Ggra2710.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra2710.t1
Unique NameGgra2710.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length450
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000005_piloncontigtig00000005_pilon:1326075..1327712 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog4081.Solyc06g036300.2.1
PFAMsMyb_DNA-binding
Max annot lvl35493|Streptophyta
GOsGO:0001101,GO:0003674,GO:0003700,GO:0006355,GO:0006950,GO:0006970,GO:0008150,GO:0009628,GO:0009651,GO:0009719,GO:0009723,GO:0009725,GO:0009737,GO:0009739,GO:0009751,GO:0009753,GO:0009889,GO:0010033,GO:0010035,GO:0010038,GO:0010468,GO:0010556,GO:0014070,GO:0019219,GO:0019222,GO:0031323,GO:0031326,GO:0033993,GO:0042221,GO:0042493,GO:0042752,GO:0046677,GO:0046686,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051252,GO:0060255,GO:0065007,GO:0080090,GO:0097305,GO:0140110,GO:1901700,GO:1903506,GO:2000112,GO:2001141
Evalue5.02e-28
EggNOG OGsKOG0724@1|root,KOG0724@2759|Eukaryota,37MTA@33090|Viridiplantae,3GDH5@35493|Streptophyta,44E04@71274|asterids
DescriptionSANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains
COG categoryK
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra2710Ggra2710Gracilaria gracilis GNS1m malegenetig00000005_pilon 1326075..1327712 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2710.t1Ggra2710.t1Gracilaria gracilis GNS1m malepolypeptidetig00000005_pilon 1326075..1327712 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2710.t1.stop1Ggra2710.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000005_pilon 1326075..1326077 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2710.t1.CDS1Ggra2710.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000005_pilon 1326075..1326745 -
Ggra2710.t1.CDS2Ggra2710.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000005_pilon 1327034..1327712 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2710.t1.exon1Ggra2710.t1.exon1Gracilaria gracilis GNS1m maleexontig00000005_pilon 1326075..1326745 -
Ggra2710.t1.exon2Ggra2710.t1.exon2Gracilaria gracilis GNS1m maleexontig00000005_pilon 1327034..1327712 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2710.t1.intron1Ggra2710.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000005_pilon 1326746..1327033 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2710.t1.start1Ggra2710.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000005_pilon 1327710..1327712 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra2710.t1 ID=Ggra2710.t1|Name=Ggra2710.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=450bp
MSDPSRASQPRAIQSTQPKVSAPDAIAKSSDNPSTPPAAKRTATVGPMNP
APSPSPSQSPPAPPRTKSESAPTTPAKRGGKNSASSSQDQDKKQSGATGP
PAKKPRKKYVITKTREIWTPEEHNLFLDALKKYGRSWKQIEGHVRTKNVI
QIRSHAQKYFLKVQKNNTGEHIPPPRPKRRQNAANASIPASASQQTGLSR
PQQLPVPLSASMPTQPPHPMAFAAMSAFDSQQPFLQMMQHQNAAGKAVPV
AGATSAPVQSASRTQGTARNTPNLVKRESVISHNSPMSLDTPKKVIITPD
GTHVKAERIPSSGGRPPSGRSKRPADRMNIDPEPGGSALVGHAMTTRSTN
INGTNMENDGDFSSAGESIAMSPDFMRIYGFFATVIDPSEVLDIPHVVEH
SDLSRLDWEIIKLLVKNLEVNVESAVFQRQIRETCSQRLQTQQRQEHQQ*
