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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Seed ortholog | 2903.EOD14996 |
| Preferred name | CUL1 |
| PFAMs | Cullin,Cullin_Nedd8 |
| Max annot lvl | 2759|Eukaryota |
| KEGG rclass | RC00061 |
| KEGG ko | ko:K03347,ko:K03943 |
| KEGG TC | 3.D.1.6 |
| KEGG Reaction | R11945 |
| KEGG Pathway | ko00190,ko01100,ko04110,ko04111,ko04114,ko04120,ko04141,ko04310,ko04340,ko04341,ko04350,ko04710,ko04714,ko04723,ko04932,ko05010,ko05012,ko05016,ko05168,ko05200,map00190,map01100,map04110,map04111,map04114,map04120,map04141,map04310,map04340,map04341,map04350,map04710,map04714,map04723,map04932,map05010,map05012,map05016,map05168,map05200 |
| KEGG Module | M00143,M00379,M00380,M00381,M00382,M00387,M00407,M00411 |
| GOs | GO:0000003,GO:0000151,GO:0000228,GO:0000793,GO:0000794,GO:0001101,GO:0003006,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0005737,GO:0005819,GO:0005829,GO:0005856,GO:0007154,GO:0007165,GO:0007275,GO:0008150,GO:0009507,GO:0009524,GO:0009526,GO:0009536,GO:0009719,GO:0009725,GO:0009733,GO:0009753,GO:0009755,GO:0009790,GO:0009791,GO:0009793,GO:0009867,GO:0009888,GO:0009941,GO:0009987,GO:0010033,GO:0010087,GO:0010154,GO:0015630,GO:0019005,GO:0019899,GO:0022414,GO:0023052,GO:0031461,GO:0031625,GO:0031967,GO:0031974,GO:0031975,GO:0031981,GO:0032501,GO:0032502,GO:0032870,GO:0032991,GO:0042221,GO:0042752,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044389,GO:0044422,GO:0044424,GO:0044428,GO:0044430,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0048316,GO:0048366,GO:0048367,GO:0048608,GO:0048731,GO:0048827,GO:0048856,GO:0050789,GO:0050794,GO:0050896,GO:0051716,GO:0061458,GO:0065007,GO:0070013,GO:0070887,GO:0071229,GO:0071310,GO:0071395,GO:0071495,GO:0099402,GO:1901700,GO:1901701,GO:1902494,GO:1990234 |
| Evalue | 9.28e-194 |
| EggNOG OGs | COG5647@1|root,KOG2166@2759|Eukaryota |
| EC | 1.6.5.3,1.6.99.3 |
| Description | ubiquitin protein ligase binding |
| COG category | O |
| BRITE | ko00000,ko00001,ko00002,ko01000,ko04121 |
Relationships
This mRNA is a part of the following gene feature(s):
