Ggra2689.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra2689.t1
Unique NameGgra2689.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length102
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000005_piloncontigtig00000005_pilon:1239687..1240299 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra2689Ggra2689Gracilaria gracilis GNS1m malegenetig00000005_pilon 1239687..1240299 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2689.t1Ggra2689.t1Gracilaria gracilis GNS1m malepolypeptidetig00000005_pilon 1239687..1240299 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2689.t1.start1Ggra2689.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000005_pilon 1239687..1239689 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2689.t1.CDS1Ggra2689.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000005_pilon 1239687..1239703 +
Ggra2689.t1.CDS2Ggra2689.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000005_pilon 1239856..1240059 +
Ggra2689.t1.CDS3Ggra2689.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000005_pilon 1240215..1240299 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2689.t1.exon1Ggra2689.t1.exon1Gracilaria gracilis GNS1m maleexontig00000005_pilon 1239687..1239703 +
Ggra2689.t1.exon2Ggra2689.t1.exon2Gracilaria gracilis GNS1m maleexontig00000005_pilon 1239856..1240059 +
Ggra2689.t1.exon3Ggra2689.t1.exon3Gracilaria gracilis GNS1m maleexontig00000005_pilon 1240215..1240299 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2689.t1.intron1Ggra2689.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000005_pilon 1239704..1239855 +
Ggra2689.t1.intron2Ggra2689.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000005_pilon 1240060..1240214 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2689.t1.stop1Ggra2689.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000005_pilon 1240297..1240299 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra2689.t1 ID=Ggra2689.t1|Name=Ggra2689.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=102bp
MAELPSWTPDWTHGPIVKVGYQDRVDRGASATVGQVHVPDFVFDDQWKEV
SYPWYPCSQFRSASYEGAFLSLKRHNSTAWIILTVFAVLNRPSSSGVLLT
S*
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spliced messenger RNA

>Ggra2689.t1 ID=Ggra2689.t1|Name=Ggra2689.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=306bp|location=Sequence derived from alignment at tig00000005_pilon:1239687..1240299+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCAGAGCTTCCGAGCTGGACACCAGACTGGACACATGGACCCATAGT
CAAGGTTGGATACCAGGACAGAGTAGATAGAGGGGCCAGCGCCACTGTGG
GGCAAGTTCATGTTCCAGATTTCGTTTTCGACGATCAATGGAAGGAAGTT
TCGTACCCTTGGTACCCTTGTAGTCAGTTCCGCAGTGCAAGCTACGAAGG
TGCCTTCTTATCTCTCAAAAGGCACAATTCCACAGCGTGGATTATTTTGA
CCGTTTTTGCCGTTCTGAACAGACCTTCGTCGTCTGGCGTTCTTCTAACC
AGTTAG
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protein sequence of Ggra2689.t1

>Ggra2689.t1 ID=Ggra2689.t1|Name=Ggra2689.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=102bp
MAELPSWTPDWTHGPIVKVGYQDRVDRGASATVGQVHVPDFVFDDQWKEV
SYPWYPCSQFRSASYEGAFLSLKRHNSTAWIILTVFAVLNRPSSSGVLLT
S*
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mRNA from alignment at tig00000005_pilon:1239687..1240299+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra2689.t1 ID=Ggra2689.t1|Name=Ggra2689.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=613bp|location=Sequence derived from alignment at tig00000005_pilon:1239687..1240299+ (Gracilaria gracilis GNS1m male)
ATGGCAGAGCTTCCGAGGTTTGTTTCGAAGATACGTGTACAACTGTAAAT
GCATCAAACACATTCCATTCATTTGATTGGACAAAAGAACATGAATGGCA
ACTGCTATCCTGTATCCTACCTGGATGCATGAACGTTGCAGGTGCTTAAA
AAGTCAACGTTTTACACAGCTGGACACCAGACTGGACACATGGACCCATA
GTCAAGGTTGGATACCAGGACAGAGTAGATAGAGGGGCCAGCGCCACTGT
GGGGCAAGTTCATGTTCCAGATTTCGTTTTCGACGATCAATGGAAGGAAG
TTTCGTACCCTTGGTACCCTTGTAGTCAGTTCCGCAGTGCAAGCTACGAA
GGTGCCTTCTTATCTCTCAAAAGGTAACATAAGCAGAACGCGAATTTGTC
CATGAACTGAAAACACTGCCCAACCGTCCTATCGCCGACGTCTGCCAAGC
TCATCTATCTAAAAATCCATTCAACCATCTAACTTCTTGCTTGACTACTC
GAAACCGAAACGAACTCGTTTAACGAAGGCACAATTCCACAGCGTGGATT
ATTTTGACCGTTTTTGCCGTTCTGAACAGACCTTCGTCGTCTGGCGTTCT
TCTAACCAGTTAG
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Coding sequence (CDS) from alignment at tig00000005_pilon:1239687..1240299+

>Ggra2689.t1 ID=Ggra2689.t1|Name=Ggra2689.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=306bp|location=Sequence derived from alignment at tig00000005_pilon:1239687..1240299+ (Gracilaria gracilis GNS1m male)
ATGGCAGAGCTTCCGAGCTGGACACCAGACTGGACACATGGACCCATAGT
CAAGGTTGGATACCAGGACAGAGTAGATAGAGGGGCCAGCGCCACTGTGG
GGCAAGTTCATGTTCCAGATTTCGTTTTCGACGATCAATGGAAGGAAGTT
TCGTACCCTTGGTACCCTTGTAGTCAGTTCCGCAGTGCAAGCTACGAAGG
TGCCTTCTTATCTCTCAAAAGGCACAATTCCACAGCGTGGATTATTTTGA
CCGTTTTTGCCGTTCTGAACAGACCTTCGTCGTCTGGCGTTCTTCTAACC
AGTTAG
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