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spliced messenger RNA

>Ggra2710.t1 ID=Ggra2710.t1|Name=Ggra2710.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1350bp|location=Sequence derived from alignment at tig00000005_pilon:1326075..1327712- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCCGACCCCAGCCGTGCCAGTCAACCTCGTGCCATTCAATCCACACA
ACCAAAAGTCTCGGCCCCAGATGCGATCGCCAAGTCGTCGGACAATCCCT
CTACACCGCCCGCTGCCAAGCGCACCGCAACTGTAGGCCCAATGAACCCC
GCGCCGTCGCCGTCCCCATCCCAGTCGCCCCCCGCGCCCCCAAGAACGAA
ATCCGAGTCGGCGCCGACAACGCCGGCCAAACGAGGCGGCAAAAACAGCG
CCTCCTCCTCTCAGGATCAAGACAAGAAACAGTCCGGGGCAACCGGCCCG
CCCGCGAAAAAGCCCCGAAAGAAGTACGTCATCACAAAGACCAGAGAGAT
TTGGACTCCAGAGGAGCACAATCTTTTCCTCGATGCATTAAAGAAGTACG
GCCGCTCTTGGAAACAGATTGAAGGCCATGTGCGCACCAAGAACGTTATT
CAGATTCGGTCTCATGCCCAGAAGTACTTTCTCAAGGTCCAGAAGAACAA
CACTGGCGAGCATATACCCCCACCCAGACCCAAGCGCAGGCAGAATGCTG
CTAATGCCTCCATCCCTGCTTCTGCGTCACAGCAGACAGGTCTATCTCGA
CCGCAACAGCTTCCTGTACCGCTTTCCGCTTCCATGCCAACTCAACCGCC
ACATCCGATGGCATTTGCAGCTATGTCGGCGTTTGATAGTCAACAGCCGT
TTCTCCAGATGATGCAACACCAAAATGCGGCAGGGAAAGCAGTCCCAGTC
GCTGGTGCGACGTCTGCTCCTGTGCAAAGCGCATCCCGCACACAAGGGAC
TGCGAGAAATACTCCGAATCTTGTTAAACGAGAATCTGTGATAAGTCATA
ACTCGCCGATGAGCTTGGACACACCGAAAAAGGTCATTATCACACCGGAC
GGCACTCATGTAAAGGCCGAGCGAATACCCTCCAGTGGTGGACGGCCCCC
TTCCGGTAGAAGCAAGAGACCCGCAGACCGCATGAATATCGACCCTGAAC
CTGGCGGATCAGCTTTAGTTGGACATGCCATGACGACTAGGTCGACAAAT
ATAAACGGAACAAATATGGAAAACGATGGGGATTTCAGCAGTGCCGGAGA
GAGTATTGCGATGAGTCCTGATTTTATGCGTATCTACGGGTTCTTTGCAA
CTGTTATCGATCCGTCTGAAGTGCTGGACATTCCGCATGTTGTTGAACAC
TCAGACCTCAGTCGGCTCGACTGGGAGATAATCAAGCTGCTCGTCAAAAA
CTTAGAAGTGAATGTAGAGAGTGCTGTATTTCAGCGACAAATACGCGAGA
CGTGTAGTCAACGACTTCAGACTCAACAACGTCAAGAACATCAACAGTGA
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protein sequence of Ggra2710.t1

>Ggra2710.t1 ID=Ggra2710.t1|Name=Ggra2710.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=450bp
MSDPSRASQPRAIQSTQPKVSAPDAIAKSSDNPSTPPAAKRTATVGPMNP
APSPSPSQSPPAPPRTKSESAPTTPAKRGGKNSASSSQDQDKKQSGATGP
PAKKPRKKYVITKTREIWTPEEHNLFLDALKKYGRSWKQIEGHVRTKNVI
QIRSHAQKYFLKVQKNNTGEHIPPPRPKRRQNAANASIPASASQQTGLSR
PQQLPVPLSASMPTQPPHPMAFAAMSAFDSQQPFLQMMQHQNAAGKAVPV
AGATSAPVQSASRTQGTARNTPNLVKRESVISHNSPMSLDTPKKVIITPD
GTHVKAERIPSSGGRPPSGRSKRPADRMNIDPEPGGSALVGHAMTTRSTN
INGTNMENDGDFSSAGESIAMSPDFMRIYGFFATVIDPSEVLDIPHVVEH
SDLSRLDWEIIKLLVKNLEVNVESAVFQRQIRETCSQRLQTQQRQEHQQ*
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mRNA from alignment at tig00000005_pilon:1326075..1327712-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra2710.t1 ID=Ggra2710.t1|Name=Ggra2710.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1638bp|location=Sequence derived from alignment at tig00000005_pilon:1326075..1327712- (Gracilaria gracilis GNS1m male)
ATGTCCGACCCCAGCCGTGCCAGTCAACCTCGTGCCATTCAATCCACACA
ACCAAAAGTCTCGGCCCCAGATGCGATCGCCAAGTCGTCGGACAATCCCT
CTACACCGCCCGCTGCCAAGCGCACCGCAACTGTAGGCCCAATGAACCCC
GCGCCGTCGCCGTCCCCATCCCAGTCGCCCCCCGCGCCCCCAAGAACGAA
ATCCGAGTCGGCGCCGACAACGCCGGCCAAACGAGGCGGCAAAAACAGCG
CCTCCTCCTCTCAGGATCAAGACAAGAAACAGTCCGGGGCAACCGGCCCG
CCCGCGAAAAAGCCCCGAAAGAAGTACGTCATCACAAAGACCAGAGAGAT
TTGGACTCCAGAGGAGCACAATCTTTTCCTCGATGCATTAAAGAAGTACG
