Ggra2730.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra2730.t1
Unique NameGgra2730.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length242
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000005_piloncontigtig00000005_pilon:1372396..1373121 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog81824.XP_001746328.1
Preferred nameSRV2
PFAMsCAP_C,CAP_N
Max annot lvl33154|Opisthokonta
KEGG koko:K17261
GOsGO:0000902,GO:0000935,GO:0003674,GO:0003779,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005856,GO:0005937,GO:0005938,GO:0006996,GO:0007010,GO:0007015,GO:0007154,GO:0007163,GO:0007165,GO:0007264,GO:0007265,GO:0008064,GO:0008092,GO:0008150,GO:0008154,GO:0008179,GO:0009653,GO:0009987,GO:0010638,GO:0015629,GO:0016043,GO:0019899,GO:0022411,GO:0023052,GO:0030029,GO:0030036,GO:0030042,GO:0030427,GO:0030428,GO:0030479,GO:0030832,GO:0030834,GO:0030836,GO:0030863,GO:0030864,GO:0031135,GO:0031137,GO:0031138,GO:0031279,GO:0032153,GO:0032155,GO:0032502,GO:0032535,GO:0032956,GO:0032970,GO:0032984,GO:0032989,GO:0033043,GO:0035556,GO:0035838,GO:0042995,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043243,GO:0043244,GO:0043332,GO:0043624,GO:0043900,GO:0043901,GO:0043933,GO:0044422,GO:0044424,GO:0044430,GO:0044444,GO:0044446,GO:0044448,GO:0044463,GO:0044464,GO:0045761,GO:0046999,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048856,GO:0048869,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051014,GO:0051128,GO:0051130,GO:0051261,GO:0051286,GO:0051339,GO:0051493,GO:0051495,GO:0051716,GO:0061645,GO:0065007,GO:0065008,GO:0065009,GO:0071840,GO:0071944,GO:0090066,GO:0097435,GO:0099568,GO:0110053,GO:0120025,GO:0120038,GO:1901879,GO:1901881,GO:1902903,GO:1902905,GO:2000241,GO:2000242
Evalue8.4e-38
EggNOG OGsCOG3268@1|root,KOG2675@1|root,KOG2675@2759|Eukaryota,KOG2733@2759|Eukaryota,38CGH@33154|Opisthokonta
DescriptionBelongs to the CAP family
COG categoryTZ
BRITEko00000,ko04131,ko04147
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra2730Ggra2730Gracilaria gracilis GNS1m malegenetig00000005_pilon 1372396..1373121 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2730.t1.start1Ggra2730.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000005_pilon 1372396..1372398 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2730.t1.CDS1Ggra2730.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000005_pilon 1372396..1373121 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2730.t1.exon1Ggra2730.t1.exon1Gracilaria gracilis GNS1m maleexontig00000005_pilon 1372396..1373121 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2730.t1.stop1Ggra2730.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000005_pilon 1373119..1373121 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2730.t1Ggra2730.t1Gracilaria gracilis GNS1m malepolypeptidetig00000005_pilon 1372396..1373121 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra2730.t1 ID=Ggra2730.t1|Name=Ggra2730.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=242bp
MSGPPAPPPPPPPPPPPAPSAGGGEDMASALFAEINALGEKGARAGLKKA
TRGPVNEEIPTVGKPKPQPAAPAKPTTAPAKKPVCELAGKKWSVEFQKDN
QELVVEVTSMKHTVYVYKCEKSIIQVKGKCNSISIDSCKKVDLVFEDALS
QVEIVNSDSVRVQCTGNAPSINIDGCNSVTYFMSEASVEKAMVITSKSAA
INLIRPKPEDPDDIIETPIPEQFCTTFKDGEFVTEAVDHDD*
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spliced messenger RNA

>Ggra2730.t1 ID=Ggra2730.t1|Name=Ggra2730.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=726bp|location=Sequence derived from alignment at tig00000005_pilon:1372396..1373121+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCTGGTccgcctgccccgcctccaccgccgccgccgccaccaccacc
agccccgtctgccggcgGTGGCGAGGATATGGCCAGTGCCTTGTTCGCCG
AGATCAATGCTCTCGGAGAAAAGGGCGCCCGTGCCGGCTTGAAGAAGGCC
ACCCGTGGTCCTGTCAATGAGGAGATTCCCACTGTTGGAAAGCCGAAGCC
GCAACCGGCAGCTCCTGCGAAACCTACCACCGCTCCTGCCAAAAAGCCTG
TGTGCGAGTTGGCTGGAAAGAAATGGTCTGTCGAGTTTCAGAAAGACAAT
CAAGAGCTCGTCGTCGAGGTTACGAGCATGAAGCACACCGTTTATGTGTA
CAAGTGTGAGAAGTCTATCATTCAGGTGAAGGGTAAATGTAACTCCATTT
CCATCGACTCGTGTAAGAAGGTCGATCTTGTCTTCGAGGATGCCCTTTCG
CAGGTCGAGATCGTCAATTCAGACTCCGTTCGAGTGCAGTGTACTGGCAA
TGCCCCAAGCATCAACATTGATGGATGTAACAGTGTCACTTACTTCATGT
CCGAGGCTTCTGTGGAGAAGGCTATGGTTATCACATCGAAGAGTGCAGCC
ATCAATCTCATTCGCCCCAAGCCGGAAGACCCAGATGACATTATCGAAAC
ACCGATCCCAGAACAATTCTGCACCACCTTCAAGGATGGTGAGTTTGTTA
CAGAGGCTGTTGACCATGATGACTAA
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protein sequence of Ggra2730.t1

