Ggra2671.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra2671.t1
Unique NameGgra2671.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length422
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000005_piloncontigtig00000005_pilon:1190107..1191372 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005709341.1
PFAMsExo_endo_phos
Max annot lvl2759|Eukaryota
Evalue8.82e-40
EggNOG OGs2DFRS@1|root,2S5SW@2759|Eukaryota
DescriptionEndonuclease/Exonuclease/phosphatase family
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra2671Ggra2671Gracilaria gracilis GNS1m malegenetig00000005_pilon 1190107..1191372 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2671.t1.start1Ggra2671.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000005_pilon 1190107..1190109 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2671.t1.CDS1Ggra2671.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000005_pilon 1190107..1191372 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2671.t1.exon1Ggra2671.t1.exon1Gracilaria gracilis GNS1m maleexontig00000005_pilon 1190107..1191372 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2671.t1.stop1Ggra2671.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000005_pilon 1191370..1191372 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2671.t1Ggra2671.t1Gracilaria gracilis GNS1m malepolypeptidetig00000005_pilon 1190107..1191372 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra2671.t1 ID=Ggra2671.t1|Name=Ggra2671.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=422bp
MDVIDNVSVPWGPPHLATAVTESYSSIPLHTNSEQTRRSDFPKSPFSVFT
KPNRPLPPPFIVLIIFFVAIVVFERYVERAPIVLMSSEENLLESHSMNRP
NTDVVRFMTFNTFIRPVGVGYGDHKDERLRDLLGQLGSFDIVCFQELFTS
SGFRKVKFLQELELVYGFDNYVTSPSPGIEGLFFFPPKIIDGGLVIASRF
DILEADYRTYSRSNILSIDCFVAKGVLYARLAVPMRNTSKCFIHLFTTHM
QANNGLGIDFVTTRQSQLQELVEFVVKKTSSDPGAPIILAGDFNVDGRLD
FYSGSSSLEYQQMMEMLHKVPLTSLLRDILFRANGNKHPVTSAGGLLGNN
QRNERLDYIFFSPGNRSDTRSPCTGTLTDIKSSVRVEQLKISGRPYRTLS
DHYAVVANFKIESKGNCSRNR*
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spliced messenger RNA

>Ggra2671.t1 ID=Ggra2671.t1|Name=Ggra2671.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1266bp|location=Sequence derived from alignment at tig00000005_pilon:1190107..1191372+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGATGTTATCGACAACGTTTCGGTTCCGTGGGGGCCACCTCATTTAGC
GACCGCTGTGACAGAGAGCTACTCCTCGATTCCCCTGCACACTAATAGTG
AGCAAACCAGAAGGTCTGACTTCCCAAAATCCCCGTTTTCTGTGTTCACA
AAGCCCAATCGTCCTCTTCCGCCTCCCTTCATTGTTTTGATCATTTTCTT
CGTGGCGATTGTGGTTTTCGAACGCTATGTAGAGAGGGCACCAATCGTTC