The following start_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| Ggra2679.t1.start1 | Ggra2679.t1.start1 | Gracilaria gracilis GNS1m male | start_codon | tig00000005_pilon 1214448..1214450 + |
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following stop_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| Ggra2679.t1.stop1 | Ggra2679.t1.stop1 | Gracilaria gracilis GNS1m male | stop_codon | tig00000005_pilon 1216863..1216865 + |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >Ggra2679.t1 ID=Ggra2679.t1|Name=Ggra2679.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=806bp MDETGIDIDAGWAIIESRGFEPLAAVLDADGDYRRRHGTDGPKEWNHIYT TVYKMCIQKTPRSYAKDLYQRVQGTLKAYLRSSCLPAIQRTTGEESMLRE LRRRWSNHKLMVKWVTRTFSYIDRYYVKRNEEPSLEHAGYMCFRIEVFDS IVASVRKAALNIVQRERDGDNVDRSLLRGVLDIFVEMGMGKLDVYTSEWE APFLEETADFYRRTSAKWAEEDSFPDFMRKADSNIIEELERATQYLNAQT QERLLRVYEEEVLIVHQKKMLSKDNSGLVALLENNKKDDLMRLYRLYSRV PQGLIPVGQILKNHIQKEGMELVREQRSFIENSKTESTQKGTRDEAQTPT TPSRHGPSSSADKPEYIQRLIALHDRYTELVTNCFSRHTVFTKAMKEAFE RFVNEQVGDSSTAQLFANYCDSLLNSGGRGAKMAEADVETQLEKLVKLFT YLTEKDVFQEFCRKQLAKRLLLDRSHSDDAERHLISKLKQSCGAHFTSKL EGMITDINVSRDTQTQFREWNIALNRESAGAAGRALAGTSSSAVVIGSVE FSVRVLTTGHWPTYSEDTVVLPAQLEVCERRFKEFYDKRTSQRVLRWVHS LGKGSLETSLFTGKRAYQRIELHVSTHQLCILVLFNFTDHVTYAQILETL HDKSRKPNSNARDSEDLLKASLVSLMSRKTPLLLKEPKSREFSPTDMFSL NTQFVSPKRRLTVPMPMARINEQEKEAAHDTVVEDRRHAIEAAIVRVMKQ HKNLDHQRLIMEVSKLCNPVFKPEPRAIKNRIEELISREYLARDDSSNSS YRYLA* back to topspliced messenger RNA >Ggra2679.t1 ID=Ggra2679.t1|Name=Ggra2679.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2418bp|location=Sequence derived from alignment at tig00000005_pilon:1214448..1216865+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.
ATGGATGAGACGGGGATCGACATTGACGCTGGTTGGGCGATCATTGAATC GAGAGGTTTTGAGCCTCTTGCCGCCGTACTTGATGCAGATGGTGATTACA GACGACGCCATGGTACAGATGGGCCAAAGGAATGGAATCACATCTATACT ACTGTTTACAAAATGTGCATTCAGAAGACGCCGCGCTCCTATGCGAAAGA TCTTTATCAACGAGTTCAAGGTACTTTGAAAGCGTATCTTCGATCATCAT GTCTCCCTGCAATTCAACGTACCACTGGAGAGGAATCGATGCTGCGCGAG CTTCGTCGAAGATGGTCCAATCACAAGCTGATGGTGAAATGGGTCACAAG AACCTTCTCGTATATTGATAGATACTATGTTAAGCGTAATGAAGAGCCAT CTCTGGAGCACGCCGGTTATATGTGCTTCAGAATAGAAGTATTCGACAGT ATTGTGGCTTCTGTGAGAAAGGCGGCCCTAAACATCGTACAACGCGAAAG