GCCGCTCTTGGAAACAGATTGAAGGCCATGTGCGCACCAAGAACGTTATT
CAGATTCGGTCTCATGCCCAGAAGTACTTTCTCAAGGTCCAGAAGAACAA
CACTGGCGAGCATATACCCCCACCCAGACCCAAGCGCAGGCAGAATGCTG
CTAATGCCTCCATCCCTGCTTCTGCGTCACAGCAGACAGGTCTATCTCGA
CCGCAACAGCTTCCTGTACCGCTTTCCGCTTCCATGCCAACTCAACCGCC
ACATCCGATGGCATTTGCAGCTATGTCGGGTACCCAAATGTCTCCTGTTC
CCGTCGCGCCACATTTGTACACTCTGCACGCGATGAGTCTGCAAGCCCAA
TACATGAACTTTCGTCACCCGTTGGCCTCCATGCGTCCCCCGCAACAGGC
TACAACTGCGCAAACAGGACGCACCGCAAAAGCCATCTCTCCGCGTCTCA
ATGACCCAAGCGATCTCGTAGCTGTGCAGCAGCGACAGCAGCACCACCAG
CAACAACCGAATGGCGCAATGACGAGCACGCAGATGAATTTTCAAACTGC
GTTGCCTTTGGCTCAAGCGTTTGATAGTCAACAGCCGTTTCTCCAGATGA
TGCAACACCAAAATGCGGCAGGGAAAGCAGTCCCAGTCGCTGGTGCGACG
TCTGCTCCTGTGCAAAGCGCATCCCGCACACAAGGGACTGCGAGAAATAC
TCCGAATCTTGTTAAACGAGAATCTGTGATAAGTCATAACTCGCCGATGA
GCTTGGACACACCGAAAAAGGTCATTATCACACCGGACGGCACTCATGTA
AAGGCCGAGCGAATACCCTCCAGTGGTGGACGGCCCCCTTCCGGTAGAAG
CAAGAGACCCGCAGACCGCATGAATATCGACCCTGAACCTGGCGGATCAG
CTTTAGTTGGACATGCCATGACGACTAGGTCGACAAATATAAACGGAACA
AATATGGAAAACGATGGGGATTTCAGCAGTGCCGGAGAGAGTATTGCGAT
GAGTCCTGATTTTATGCGTATCTACGGGTTCTTTGCAACTGTTATCGATC
CGTCTGAAGTGCTGGACATTCCGCATGTTGTTGAACACTCAGACCTCAGT
CGGCTCGACTGGGAGATAATCAAGCTGCTCGTCAAAAACTTAGAAGTGAA
TGTAGAGAGTGCTGTATTTCAGCGACAAATACGCGAGACGTGTAGTCAAC
GACTTCAGACTCAACAACGTCAAGAACATCAACAGTGA
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Coding sequence (CDS) from alignment at tig00000005_pilon:1326075..1327712-

>Ggra2710.t1 ID=Ggra2710.t1|Name=Ggra2710.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1350bp|location=Sequence derived from alignment at tig00000005_pilon:1326075..1327712- (Gracilaria gracilis GNS1m male)
ATGTCCGACCCCAGCCGTGCCAGTCAACCTCGTGCCATTCAATCCACACA
ACCAAAAGTCTCGGCCCCAGATGCGATCGCCAAGTCGTCGGACAATCCCT
CTACACCGCCCGCTGCCAAGCGCACCGCAACTGTAGGCCCAATGAACCCC
GCGCCGTCGCCGTCCCCATCCCAGTCGCCCCCCGCGCCCCCAAGAACGAA
ATCCGAGTCGGCGCCGACAACGCCGGCCAAACGAGGCGGCAAAAACAGCG
CCTCCTCCTCTCAGGATCAAGACAAGAAACAGTCCGGGGCAACCGGCCCG
CCCGCGAAAAAGCCCCGAAAGAAGTACGTCATCACAAAGACCAGAGAGAT
TTGGACTCCAGAGGAGCACAATCTTTTCCTCGATGCATTAAAGAAGTACG
GCCGCTCTTGGAAACAGATTGAAGGCCATGTGCGCACCAAGAACGTTATT
CAGATTCGGTCTCATGCCCAGAAGTACTTTCTCAAGGTCCAGAAGAACAA
CACTGGCGAGCATATACCCCCACCCAGACCCAAGCGCAGGCAGAATGCTG
CTAATGCCTCCATCCCTGCTTCTGCGTCACAGCAGACAGGTCTATCTCGA
CCGCAACAGCTTCCTGTACCGCTTTCCGCTTCCATGCCAACTCAACCGCC
ACATCCGATGGCATTTGCAGCTATGTCGGCGTTTGATAGTCAACAGCCGT
TTCTCCAGATGATGCAACACCAAAATGCGGCAGGGAAAGCAGTCCCAGTC
GCTGGTGCGACGTCTGCTCCTGTGCAAAGCGCATCCCGCACACAAGGGAC
TGCGAGAAATACTCCGAATCTTGTTAAACGAGAATCTGTGATAAGTCATA
ACTCGCCGATGAGCTTGGACACACCGAAAAAGGTCATTATCACACCGGAC
GGCACTCATGTAAAGGCCGAGCGAATACCCTCCAGTGGTGGACGGCCCCC
TTCCGGTAGAAGCAAGAGACCCGCAGACCGCATGAATATCGACCCTGAAC
CTGGCGGATCAGCTTTAGTTGGACATGCCATGACGACTAGGTCGACAAAT
ATAAACGGAACAAATATGGAAAACGATGGGGATTTCAGCAGTGCCGGAGA
GAGTATTGCGATGAGTCCTGATTTTATGCGTATCTACGGGTTCTTTGCAA
CTGTTATCGATCCGTCTGAAGTGCTGGACATTCCGCATGTTGTTGAACAC
TCAGACCTCAGTCGGCTCGACTGGGAGATAATCAAGCTGCTCGTCAAAAA
CTTAGAAGTGAATGTAGAGAGTGCTGTATTTCAGCGACAAATACGCGAGA
CGTGTAGTCAACGACTTCAGACTCAACAACGTCAAGAACATCAACAGTGA
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