Ggra2726.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra2726.t1
Unique NameGgra2726.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length255
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000005_piloncontigtig00000005_pilon:1365970..1366897 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog44689.DDB0266485
PFAMsUNC-50
Max annot lvl554915|Amoebozoa
GOsGO:0000139,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005794,GO:0012505,GO:0016020,GO:0016021,GO:0030173,GO:0031090,GO:0031224,GO:0031228,GO:0031300,GO:0031301,GO:0031984,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044444,GO:0044446,GO:0044464,GO:0098588,GO:0098791
Evalue4.54e-87
EggNOG OGsKOG3012@1|root,KOG3012@2759|Eukaryota,3X93T@554915|Amoebozoa
DescriptionUNC-50 family
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra2726Ggra2726Gracilaria gracilis GNS1m malegenetig00000005_pilon 1365970..1366897 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2726.t1Ggra2726.t1Gracilaria gracilis GNS1m malepolypeptidetig00000005_pilon 1365970..1366897 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2726.t1.stop1Ggra2726.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000005_pilon 1365970..1365972 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2726.t1.CDS1Ggra2726.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000005_pilon 1365970..1366508 -
Ggra2726.t1.CDS2Ggra2726.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000005_pilon 1366610..1366781 -
Ggra2726.t1.CDS3Ggra2726.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000005_pilon 1366844..1366897 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2726.t1.exon1Ggra2726.t1.exon1Gracilaria gracilis GNS1m maleexontig00000005_pilon 1365970..1366508 -
Ggra2726.t1.exon2Ggra2726.t1.exon2Gracilaria gracilis GNS1m maleexontig00000005_pilon 1366610..1366781 -
Ggra2726.t1.exon3Ggra2726.t1.exon3Gracilaria gracilis GNS1m maleexontig00000005_pilon 1366844..1366897 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2726.t1.intron1Ggra2726.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000005_pilon 1366509..1366609 -
Ggra2726.t1.intron2Ggra2726.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000005_pilon 1366782..1366843 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2726.t1.start1Ggra2726.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000005_pilon 1366895..1366897 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra2726.t1 ID=Ggra2726.t1|Name=Ggra2726.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=255bp
MSSTISLPLYGAKSANSSIGGSSLQMPEYVRRFFQYPQMDIDYTLWQMLY
LCIAPSRVYRTTKYHKQTKNQWARDDPAFVAIMVYFMAISSLGYAVAFHK
NISGFFKTILYAVVVDFGFVGVLAATLGWYVANQYLRIESAGSHTTDQKV
EWLYAFDVHCNSFFPFFILLYVLQYFLLLIFMRDGYVFTLLANAMYALAF
GYYFYVTFLGYDVLPFLQHTTVFLYPIIAVAFIFLITTLVKFNMCVFVMN
AYFG*
back to top

spliced messenger RNA

>Ggra2726.t1 ID=Ggra2726.t1|Name=Ggra2726.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=765bp|location=Sequence derived from alignment at tig00000005_pilon:1365970..1366897- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCTAGTACGATCAGCCTTCCGCTTTACGGCGCAAAGAGTGCAAATAG
TTCGATAGGTGGGAGTTCTCTTCAAATGCCCGAATATGTGCGCCGATTCT
TCCAATACCCTCAGATGGACATTGACTACACTTTGTGGCAAATGCTGTAC
CTCTGTATAGCACCATCGCGCGTGTATCGAACGACCAAATATCACAAGCA
AACCAAGAACCAATGGGCTCGAGACGATCCCGCATTCGTTGCCATAATGG
TGTACTTCATGGCGATTTCATCTCTTGGGTACGCAGTTGCCTTTCACAAA
AACATTTCTGGCTTCTTTAAAACTATCTTGTATGCCGTTGTAGTTGACTT
CGGCTTTGTTGGTGTGTTGGCAGCTACTCTTGGATGGTATGTGGCGAACC
AATACTTGCGGATAGAAAGCGCAGGAAGTCATACAACCGATCAGAAAGTG
GAATGGCTCTACGCCTTTGACGTTCACTGCAACTCGTTCTTTCCCTTCTT
CATTTTGCTGTATGTTTTGCAGTACTTTCTACTCCTTATATTTATGAGGG
ATGGTTATGTGTTTACCTTGCTTGCCAATGCAATGTACGCTCTTGCTTTC
GGGTATTACTTTTACGTCACTTTCCTTGGTTATGATGTTCTTCCGTTTCT
GCAACATACCACGGTATTCTTATATCCGATTATTGCTGTCGCGTTCATTT
TCCTAATCACCACCCTAGTCAAGTTCAATATGTGCGTTTTTGTCATGAAT
GCCTACTTCGGATAG
back to top