AGACGGCGATAATGTTGATCGCTCTCTACTACGCGGAGTACTAGATATCT TTGTGGAGATGGGAATGGGGAAGCTGGATGTTTACACTTCTGAATGGGAG GCTCCGTTTTTGGAAGAGACTGCTGATTTCTACAGAAGAACATCGGCAAA ATGGGCCGAAGAAGACTCTTTTCCCGATTTCATGAGAAAAGCCGACTCGA ACATCATAGAAGAATTGGAGAGAGCAACACAGTATCTTAACGCCCAAACT CAAGAACGTCTCCTCAGAGTCTACGAGGAGGAAGTTCTGATAGTTCATCA GAAGAAAATGTTGTCTAAAGACAACTCAGGCCTAGTTGCTTTACTAGAGA ACAACAAGAAGGACGATCTCATGCGGCTCTATCGCTTGTACTCTCGCGTA CCTCAAGGATTAATTCCTGTAGGGCAGATCTTGAAAAACCATATTCAGAA GGAGGGAATGGAACTAGTACGAGAGCAAAGGAGTTTCATCGAGAATTCAA AAACTGAGTCAACTCAGAAGGGCACTAGAGACGAGGCGCAAACCCCAACT ACACCGAGTCGTCATGGGCCAAGTAGCTCAGCAGACAAACCGGAATACAT CCAAAGACTCATTGCATTGCATGACCGGTATACAGAGTTGGTCACAAACT GTTTCTCGAGACATACAGTGTTTACCAAGGCAATGAAAGAAGCTTTTGAG AGGTTTGTAAACGAACAAGTTGGCGACTCTTCAACTGCGCAATTGTTTGC GAATTACTGCGACTCACTTTTGAACTCTGGAGGACGAGGTGCAAAAATGG CAGAAGCGGATGTTGAAACACAGCTGGAAAAACTCGTCAAGTTGTTCACA TATCTTACGGAGAAGGATGTGTTCCAAGAGTTCTGTCGGAAACAGTTGGC CAAGCGCTTATTGCTGGATCGCTCGCATTCTGACGACGCCGAGCGACACC TCATCAGTAAGTTGAAACAGAGCTGCGGAGCACATTTCACCTCAAAACTG GAGGGGATGATAACTGATATCAATGTCAGCAGAGATACTCAAACCCAATT TCGAGAATGGAATATTGCGCTCAACCGCGAGTCCGCTGGAGCTGCTGGCC GTGCCTTAGCTGGCACATCATCATCAGCGGTAGTCATCGGTTCAGTGGAG TTCTCTGTCAGAGTTTTGACTACGGGACATTGGCCAACCTATTCTGAGGA CACCGTTGTACTCCCGGCTCAGCTTGAAGTATGCGAACGACGTTTCAAGG AGTTCTACGATAAGAGAACATCCCAACGAGTACTACGATGGGTGCATTCA TTGGGAAAGGGATCTTTAGAAACGAGCTTGTTCACTGGAAAGCGTGCCTA CCAGCGAATCGAGTTACATGTTTCGACTCATCAACTTTGCATTTTGGTTC TGTTCAATTTTACTGATCACGTCACCTATGCGCAGATTCTTGAGACTTTG CATGATAAGTCACGGAAGCCAAACTCGAACGCACGGGATAGCGAAGATTT GTTGAAAGCCTCCCTTGTGTCGTTGATGTCTCGCAAGACCCCTCTGCTTC TCAAGGAGCCCAAAAGCCGTGAGTTCAGTCCTACAGACATGTTTAGCTTA AACACACAGTTTGTGTCTCCGAAGAGGCGCCTTACCGTACCAATGCCAAT GGCAAGAATCAACGAACAAGAAAAAGAGGCTGCGCATGATACTGTTGTTG AAGACAGACGTCATGCTATTGAGGCGGCGATCGTACGGGTCATGAAACAG CATAAGAACCTGGACCACCAACGGCTTATAATGGAAGTAAGCAAGCTATG CAATCCTGTTTTCAAGCCTGAACCACGCGCTATTAAGAACAGGATAGAAG AGCTGATTAGTCGAGAATACTTGGCTCGAGACGATTCAAGCAATTCTAGC TATAGATATCTTGCTTAG back to topprotein sequence of Ggra2679.t1 >Ggra2679.t1 ID=Ggra2679.t1|Name=Ggra2679.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=806bp