>Ggra2730.t1 ID=Ggra2730.t1|Name=Ggra2730.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=242bp
MSGPPAPPPPPPPPPPPAPSAGGGEDMASALFAEINALGEKGARAGLKKA
TRGPVNEEIPTVGKPKPQPAAPAKPTTAPAKKPVCELAGKKWSVEFQKDN
QELVVEVTSMKHTVYVYKCEKSIIQVKGKCNSISIDSCKKVDLVFEDALS
QVEIVNSDSVRVQCTGNAPSINIDGCNSVTYFMSEASVEKAMVITSKSAA
INLIRPKPEDPDDIIETPIPEQFCTTFKDGEFVTEAVDHDD*
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mRNA from alignment at tig00000005_pilon:1372396..1373121+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra2730.t1 ID=Ggra2730.t1|Name=Ggra2730.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=726bp|location=Sequence derived from alignment at tig00000005_pilon:1372396..1373121+ (Gracilaria gracilis GNS1m male)
ATGTCTGGTccgcctgccccgcctccaccgccgccgccgccaccaccacc
agccccgtctgccggcgGTGGCGAGGATATGGCCAGTGCCTTGTTCGCCG
AGATCAATGCTCTCGGAGAAAAGGGCGCCCGTGCCGGCTTGAAGAAGGCC
ACCCGTGGTCCTGTCAATGAGGAGATTCCCACTGTTGGAAAGCCGAAGCC
GCAACCGGCAGCTCCTGCGAAACCTACCACCGCTCCTGCCAAAAAGCCTG
TGTGCGAGTTGGCTGGAAAGAAATGGTCTGTCGAGTTTCAGAAAGACAAT
CAAGAGCTCGTCGTCGAGGTTACGAGCATGAAGCACACCGTTTATGTGTA
CAAGTGTGAGAAGTCTATCATTCAGGTGAAGGGTAAATGTAACTCCATTT
CCATCGACTCGTGTAAGAAGGTCGATCTTGTCTTCGAGGATGCCCTTTCG
CAGGTCGAGATCGTCAATTCAGACTCCGTTCGAGTGCAGTGTACTGGCAA
TGCCCCAAGCATCAACATTGATGGATGTAACAGTGTCACTTACTTCATGT
CCGAGGCTTCTGTGGAGAAGGCTATGGTTATCACATCGAAGAGTGCAGCC
ATCAATCTCATTCGCCCCAAGCCGGAAGACCCAGATGACATTATCGAAAC
ACCGATCCCAGAACAATTCTGCACCACCTTCAAGGATGGTGAGTTTGTTA
CAGAGGCTGTTGACCATGATGACTAA
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Coding sequence (CDS) from alignment at tig00000005_pilon:1372396..1373121+

>Ggra2730.t1 ID=Ggra2730.t1|Name=Ggra2730.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=726bp|location=Sequence derived from alignment at tig00000005_pilon:1372396..1373121+ (Gracilaria gracilis GNS1m male)
ATGTCTGGTccgcctgccccgcctccaccgccgccgccgccaccaccacc
agccccgtctgccggcgGTGGCGAGGATATGGCCAGTGCCTTGTTCGCCG
AGATCAATGCTCTCGGAGAAAAGGGCGCCCGTGCCGGCTTGAAGAAGGCC
ACCCGTGGTCCTGTCAATGAGGAGATTCCCACTGTTGGAAAGCCGAAGCC
GCAACCGGCAGCTCCTGCGAAACCTACCACCGCTCCTGCCAAAAAGCCTG
TGTGCGAGTTGGCTGGAAAGAAATGGTCTGTCGAGTTTCAGAAAGACAAT
CAAGAGCTCGTCGTCGAGGTTACGAGCATGAAGCACACCGTTTATGTGTA
CAAGTGTGAGAAGTCTATCATTCAGGTGAAGGGTAAATGTAACTCCATTT
CCATCGACTCGTGTAAGAAGGTCGATCTTGTCTTCGAGGATGCCCTTTCG
CAGGTCGAGATCGTCAATTCAGACTCCGTTCGAGTGCAGTGTACTGGCAA
TGCCCCAAGCATCAACATTGATGGATGTAACAGTGTCACTTACTTCATGT
CCGAGGCTTCTGTGGAGAAGGCTATGGTTATCACATCGAAGAGTGCAGCC
ATCAATCTCATTCGCCCCAAGCCGGAAGACCCAGATGACATTATCGAAAC
ACCGATCCCAGAACAATTCTGCACCACCTTCAAGGATGGTGAGTTTGTTA
CAGAGGCTGTTGACCATGATGACTAA
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