Ggra2672.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra2672.t1
Unique NameGgra2672.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length388
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000005_piloncontigtig00000005_pilon:1195610..1196773 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1365176.N186_00370
PFAMsEpimerase
Max annot lvl28889|Crenarchaeota
Evalue1.29e-35
EggNOG OGsCOG0451@1|root,arCOG01369@2157|Archaea,2XRSX@28889|Crenarchaeota
DescriptionNmrA-like family
COG categoryM
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra2672Ggra2672Gracilaria gracilis GNS1m malegenetig00000005_pilon 1195610..1196773 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2672.t1.start1Ggra2672.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000005_pilon 1195610..1195612 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2672.t1.CDS1Ggra2672.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000005_pilon 1195610..1196773 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2672.t1.exon1Ggra2672.t1.exon1Gracilaria gracilis GNS1m maleexontig00000005_pilon 1195610..1196773 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2672.t1.stop1Ggra2672.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000005_pilon 1196771..1196773 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2672.t1Ggra2672.t1Gracilaria gracilis GNS1m malepolypeptidetig00000005_pilon 1195610..1196773 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra2672.t1 ID=Ggra2672.t1|Name=Ggra2672.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=388bp
MSNASSNTSKQTIVVTGGTGYIGYALLHEIRERLMDAFTPVCIARASSDI
VRLQRLLDYPCTHETVVICDLEDEHSLRNGVKDADIVVHLAGDMDFFPKK
GKKLSLVNVKGTENLLNACAFVAETAERTIRFVYVSSTEAIGRTDGISRA
DETYPLNPESEYGRTKVLAERIVQDYSQRLDTVIVRPTGVYGPDERFFFF
EFMQMVSYGLTVVVPSPMTGRVSFTHIDDVVRGILACATHPSAPGNTYNL
CPNQAETYMSIVQRLADVLKYPRPLLVLPEAIGKILIRIIAPLMNRGKSR
VFIYHPKTVSETVHNREYSNEKIRDELGFEPQYAVLEGIEETLNYELEVG
SIRRSRIPPAFKRCLDFACVLAFAVRRIFLHRHRTIH*
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spliced messenger RNA

>Ggra2672.t1 ID=Ggra2672.t1|Name=Ggra2672.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1164bp|location=Sequence derived from alignment at tig00000005_pilon:1195610..1196773+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCGAATGCATCATCGAATACCTCGAAGCAAACAATCGTTGTCACGGG
CGGAACTGGATATATAGGTTATGCACTTCTACATGAAATCCGAGAGCGTC