TTATGAGTAGCGAGGAGAATCTTCTTGAGAGCCACTCTATGAATAGACCT
AACACGGATGTTGTGCGTTTTATGACTTTTAACACGTTCATACGACCAGT
CGGTGTCGGTTATGGTGATCACAAGGACGAGCGCCTGCGTGACTTGTTGG
GACAGTTGGGCTCATTTGACATCGTTTGCTTTCAGGAGCTCTTTACTTCC
AGCGGATTTCGGAAAGTAAAGTTTCTCCAAGAGCTTGAGCTGGTCTATGG
TTTTGATAATTACGTAACATCCCCTTCGCCTGGTATAGAAGGGCTGTTCT
TCTTTCCTCCAAAGATTATTGATGGAGGGCTAGTCATCGCCTCTCGATTT
GATATTCTTGAAGCAGACTACCGAACATATTCTAGATCGAACATCCTATC
CATCGACTGTTTCGTCGCCAAAGGAGTGCTTTATGCTCGGCTCGCAGTAC
CTATGCGCAACACAAGTAAGTGCTTCATACACCTTTTCACCACACATATG
CAAGCGAACAATGGGTTGGGTATCGACTTTGTCACAACTCGTCAATCACA
ACTTCAGGAGTTGGTCGAGTTTGTTGTGAAGAAAACTAGCTCTGATCCGG
GTGCCCCCATCATTCTCGCAGGGGATTTCAATGTCGATGGTCGGCTTGAT
TTTTATAGCGGATCTTCGTCACTTGAGTACCAGCAGATGATGGAGATGCT
CCACAAGGTGCCACTCACCTCGTTGCTACGTGACATACTGTTCAGAGCGA
ATGGCAATAAGCATCCCGTGACTAGTGCAGGAGGGCTTTTGGGAAACAAT
CAAAGAAATGAACGGCTTGACTACATATTCTTTAGCCCGGGTAACAGAAG
TGACACCCGTTCACCGTGTACCGGTACCCTGACGGACATAAAGAGTTCTG
TTCGCGTGGAGCAATTGAAGATATCTGGGAGACCCTATCGAACCTTAAGT
GACCATTATGCTGTGGTTGCCAACTTCAAAATTGAGTCAAAAGGCAATTG
TAGTCGCAATCGATGA
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protein sequence of Ggra2671.t1

>Ggra2671.t1 ID=Ggra2671.t1|Name=Ggra2671.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=422bp
MDVIDNVSVPWGPPHLATAVTESYSSIPLHTNSEQTRRSDFPKSPFSVFT
KPNRPLPPPFIVLIIFFVAIVVFERYVERAPIVLMSSEENLLESHSMNRP
NTDVVRFMTFNTFIRPVGVGYGDHKDERLRDLLGQLGSFDIVCFQELFTS
SGFRKVKFLQELELVYGFDNYVTSPSPGIEGLFFFPPKIIDGGLVIASRF
DILEADYRTYSRSNILSIDCFVAKGVLYARLAVPMRNTSKCFIHLFTTHM
QANNGLGIDFVTTRQSQLQELVEFVVKKTSSDPGAPIILAGDFNVDGRLD
FYSGSSSLEYQQMMEMLHKVPLTSLLRDILFRANGNKHPVTSAGGLLGNN
QRNERLDYIFFSPGNRSDTRSPCTGTLTDIKSSVRVEQLKISGRPYRTLS
DHYAVVANFKIESKGNCSRNR*
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mRNA from alignment at tig00000005_pilon:1190107..1191372+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra2671.t1 ID=Ggra2671.t1|Name=Ggra2671.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1266bp|location=Sequence derived from alignment at tig00000005_pilon:1190107..1191372+ (Gracilaria gracilis GNS1m male)
ATGGATGTTATCGACAACGTTTCGGTTCCGTGGGGGCCACCTCATTTAGC
GACCGCTGTGACAGAGAGCTACTCCTCGATTCCCCTGCACACTAATAGTG
AGCAAACCAGAAGGTCTGACTTCCCAAAATCCCCGTTTTCTGTGTTCACA
AAGCCCAATCGTCCTCTTCCGCCTCCCTTCATTGTTTTGATCATTTTCTT
CGTGGCGATTGTGGTTTTCGAACGCTATGTAGAGAGGGCACCAATCGTTC
TTATGAGTAGCGAGGAGAATCTTCTTGAGAGCCACTCTATGAATAGACCT
AACACGGATGTTGTGCGTTTTATGACTTTTAACACGTTCATACGACCAGT
CGGTGTCGGTTATGGTGATCACAAGGACGAGCGCCTGCGTGACTTGTTGG
GACAGTTGGGCTCATTTGACATCGTTTGCTTTCAGGAGCTCTTTACTTCC