MDETGIDIDAGWAIIESRGFEPLAAVLDADGDYRRRHGTDGPKEWNHIYT TVYKMCIQKTPRSYAKDLYQRVQGTLKAYLRSSCLPAIQRTTGEESMLRE LRRRWSNHKLMVKWVTRTFSYIDRYYVKRNEEPSLEHAGYMCFRIEVFDS IVASVRKAALNIVQRERDGDNVDRSLLRGVLDIFVEMGMGKLDVYTSEWE APFLEETADFYRRTSAKWAEEDSFPDFMRKADSNIIEELERATQYLNAQT QERLLRVYEEEVLIVHQKKMLSKDNSGLVALLENNKKDDLMRLYRLYSRV PQGLIPVGQILKNHIQKEGMELVREQRSFIENSKTESTQKGTRDEAQTPT TPSRHGPSSSADKPEYIQRLIALHDRYTELVTNCFSRHTVFTKAMKEAFE RFVNEQVGDSSTAQLFANYCDSLLNSGGRGAKMAEADVETQLEKLVKLFT YLTEKDVFQEFCRKQLAKRLLLDRSHSDDAERHLISKLKQSCGAHFTSKL EGMITDINVSRDTQTQFREWNIALNRESAGAAGRALAGTSSSAVVIGSVE FSVRVLTTGHWPTYSEDTVVLPAQLEVCERRFKEFYDKRTSQRVLRWVHS LGKGSLETSLFTGKRAYQRIELHVSTHQLCILVLFNFTDHVTYAQILETL HDKSRKPNSNARDSEDLLKASLVSLMSRKTPLLLKEPKSREFSPTDMFSL NTQFVSPKRRLTVPMPMARINEQEKEAAHDTVVEDRRHAIEAAIVRVMKQ HKNLDHQRLIMEVSKLCNPVFKPEPRAIKNRIEELISREYLARDDSSNSS YRYLA* back to topmRNA from alignment at tig00000005_pilon:1214448..1216865+ Legend: start_codonpolypeptideCDSexonstop_codon Hold the cursor over a type above to highlight its positions in the sequence below. >Ggra2679.t1 ID=Ggra2679.t1|Name=Ggra2679.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2418bp|location=Sequence derived from alignment at tig00000005_pilon:1214448..1216865+ (Gracilaria gracilis GNS1m male) ATGGATGAGACGGGGATCGACATTGACGCTGGTTGGGCGATCATTGAATC
GAGAGGTTTTGAGCCTCTTGCCGCCGTACTTGATGCAGATGGTGATTACA
GACGACGCCATGGTACAGATGGGCCAAAGGAATGGAATCACATCTATACT
ACTGTTTACAAAATGTGCATTCAGAAGACGCCGCGCTCCTATGCGAAAGA
TCTTTATCAACGAGTTCAAGGTACTTTGAAAGCGTATCTTCGATCATCAT
GTCTCCCTGCAATTCAACGTACCACTGGAGAGGAATCGATGCTGCGCGAG
CTTCGTCGAAGATGGTCCAATCACAAGCTGATGGTGAAATGGGTCACAAG
AACCTTCTCGTATATTGATAGATACTATGTTAAGCGTAATGAAGAGCCAT
CTCTGGAGCACGCCGGTTATATGTGCTTCAGAATAGAAGTATTCGACAGT
ATTGTGGCTTCTGTGAGAAAGGCGGCCCTAAACATCGTACAACGCGAAAG
AGACGGCGATAATGTTGATCGCTCTCTACTACGCGGAGTACTAGATATCT
TTGTGGAGATGGGAATGGGGAAGCTGGATGTTTACACTTCTGAATGGGAG
GCTCCGTTTTTGGAAGAGACTGCTGATTTCTACAGAAGAACATCGGCAAA
ATGGGCCGAAGAAGACTCTTTTCCCGATTTCATGAGAAAAGCCGACTCGA
ACATCATAGAAGAATTGGAGAGAGCAACACAGTATCTTAACGCCCAAACT
CAAGAACGTCTCCTCAGAGTCTACGAGGAGGAAGTTCTGATAGTTCATCA
GAAGAAAATGTTGTCTAAAGACAACTCAGGCCTAGTTGCTTTACTAGAGA
ACAACAAGAAGGACGATCTCATGCGGCTCTATCGCTTGTACTCTCGCGTA
CCTCAAGGATTAATTCCTGTAGGGCAGATCTTGAAAAACCATATTCAGAA