TTATGGACGCCTTTACTCCAGTATGTATCGCAAGAGCTTCTTCTGATATA
GTACGACTGCAAAGGCTCTTGGACTATCCGTGCACCCATGAAACAGTTGT
CATTTGTGACCTTGAAGATGAACATTCGTTAAGAAATGGAGTTAAGGATG
CTGACATTGTTGTGCATCTAGCTGGGGATATGGATTTTTTCCCGAAGAAA
GGGAAGAAGCTGTCTCTCGTCAACGTCAAAGGAACTGAGAACCTTTTGAA
TGCATGTGCTTTTGTAGCGGAGACTGCGGAAAGGACGATCCGCTTTGTGT
ATGTCTCTTCTACGGAGGCTATTGGCCGTACGGATGGTATTTCAAGGGCA
GATGAGACATATCCTCTCAATCCGGAATCAGAGTATGGTCGCACGAAGGT
CCTCGCTGAACGAATTGTTCAAGACTACAGTCAGAGATTAGACACGGTTA
TCGTTCGTCCCACTGGGGTTTATGGACCAGACGAACGCTTTTTCTTTTTC
GAATTCATGCAAATGGTGTCGTATGGTCTAACTGTCGTGGTCCCATCGCC
CATGACTGGGCGGGTTTCTTTTACTCACATCGATGATGTTGTTAGAGGTA
TACTGGCGTGCGCGACACACCCATCTGCTCCAGGAAATACCTATAACTTA
TGTCCCAATCAAGCAGAGACATACATGTCAATTGTGCAAAGATTGGCAGA
CGTGCTGAAATATCCTCGTCCTTTACTGGTCTTACCAGAAGCTATCGGCA
AGATTCTAATCCGCATAATTGCCCCGCTCATGAATAGAGGTAAGTCGCGT
GTTTTCATATACCATCCAAAAACGGTCTCCGAAACTGTGCACAACCGTGA
GTATTCCAACGAGAAAATCCGGGATGAACTCGGGTTTGAACCGCAATATG
CTGTTCTAGAAGGAATAGAGGAGACCTTGAACTACGAGCTTGAGGTTGGA
AGTATAAGACGATCAAGAATCCCTCCAGCTTTCAAGAGATGCCTTGACTT
CGCATGTGTTCTGGCTTTTGCTGTTCGTCGAATATTCCTCCATCGTCACA
GGACCATACATTGA
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protein sequence of Ggra2672.t1

>Ggra2672.t1 ID=Ggra2672.t1|Name=Ggra2672.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=388bp
MSNASSNTSKQTIVVTGGTGYIGYALLHEIRERLMDAFTPVCIARASSDI
VRLQRLLDYPCTHETVVICDLEDEHSLRNGVKDADIVVHLAGDMDFFPKK
GKKLSLVNVKGTENLLNACAFVAETAERTIRFVYVSSTEAIGRTDGISRA
DETYPLNPESEYGRTKVLAERIVQDYSQRLDTVIVRPTGVYGPDERFFFF
EFMQMVSYGLTVVVPSPMTGRVSFTHIDDVVRGILACATHPSAPGNTYNL
CPNQAETYMSIVQRLADVLKYPRPLLVLPEAIGKILIRIIAPLMNRGKSR
VFIYHPKTVSETVHNREYSNEKIRDELGFEPQYAVLEGIEETLNYELEVG
SIRRSRIPPAFKRCLDFACVLAFAVRRIFLHRHRTIH*
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mRNA from alignment at tig00000005_pilon:1195610..1196773+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra2672.t1 ID=Ggra2672.t1|Name=Ggra2672.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1164bp|location=Sequence derived from alignment at tig00000005_pilon:1195610..1196773+ (Gracilaria gracilis GNS1m male)
ATGTCGAATGCATCATCGAATACCTCGAAGCAAACAATCGTTGTCACGGG
CGGAACTGGATATATAGGTTATGCACTTCTACATGAAATCCGAGAGCGTC
TTATGGACGCCTTTACTCCAGTATGTATCGCAAGAGCTTCTTCTGATATA
GTACGACTGCAAAGGCTCTTGGACTATCCGTGCACCCATGAAACAGTTGT
CATTTGTGACCTTGAAGATGAACATTCGTTAAGAAATGGAGTTAAGGATG
CTGACATTGTTGTGCATCTAGCTGGGGATATGGATTTTTTCCCGAAGAAA
GGGAAGAAGCTGTCTCTCGTCAACGTCAAAGGAACTGAGAACCTTTTGAA
