Ggra2662.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra2662.t1
Unique NameGgra2662.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length271
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000005_piloncontigtig00000005_pilon:1163676..1164488 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog2880.D7FQ20
Preferred nameCHLM
PFAMsMg-por_mtran_C
Max annot lvl2759|Eukaryota
KEGG rclassRC00003,RC00460
KEGG koko:K03428
KEGG ReactionR04237
KEGG Pathwayko00860,ko01100,ko01110,map00860,map01100,map01110
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006725,GO:0006778,GO:0006779,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0008171,GO:0008757,GO:0009058,GO:0009507,GO:0009526,GO:0009534,GO:0009536,GO:0009579,GO:0009941,GO:0009987,GO:0015994,GO:0015995,GO:0016740,GO:0016741,GO:0018130,GO:0019438,GO:0031967,GO:0031975,GO:0031976,GO:0031984,GO:0032259,GO:0033013,GO:0033014,GO:0034641,GO:0042440,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044249,GO:0044271,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0046148,GO:0046406,GO:0046483,GO:0051186,GO:0051188,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576
Evalue1.76e-95
EggNOG OGsCOG2227@1|root,KOG1270@2759|Eukaryota
EC2.1.1.11
Descriptionhexaprenyldihydroxybenzoate methyltransferase activity
COG categoryH
BRITEko00000,ko00001,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra2662Ggra2662Gracilaria gracilis GNS1m malegenetig00000005_pilon 1163676..1164488 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2662.t1.stop1Ggra2662.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000005_pilon 1163676..1163678 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2662.t1.CDS1Ggra2662.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000005_pilon 1163676..1164488 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2662.t1.exon1Ggra2662.t1.exon1Gracilaria gracilis GNS1m maleexontig00000005_pilon 1163676..1164488 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2662.t1.start1Ggra2662.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000005_pilon 1164486..1164488 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2662.t1Ggra2662.t1Gracilaria gracilis GNS1m malepolypeptidetig00000005_pilon 1163676..1164488 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra2662.t1 ID=Ggra2662.t1|Name=Ggra2662.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=271bp
MCAFVGVPALTSRFGGVGVPNPCRVCSRPSGARAQRVVRMVSGVDDKKVV
TEYFNNTGFDRWNRIYSEDGEVNSVQLDIREGHAQTVDKVLKWVDEDSDA
QGMRFCDAGCGVGSLTLPLLQRGAVVAASDISDAMVSEAERRGRQLLPEK
MANVTFSTLDLESINGTYDTVCCIDVMIHYPTEQAVDMIAKLVERSERRV
IISFAPNTFLLAILKKIGELFPGPSKATRAYLHDEADIRRALERCGFSIR
RSEFTGTRFYFSRLLEAVKE*
back to top

spliced messenger RNA

>Ggra2662.t1 ID=Ggra2662.t1|Name=Ggra2662.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=813bp|location=Sequence derived from alignment at tig00000005_pilon:1163676..1164488- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTGTGCCTTTGTTGGCGTGCCCGCGCTTACCTCGCGCTTTGGTGGCGT
GGGCGTGCCCAATCCATGTCGCGTGTGTTCGAGGCCGAGTGGCGCGCGCG
CGCAGCGCGTCGTGCGAATGGTCTCGGGCGTTGATGATAAGAAGGTTGTC
ACCGAGTACTTCAATAATACCGGCTTTGATCGTTGGAATCGCATTTATTC
CGAGGATGGGGAGGTTAACAGCGTGCAGCTTGACATTCGTGAGGGACACG
CGCAGACCGTTGACAAGGTGCTCAAGTGGGTCGATGAAGATAGCGACGCG
CAAGGAATGCGCTTTTGTGACGCCGGCTGTGGTGTAGGCTCGCTTACATT
ACCGCTCTTGCAACGAGGCGCTGTTGTAGCAGCTTCTGACATCAGCGATG
CTATGGTCTCAGAGGCTGAGAGACGTGGGCGTCAACTGCTGCCCGAAAAA
ATGGCGAACGTTACCTTTTCCACCTTGGATCTTGAGTCTATTAACGGAAC
TTATGATACTGTGTGTTGCATTGATGTCATGATTCATTACCCCACGGAAC
AGGCGGTTGACATGATTGCCAAATTGGTGGAGAGAAGCGAGCGCAGAGTG
ATCATAAGTTTCGCGCCCAACACGTTCCTATTGGCCATTTTGAAGAAGAT
TGGAGAGTTGTTCCCGGGCCCAAGTAAGGCCACCAGGGCGTATCTGCATG
ACGAGGCGGATATTCGACGTGCGTTGGAAAGGTGTGGATTCAGCATTCGC
AGGAGCGAGTTCACTGGCACCCGCTTCTATTTCTCGCGACTACTGGAAGC
GGTGAAGGAGTAG
back to top