protein sequence of Ggra2726.t1

>Ggra2726.t1 ID=Ggra2726.t1|Name=Ggra2726.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=255bp
MSSTISLPLYGAKSANSSIGGSSLQMPEYVRRFFQYPQMDIDYTLWQMLY
LCIAPSRVYRTTKYHKQTKNQWARDDPAFVAIMVYFMAISSLGYAVAFHK
NISGFFKTILYAVVVDFGFVGVLAATLGWYVANQYLRIESAGSHTTDQKV
EWLYAFDVHCNSFFPFFILLYVLQYFLLLIFMRDGYVFTLLANAMYALAF
GYYFYVTFLGYDVLPFLQHTTVFLYPIIAVAFIFLITTLVKFNMCVFVMN
AYFG*
back to top

mRNA from alignment at tig00000005_pilon:1365970..1366897-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra2726.t1 ID=Ggra2726.t1|Name=Ggra2726.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=928bp|location=Sequence derived from alignment at tig00000005_pilon:1365970..1366897- (Gracilaria gracilis GNS1m male)
ATGTCTAGTACGATCAGCCTTCCGCTTTACGGCGCAAAGAGTGCAAATAG
TTCGGTACGTGTGTCTGGATAATAGTTTGCGTTGCTCTATGCTGCTTTCA
CTGACATCGAATATAGATAGGTGGGAGTTCTCTTCAAATGCCCGAATATG
TGCGCCGATTCTTCCAATACCCTCAGATGGACATTGACTACACTTTGTGG
CAAATGCTGTACCTCTGTATAGCACCATCGCGCGTGTATCGAACGACCAA
ATATCACAAGCAAACCAAGAACCAATGGGCTCGAGACGGTACGCATGTCA
ATCTAATATTGCTCACACACATGGGAAGAGTAAGGGTTTCCCTCCACTAT
TTGGCACCTTTACTGACGCTAGAATCCAATATCTCACAGATCCCGCATTC
GTTGCCATAATGGTGTACTTCATGGCGATTTCATCTCTTGGGTACGCAGT
TGCCTTTCACAAAAACATTTCTGGCTTCTTTAAAACTATCTTGTATGCCG
TTGTAGTTGACTTCGGCTTTGTTGGTGTGTTGGCAGCTACTCTTGGATGG
TATGTGGCGAACCAATACTTGCGGATAGAAAGCGCAGGAAGTCATACAAC
CGATCAGAAAGTGGAATGGCTCTACGCCTTTGACGTTCACTGCAACTCGT
TCTTTCCCTTCTTCATTTTGCTGTATGTTTTGCAGTACTTTCTACTCCTT
ATATTTATGAGGGATGGTTATGTGTTTACCTTGCTTGCCAATGCAATGTA
CGCTCTTGCTTTCGGGTATTACTTTTACGTCACTTTCCTTGGTTATGATG
TTCTTCCGTTTCTGCAACATACCACGGTATTCTTATATCCGATTATTGCT
GTCGCGTTCATTTTCCTAATCACCACCCTAGTCAAGTTCAATATGTGCGT
TTTTGTCATGAATGCCTACTTCGGATAG
back to top

Coding sequence (CDS) from alignment at tig00000005_pilon:1365970..1366897-

>Ggra2726.t1 ID=Ggra2726.t1|Name=Ggra2726.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=765bp|location=Sequence derived from alignment at tig00000005_pilon:1365970..1366897- (Gracilaria gracilis GNS1m male)
ATGTCTAGTACGATCAGCCTTCCGCTTTACGGCGCAAAGAGTGCAAATAG
TTCGATAGGTGGGAGTTCTCTTCAAATGCCCGAATATGTGCGCCGATTCT
TCCAATACCCTCAGATGGACATTGACTACACTTTGTGGCAAATGCTGTAC
CTCTGTATAGCACCATCGCGCGTGTATCGAACGACCAAATATCACAAGCA
AACCAAGAACCAATGGGCTCGAGACGATCCCGCATTCGTTGCCATAATGG
TGTACTTCATGGCGATTTCATCTCTTGGGTACGCAGTTGCCTTTCACAAA
AACATTTCTGGCTTCTTTAAAACTATCTTGTATGCCGTTGTAGTTGACTT
CGGCTTTGTTGGTGTGTTGGCAGCTACTCTTGGATGGTATGTGGCGAACC
AATACTTGCGGATAGAAAGCGCAGGAAGTCATACAACCGATCAGAAAGTG
GAATGGCTCTACGCCTTTGACGTTCACTGCAACTCGTTCTTTCCCTTCTT
CATTTTGCTGTATGTTTTGCAGTACTTTCTACTCCTTATATTTATGAGGG
ATGGTTATGTGTTTACCTTGCTTGCCAATGCAATGTACGCTCTTGCTTTC
GGGTATTACTTTTACGTCACTTTCCTTGGTTATGATGTTCTTCCGTTTCT
GCAACATACCACGGTATTCTTATATCCGATTATTGCTGTCGCGTTCATTT
TCCTAATCACCACCCTAGTCAAGTTCAATATGTGCGTTTTTGTCATGAAT
GCCTACTTCGGATAG
back to top