AGCGGATTTCGGAAAGTAAAGTTTCTCCAAGAGCTTGAGCTGGTCTATGG
TTTTGATAATTACGTAACATCCCCTTCGCCTGGTATAGAAGGGCTGTTCT
TCTTTCCTCCAAAGATTATTGATGGAGGGCTAGTCATCGCCTCTCGATTT
GATATTCTTGAAGCAGACTACCGAACATATTCTAGATCGAACATCCTATC
CATCGACTGTTTCGTCGCCAAAGGAGTGCTTTATGCTCGGCTCGCAGTAC
CTATGCGCAACACAAGTAAGTGCTTCATACACCTTTTCACCACACATATG
CAAGCGAACAATGGGTTGGGTATCGACTTTGTCACAACTCGTCAATCACA
ACTTCAGGAGTTGGTCGAGTTTGTTGTGAAGAAAACTAGCTCTGATCCGG
GTGCCCCCATCATTCTCGCAGGGGATTTCAATGTCGATGGTCGGCTTGAT
TTTTATAGCGGATCTTCGTCACTTGAGTACCAGCAGATGATGGAGATGCT
CCACAAGGTGCCACTCACCTCGTTGCTACGTGACATACTGTTCAGAGCGA
ATGGCAATAAGCATCCCGTGACTAGTGCAGGAGGGCTTTTGGGAAACAAT
CAAAGAAATGAACGGCTTGACTACATATTCTTTAGCCCGGGTAACAGAAG
TGACACCCGTTCACCGTGTACCGGTACCCTGACGGACATAAAGAGTTCTG
TTCGCGTGGAGCAATTGAAGATATCTGGGAGACCCTATCGAACCTTAAGT
GACCATTATGCTGTGGTTGCCAACTTCAAAATTGAGTCAAAAGGCAATTG
TAGTCGCAATCGATGA
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Coding sequence (CDS) from alignment at tig00000005_pilon:1190107..1191372+

>Ggra2671.t1 ID=Ggra2671.t1|Name=Ggra2671.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1266bp|location=Sequence derived from alignment at tig00000005_pilon:1190107..1191372+ (Gracilaria gracilis GNS1m male)
ATGGATGTTATCGACAACGTTTCGGTTCCGTGGGGGCCACCTCATTTAGC
GACCGCTGTGACAGAGAGCTACTCCTCGATTCCCCTGCACACTAATAGTG
AGCAAACCAGAAGGTCTGACTTCCCAAAATCCCCGTTTTCTGTGTTCACA
AAGCCCAATCGTCCTCTTCCGCCTCCCTTCATTGTTTTGATCATTTTCTT
CGTGGCGATTGTGGTTTTCGAACGCTATGTAGAGAGGGCACCAATCGTTC
TTATGAGTAGCGAGGAGAATCTTCTTGAGAGCCACTCTATGAATAGACCT
AACACGGATGTTGTGCGTTTTATGACTTTTAACACGTTCATACGACCAGT
CGGTGTCGGTTATGGTGATCACAAGGACGAGCGCCTGCGTGACTTGTTGG
GACAGTTGGGCTCATTTGACATCGTTTGCTTTCAGGAGCTCTTTACTTCC
AGCGGATTTCGGAAAGTAAAGTTTCTCCAAGAGCTTGAGCTGGTCTATGG
TTTTGATAATTACGTAACATCCCCTTCGCCTGGTATAGAAGGGCTGTTCT
TCTTTCCTCCAAAGATTATTGATGGAGGGCTAGTCATCGCCTCTCGATTT
GATATTCTTGAAGCAGACTACCGAACATATTCTAGATCGAACATCCTATC
CATCGACTGTTTCGTCGCCAAAGGAGTGCTTTATGCTCGGCTCGCAGTAC
CTATGCGCAACACAAGTAAGTGCTTCATACACCTTTTCACCACACATATG
CAAGCGAACAATGGGTTGGGTATCGACTTTGTCACAACTCGTCAATCACA
ACTTCAGGAGTTGGTCGAGTTTGTTGTGAAGAAAACTAGCTCTGATCCGG
GTGCCCCCATCATTCTCGCAGGGGATTTCAATGTCGATGGTCGGCTTGAT
TTTTATAGCGGATCTTCGTCACTTGAGTACCAGCAGATGATGGAGATGCT
CCACAAGGTGCCACTCACCTCGTTGCTACGTGACATACTGTTCAGAGCGA
ATGGCAATAAGCATCCCGTGACTAGTGCAGGAGGGCTTTTGGGAAACAAT
CAAAGAAATGAACGGCTTGACTACATATTCTTTAGCCCGGGTAACAGAAG
TGACACCCGTTCACCGTGTACCGGTACCCTGACGGACATAAAGAGTTCTG
TTCGCGTGGAGCAATTGAAGATATCTGGGAGACCCTATCGAACCTTAAGT
GACCATTATGCTGTGGTTGCCAACTTCAAAATTGAGTCAAAAGGCAATTG
TAGTCGCAATCGATGA
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