protein sequence of Ggra2662.t1

>Ggra2662.t1 ID=Ggra2662.t1|Name=Ggra2662.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=271bp
MCAFVGVPALTSRFGGVGVPNPCRVCSRPSGARAQRVVRMVSGVDDKKVV
TEYFNNTGFDRWNRIYSEDGEVNSVQLDIREGHAQTVDKVLKWVDEDSDA
QGMRFCDAGCGVGSLTLPLLQRGAVVAASDISDAMVSEAERRGRQLLPEK
MANVTFSTLDLESINGTYDTVCCIDVMIHYPTEQAVDMIAKLVERSERRV
IISFAPNTFLLAILKKIGELFPGPSKATRAYLHDEADIRRALERCGFSIR
RSEFTGTRFYFSRLLEAVKE*
back to top

mRNA from alignment at tig00000005_pilon:1163676..1164488-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra2662.t1 ID=Ggra2662.t1|Name=Ggra2662.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=813bp|location=Sequence derived from alignment at tig00000005_pilon:1163676..1164488- (Gracilaria gracilis GNS1m male)
ATGTGTGCCTTTGTTGGCGTGCCCGCGCTTACCTCGCGCTTTGGTGGCGT
GGGCGTGCCCAATCCATGTCGCGTGTGTTCGAGGCCGAGTGGCGCGCGCG
CGCAGCGCGTCGTGCGAATGGTCTCGGGCGTTGATGATAAGAAGGTTGTC
ACCGAGTACTTCAATAATACCGGCTTTGATCGTTGGAATCGCATTTATTC
CGAGGATGGGGAGGTTAACAGCGTGCAGCTTGACATTCGTGAGGGACACG
CGCAGACCGTTGACAAGGTGCTCAAGTGGGTCGATGAAGATAGCGACGCG
CAAGGAATGCGCTTTTGTGACGCCGGCTGTGGTGTAGGCTCGCTTACATT
ACCGCTCTTGCAACGAGGCGCTGTTGTAGCAGCTTCTGACATCAGCGATG
CTATGGTCTCAGAGGCTGAGAGACGTGGGCGTCAACTGCTGCCCGAAAAA
ATGGCGAACGTTACCTTTTCCACCTTGGATCTTGAGTCTATTAACGGAAC
TTATGATACTGTGTGTTGCATTGATGTCATGATTCATTACCCCACGGAAC
AGGCGGTTGACATGATTGCCAAATTGGTGGAGAGAAGCGAGCGCAGAGTG
ATCATAAGTTTCGCGCCCAACACGTTCCTATTGGCCATTTTGAAGAAGAT
TGGAGAGTTGTTCCCGGGCCCAAGTAAGGCCACCAGGGCGTATCTGCATG
ACGAGGCGGATATTCGACGTGCGTTGGAAAGGTGTGGATTCAGCATTCGC
AGGAGCGAGTTCACTGGCACCCGCTTCTATTTCTCGCGACTACTGGAAGC
GGTGAAGGAGTAG
back to top

Coding sequence (CDS) from alignment at tig00000005_pilon:1163676..1164488-

>Ggra2662.t1 ID=Ggra2662.t1|Name=Ggra2662.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=813bp|location=Sequence derived from alignment at tig00000005_pilon:1163676..1164488- (Gracilaria gracilis GNS1m male)
ATGTGTGCCTTTGTTGGCGTGCCCGCGCTTACCTCGCGCTTTGGTGGCGT
GGGCGTGCCCAATCCATGTCGCGTGTGTTCGAGGCCGAGTGGCGCGCGCG
CGCAGCGCGTCGTGCGAATGGTCTCGGGCGTTGATGATAAGAAGGTTGTC
ACCGAGTACTTCAATAATACCGGCTTTGATCGTTGGAATCGCATTTATTC
CGAGGATGGGGAGGTTAACAGCGTGCAGCTTGACATTCGTGAGGGACACG
CGCAGACCGTTGACAAGGTGCTCAAGTGGGTCGATGAAGATAGCGACGCG
CAAGGAATGCGCTTTTGTGACGCCGGCTGTGGTGTAGGCTCGCTTACATT
ACCGCTCTTGCAACGAGGCGCTGTTGTAGCAGCTTCTGACATCAGCGATG
CTATGGTCTCAGAGGCTGAGAGACGTGGGCGTCAACTGCTGCCCGAAAAA
ATGGCGAACGTTACCTTTTCCACCTTGGATCTTGAGTCTATTAACGGAAC
TTATGATACTGTGTGTTGCATTGATGTCATGATTCATTACCCCACGGAAC
AGGCGGTTGACATGATTGCCAAATTGGTGGAGAGAAGCGAGCGCAGAGTG
ATCATAAGTTTCGCGCCCAACACGTTCCTATTGGCCATTTTGAAGAAGAT
TGGAGAGTTGTTCCCGGGCCCAAGTAAGGCCACCAGGGCGTATCTGCATG
ACGAGGCGGATATTCGACGTGCGTTGGAAAGGTGTGGATTCAGCATTCGC
AGGAGCGAGTTCACTGGCACCCGCTTCTATTTCTCGCGACTACTGGAAGC
GGTGAAGGAGTAG
back to top