TGCATGTGCTTTTGTAGCGGAGACTGCGGAAAGGACGATCCGCTTTGTGT
ATGTCTCTTCTACGGAGGCTATTGGCCGTACGGATGGTATTTCAAGGGCA
GATGAGACATATCCTCTCAATCCGGAATCAGAGTATGGTCGCACGAAGGT
CCTCGCTGAACGAATTGTTCAAGACTACAGTCAGAGATTAGACACGGTTA
TCGTTCGTCCCACTGGGGTTTATGGACCAGACGAACGCTTTTTCTTTTTC
GAATTCATGCAAATGGTGTCGTATGGTCTAACTGTCGTGGTCCCATCGCC
CATGACTGGGCGGGTTTCTTTTACTCACATCGATGATGTTGTTAGAGGTA
TACTGGCGTGCGCGACACACCCATCTGCTCCAGGAAATACCTATAACTTA
TGTCCCAATCAAGCAGAGACATACATGTCAATTGTGCAAAGATTGGCAGA
CGTGCTGAAATATCCTCGTCCTTTACTGGTCTTACCAGAAGCTATCGGCA
AGATTCTAATCCGCATAATTGCCCCGCTCATGAATAGAGGTAAGTCGCGT
GTTTTCATATACCATCCAAAAACGGTCTCCGAAACTGTGCACAACCGTGA
GTATTCCAACGAGAAAATCCGGGATGAACTCGGGTTTGAACCGCAATATG
CTGTTCTAGAAGGAATAGAGGAGACCTTGAACTACGAGCTTGAGGTTGGA
AGTATAAGACGATCAAGAATCCCTCCAGCTTTCAAGAGATGCCTTGACTT
CGCATGTGTTCTGGCTTTTGCTGTTCGTCGAATATTCCTCCATCGTCACA
GGACCATACATTGA
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Coding sequence (CDS) from alignment at tig00000005_pilon:1195610..1196773+

>Ggra2672.t1 ID=Ggra2672.t1|Name=Ggra2672.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1164bp|location=Sequence derived from alignment at tig00000005_pilon:1195610..1196773+ (Gracilaria gracilis GNS1m male)
ATGTCGAATGCATCATCGAATACCTCGAAGCAAACAATCGTTGTCACGGG
CGGAACTGGATATATAGGTTATGCACTTCTACATGAAATCCGAGAGCGTC
TTATGGACGCCTTTACTCCAGTATGTATCGCAAGAGCTTCTTCTGATATA
GTACGACTGCAAAGGCTCTTGGACTATCCGTGCACCCATGAAACAGTTGT
CATTTGTGACCTTGAAGATGAACATTCGTTAAGAAATGGAGTTAAGGATG
CTGACATTGTTGTGCATCTAGCTGGGGATATGGATTTTTTCCCGAAGAAA
GGGAAGAAGCTGTCTCTCGTCAACGTCAAAGGAACTGAGAACCTTTTGAA
TGCATGTGCTTTTGTAGCGGAGACTGCGGAAAGGACGATCCGCTTTGTGT
ATGTCTCTTCTACGGAGGCTATTGGCCGTACGGATGGTATTTCAAGGGCA
GATGAGACATATCCTCTCAATCCGGAATCAGAGTATGGTCGCACGAAGGT
CCTCGCTGAACGAATTGTTCAAGACTACAGTCAGAGATTAGACACGGTTA
TCGTTCGTCCCACTGGGGTTTATGGACCAGACGAACGCTTTTTCTTTTTC
GAATTCATGCAAATGGTGTCGTATGGTCTAACTGTCGTGGTCCCATCGCC
CATGACTGGGCGGGTTTCTTTTACTCACATCGATGATGTTGTTAGAGGTA
TACTGGCGTGCGCGACACACCCATCTGCTCCAGGAAATACCTATAACTTA
TGTCCCAATCAAGCAGAGACATACATGTCAATTGTGCAAAGATTGGCAGA
CGTGCTGAAATATCCTCGTCCTTTACTGGTCTTACCAGAAGCTATCGGCA
AGATTCTAATCCGCATAATTGCCCCGCTCATGAATAGAGGTAAGTCGCGT
GTTTTCATATACCATCCAAAAACGGTCTCCGAAACTGTGCACAACCGTGA
GTATTCCAACGAGAAAATCCGGGATGAACTCGGGTTTGAACCGCAATATG
CTGTTCTAGAAGGAATAGAGGAGACCTTGAACTACGAGCTTGAGGTTGGA
AGTATAAGACGATCAAGAATCCCTCCAGCTTTCAAGAGATGCCTTGACTT
CGCATGTGTTCTGGCTTTTGCTGTTCGTCGAATATTCCTCCATCGTCACA
GGACCATACATTGA
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