GGAGGGAATGGAACTAGTACGAGAGCAAAGGAGTTTCATCGAGAATTCAA
AAACTGAGTCAACTCAGAAGGGCACTAGAGACGAGGCGCAAACCCCAACT
ACACCGAGTCGTCATGGGCCAAGTAGCTCAGCAGACAAACCGGAATACAT
CCAAAGACTCATTGCATTGCATGACCGGTATACAGAGTTGGTCACAAACT
GTTTCTCGAGACATACAGTGTTTACCAAGGCAATGAAAGAAGCTTTTGAG
AGGTTTGTAAACGAACAAGTTGGCGACTCTTCAACTGCGCAATTGTTTGC
GAATTACTGCGACTCACTTTTGAACTCTGGAGGACGAGGTGCAAAAATGG
CAGAAGCGGATGTTGAAACACAGCTGGAAAAACTCGTCAAGTTGTTCACA
TATCTTACGGAGAAGGATGTGTTCCAAGAGTTCTGTCGGAAACAGTTGGC
CAAGCGCTTATTGCTGGATCGCTCGCATTCTGACGACGCCGAGCGACACC
TCATCAGTAAGTTGAAACAGAGCTGCGGAGCACATTTCACCTCAAAACTG
GAGGGGATGATAACTGATATCAATGTCAGCAGAGATACTCAAACCCAATT
TCGAGAATGGAATATTGCGCTCAACCGCGAGTCCGCTGGAGCTGCTGGCC
GTGCCTTAGCTGGCACATCATCATCAGCGGTAGTCATCGGTTCAGTGGAG
TTCTCTGTCAGAGTTTTGACTACGGGACATTGGCCAACCTATTCTGAGGA
CACCGTTGTACTCCCGGCTCAGCTTGAAGTATGCGAACGACGTTTCAAGG
AGTTCTACGATAAGAGAACATCCCAACGAGTACTACGATGGGTGCATTCA
TTGGGAAAGGGATCTTTAGAAACGAGCTTGTTCACTGGAAAGCGTGCCTA
CCAGCGAATCGAGTTACATGTTTCGACTCATCAACTTTGCATTTTGGTTC
TGTTCAATTTTACTGATCACGTCACCTATGCGCAGATTCTTGAGACTTTG
CATGATAAGTCACGGAAGCCAAACTCGAACGCACGGGATAGCGAAGATTT
GTTGAAAGCCTCCCTTGTGTCGTTGATGTCTCGCAAGACCCCTCTGCTTC
TCAAGGAGCCCAAAAGCCGTGAGTTCAGTCCTACAGACATGTTTAGCTTA
AACACACAGTTTGTGTCTCCGAAGAGGCGCCTTACCGTACCAATGCCAAT
GGCAAGAATCAACGAACAAGAAAAAGAGGCTGCGCATGATACTGTTGTTG
AAGACAGACGTCATGCTATTGAGGCGGCGATCGTACGGGTCATGAAACAG
CATAAGAACCTGGACCACCAACGGCTTATAATGGAAGTAAGCAAGCTATG
CAATCCTGTTTTCAAGCCTGAACCACGCGCTATTAAGAACAGGATAGAAG
AGCTGATTAGTCGAGAATACTTGGCTCGAGACGATTCAAGCAATTCTAGC
TATAGATATCTTGCTTAG back to topCoding sequence (CDS) from alignment at tig00000005_pilon:1214448..1216865+ >Ggra2679.t1 ID=Ggra2679.t1|Name=Ggra2679.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=2418bp|location=Sequence derived from alignment at tig00000005_pilon:1214448..1216865+ (Gracilaria gracilis GNS1m male) ATGGATGAGACGGGGATCGACATTGACGCTGGTTGGGCGATCATTGAATC GAGAGGTTTTGAGCCTCTTGCCGCCGTACTTGATGCAGATGGTGATTACA GACGACGCCATGGTACAGATGGGCCAAAGGAATGGAATCACATCTATACT ACTGTTTACAAAATGTGCATTCAGAAGACGCCGCGCTCCTATGCGAAAGA TCTTTATCAACGAGTTCAAGGTACTTTGAAAGCGTATCTTCGATCATCAT GTCTCCCTGCAATTCAACGTACCACTGGAGAGGAATCGATGCTGCGCGAG CTTCGTCGAAGATGGTCCAATCACAAGCTGATGGTGAAATGGGTCACAAG