCGCCATTTACATTCGAACCGCACTTGTTTCATT
CGCCGTTTCCATCGCCCCAACAGCAGCGAGCCTATCCCCAGAACAACGCC
TGCCAAACGCACAGTTCCGACTGCCCTGGGACTGGATTCTGCCGTGCAAG
GTGGTTTAAATGAAGCCCTGGAGCTTTTGGCAGCCACAGCAATAACAATT
CCTATATTCAAACGTCTAAAGCTGTCCCCAATTTTGGGCTTCTTGCTAGC
GGGAATTGTGCTGGGACCTTGTGCTACCCGCCTCATAAAAGATGTGGAGG
ACATACGAACGCTCGCAGACTTTGGCGTACTTTTCCTTCTTTTCGAGATG
GGTCTGGAATTGTCCCTGGACCGACTCAGGAAGCTTCGCAAGTATACATT
TGGCATGGGCTCGGTTCAAGTCATCGTCACATCTCTAGTATTGGGCTTAG
GTGCGTATGCTATGGGCGGCACCGTAGCTGAGAGCGCAGCCGTGGGCTCA
GCATTATCTCTTTCATCCAGCGCTTTTATTCTACAGATTCTTGCTGAGAA
GGGGGAGCGACAATCTCGCGCCGGAGTTGCCACCTTTGGAATTCTTCTCT
TTCAAGACATTGCTGTTGTTCCACTCTTAGTTCTAGTCCCGCTTCTGAGC
AACACCACGCGCCTTGACCTATCACACCTTGGTGATGGCGCAATTCACGC
CATTCGAGAAGGCGCAAAACACGTCATATCGGTACTTGGAACGCTGAACT
TTATTGTACTCGCTGGAGGTGCTTTCTTAAAACGAGTATTCCGCATCGTA
GCAGACAGCCGCAGCTCTGAGGCATTCACTGCAACAGTGCTGCTCACCGT
CTTGGGAACGGCTATGTTCACCGAAGAACTCGGTCTCTCTATGACTATGG
GTTCATTCTTGGCGGGAGTGCTCCTTGCGGAGACCTCTTTTCGCTCGAGA
ATCAAAATAGATCTAGAGCCATTCAGAGGTCTCTTTCTGGGACTGTTCTT
CATTACGACTGGTATGTCGCTTGATGTTTCGCTGTTCTTCACAGAACCTA
TGCAAATCAGCTTTCTCATTGCTTCGTTGATTTTCTGGAAGACGGCAATT
TGTACGCTTATCGGCCTCCCGTTCGGCTTGTCCTTGGCAGAGTCGCTGCG
TGTGGGTCTTTTGCTCGGGCAAGGTAGTGAGTTTGCTTTTGTTTTGTTTG
CGCTGGCAAACAAGCTCGGATTTCTGCCCGATGACGTGAACTCCTTCTTG
GTGACAACAGTTGTTGCCTCAATGTCGTTGACTCCTCTCCTGTATGAAGG
TGGGATATGGGTCGGGCGTCAAGTAGATAAGCTTGTTGAATCTTCGGGGG
GAACCGTGACTACGGAAGCTACAATGCAGGAGGTCGCTGAACCAGATAGC
AATTTCGTGCTCATCTGTGGTTTCGGACCTGTCGGAAGAGTGGTGGGAAG
GATGCTTTCCAGGAAATTTATTCGTTGGGTTGCCATCGATATCGACGTGA
ATCGTGTAAGAAAGGCCGTTGATTCAAATCTTCCTGTCGTTTACGGCGAT
AGTAACCGGCCATCCGAATTCTTGGAAGCAAATGGTCTTTCTACCCCAAG
TGCTTTTGTGATAACAATTTCGGATGACGAACTGGTTGACGACACGCTTA
GTGCAATCAGATCATTTTTCCCGGACAGACCCGTATATTTGCGTGCGAAG
AATGTGCAGCAGCAAAAGGAATACCTGCGTCGTGGGGCACGCGCCATGTA
CCCGGAGTCCTTCGAGACTAGTTTGCAGCTCGGTCAAAGTGTTCTAGAGG
GTTTCAACACGTCAAAAGTGGATATCAAGTCAATTAAGGCGGAGGTTAGA
GGAGACAGTGGTCTGGAAGGAGCGTTTGAAGAATATGAAGAATGGTTCAA
GAAAAACATTCGCAATCCTGGTGATGTGCGAGGCCATGACGAGGCTACAG
GAACCAAGAAAGCAGCCAGAGAGAGTGGTTCTACTCACGTTGTTTTGGCA
AAGCAAAACTCGTCGCGAAGAAAAGAAGACAGTGAACCAAAAATAGGTAA
CGGAATAGCATCCCCAACAGACAAAACGTGA