AACCTTCTCGTATATTGATAGATACTATGTTAAGCGTAATGAAGAGCCAT CTCTGGAGCACGCCGGTTATATGTGCTTCAGAATAGAAGTATTCGACAGT ATTGTGGCTTCTGTGAGAAAGGCGGCCCTAAACATCGTACAACGCGAAAG AGACGGCGATAATGTTGATCGCTCTCTACTACGCGGAGTACTAGATATCT TTGTGGAGATGGGAATGGGGAAGCTGGATGTTTACACTTCTGAATGGGAG GCTCCGTTTTTGGAAGAGACTGCTGATTTCTACAGAAGAACATCGGCAAA ATGGGCCGAAGAAGACTCTTTTCCCGATTTCATGAGAAAAGCCGACTCGA ACATCATAGAAGAATTGGAGAGAGCAACACAGTATCTTAACGCCCAAACT CAAGAACGTCTCCTCAGAGTCTACGAGGAGGAAGTTCTGATAGTTCATCA GAAGAAAATGTTGTCTAAAGACAACTCAGGCCTAGTTGCTTTACTAGAGA ACAACAAGAAGGACGATCTCATGCGGCTCTATCGCTTGTACTCTCGCGTA CCTCAAGGATTAATTCCTGTAGGGCAGATCTTGAAAAACCATATTCAGAA GGAGGGAATGGAACTAGTACGAGAGCAAAGGAGTTTCATCGAGAATTCAA AAACTGAGTCAACTCAGAAGGGCACTAGAGACGAGGCGCAAACCCCAACT ACACCGAGTCGTCATGGGCCAAGTAGCTCAGCAGACAAACCGGAATACAT CCAAAGACTCATTGCATTGCATGACCGGTATACAGAGTTGGTCACAAACT GTTTCTCGAGACATACAGTGTTTACCAAGGCAATGAAAGAAGCTTTTGAG AGGTTTGTAAACGAACAAGTTGGCGACTCTTCAACTGCGCAATTGTTTGC GAATTACTGCGACTCACTTTTGAACTCTGGAGGACGAGGTGCAAAAATGG CAGAAGCGGATGTTGAAACACAGCTGGAAAAACTCGTCAAGTTGTTCACA TATCTTACGGAGAAGGATGTGTTCCAAGAGTTCTGTCGGAAACAGTTGGC CAAGCGCTTATTGCTGGATCGCTCGCATTCTGACGACGCCGAGCGACACC TCATCAGTAAGTTGAAACAGAGCTGCGGAGCACATTTCACCTCAAAACTG GAGGGGATGATAACTGATATCAATGTCAGCAGAGATACTCAAACCCAATT TCGAGAATGGAATATTGCGCTCAACCGCGAGTCCGCTGGAGCTGCTGGCC GTGCCTTAGCTGGCACATCATCATCAGCGGTAGTCATCGGTTCAGTGGAG TTCTCTGTCAGAGTTTTGACTACGGGACATTGGCCAACCTATTCTGAGGA CACCGTTGTACTCCCGGCTCAGCTTGAAGTATGCGAACGACGTTTCAAGG AGTTCTACGATAAGAGAACATCCCAACGAGTACTACGATGGGTGCATTCA TTGGGAAAGGGATCTTTAGAAACGAGCTTGTTCACTGGAAAGCGTGCCTA CCAGCGAATCGAGTTACATGTTTCGACTCATCAACTTTGCATTTTGGTTC TGTTCAATTTTACTGATCACGTCACCTATGCGCAGATTCTTGAGACTTTG CATGATAAGTCACGGAAGCCAAACTCGAACGCACGGGATAGCGAAGATTT GTTGAAAGCCTCCCTTGTGTCGTTGATGTCTCGCAAGACCCCTCTGCTTC TCAAGGAGCCCAAAAGCCGTGAGTTCAGTCCTACAGACATGTTTAGCTTA AACACACAGTTTGTGTCTCCGAAGAGGCGCCTTACCGTACCAATGCCAAT GGCAAGAATCAACGAACAAGAAAAAGAGGCTGCGCATGATACTGTTGTTG AAGACAGACGTCATGCTATTGAGGCGGCGATCGTACGGGTCATGAAACAG CATAAGAACCTGGACCACCAACGGCTTATAATGGAAGTAAGCAAGCTATG CAATCCTGTTTTCAAGCCTGAACCACGCGCTATTAAGAACAGGATAGAAG AGCTGATTAGTCGAGAATACTTGGCTCGAGACGATTCAAGCAATTCTAGC TATAGATATCTTGCTTAG back to top
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