Ggra2651.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra2651.t1
Unique NameGgra2651.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length402
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000005_piloncontigtig00000005_pilon:1039237..1040442 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005702253.1
Preferred namePPIL4
PFAMsPro_isomerase,RRM_1,zf-CCHC
Max annot lvl2759|Eukaryota
KEGG koko:K03061,ko:K05012,ko:K09517,ko:K12735,ko:K12737
KEGG TC2.A.49.1.1,2.A.49.1.2,2.A.49.1.3,2.A.49.2.2,2.A.49.2.3,2.A.49.2.8
KEGG Pathwayko03050,ko04141,ko05169,map03050,map04141,map05169
KEGG ModuleM00341
GOsGO:0000228,GO:0000375,GO:0000377,GO:0000398,GO:0000413,GO:0000414,GO:0000416,GO:0000502,GO:0000785,GO:0000790,GO:0000993,GO:0001098,GO:0001099,GO:0001932,GO:0001934,GO:0002119,GO:0002164,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003755,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005694,GO:0005737,GO:0005829,GO:0005838,GO:0006139,GO:0006351,GO:0006355,GO:0006357,GO:0006396,GO:0006397,GO:0006464,GO:0006508,GO:0006511,GO:0006725,GO:0006807,GO:0006950,GO:0007275,GO:0008134,GO:0008150,GO:0008152,GO:0008380,GO:0008540,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009791,GO:0009889,GO:0009891,GO:0009893,GO:0009894,GO:0009896,GO:0009987,GO:0010033,GO:0010243,GO:0010467,GO:0010468,GO:0010470,GO:0010498,GO:0010556,GO:0010557,GO:0010562,GO:0010604,GO:0010628,GO:0010638,GO:0010720,GO:0016070,GO:0016071,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016853,GO:0016859,GO:0016887,GO:0017025,GO:0017111,GO:0018130,GO:0018193,GO:0018208,GO:0019219,GO:0019220,GO:0019222,GO:0019438,GO:0019538,GO:0019899,GO:0019941,GO:0022603,GO:0022624,GO:0030162,GO:0030163,GO:0030433,GO:0031056,GO:0031058,GO:0031060,GO:0031062,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031329,GO:0031331,GO:0031334,GO:0031399,GO:0031401,GO:0031595,GO:0031597,GO:0031974,GO:0031981,GO:0032268,GO:0032270,GO:0032501,GO:0032502,GO:0032774,GO:0032784,GO:0032786,GO:0032991,GO:0033043,GO:0033044,GO:0033120,GO:0033554,GO:0034641,GO:0034645,GO:0034654,GO:0034976,GO:0035327,GO:0036211,GO:0036402,GO:0036503,GO:0040008,GO:0040019,GO:0040026,GO:0040028,GO:0042176,GO:0042221,GO:0042325,GO:0042327,GO:0042623,GO:0043161,GO:0043170,GO:0043175,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043254,GO:0043412,GO:0043484,GO:0043632,GO:0043900,GO:0043902,GO:0044087,GO:0044089,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044445,GO:0044446,GO:0044454,GO:0044464,GO:0044877,GO:0045595,GO:0045597,GO:0045732,GO:0045862,GO:0045893,GO:0045898,GO:0045899,GO:0045927,GO:0045935,GO:0045937,GO:0045944,GO:0045995,GO:0046483,GO:0048518,GO:0048522,GO:0048580,GO:0048582,GO:0048638,GO:0048639,GO:0048856,GO:0050684,GO:0050685,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051094,GO:0051128,GO:0051130,GO:0051171,GO:0051173,GO:0051174,GO:0051239,GO:0051240,GO:0051246,GO:0051247,GO:0051252,GO:0051254,GO:0051569,GO:0051571,GO:0051603,GO:0051716,GO:0060255,GO:0060260,GO:0060261,GO:0060281,GO:0060282,GO:0060284,GO:0061062,GO:0061063,GO:0061136,GO:0065007,GO:0070013,GO:0070063,GO:0071012,GO:0071013,GO:0071704,GO:0080090,GO:0090304,GO:0097159,GO:0097659,GO:0140096,GO:1901360,GO:1901362,GO:1901363,GO:1901407,GO:1901409,GO:1901564,GO:1901565,GO:1901575,GO:1901576,GO:1901698,GO:1901800,GO:1902275,GO:1902494,GO:1902680,GO:1903050,GO:1903052,GO:1903311,GO:1903313,GO:1903362,GO:1903364,GO:1903506,GO:1903508,GO:1905269,GO:1905368,GO:1905369,GO:1905435,GO:1905437,GO:1905471,GO:1905473,GO:1905879,GO:1905881,GO:1990904,GO:2000026,GO:2000112,GO:2000142,GO:2000144,GO:2000241,GO:2000243,GO:2000543,GO:2001141,GO:2001160,GO:2001162,GO:2001163,GO:2001165,GO:2001252,GO:2001253,GO:2001255
Evalue4.16e-117
EggNOG OGsCOG0652@1|root,KOG0415@2759|Eukaryota
EC5.2.1.8
Descriptionpeptidyl-prolyl cis-trans isomerase activity
COG categoryO
BRITEko00000,ko00001,ko00002,ko01000,ko03041,ko03051,ko03110,ko04040
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra2651Ggra2651Gracilaria gracilis GNS1m malegenetig00000005_pilon 1039237..1040442 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2651.t1.start1Ggra2651.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000005_pilon 1039237..1039239 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2651.t1.CDS1Ggra2651.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000005_pilon 1039237..1040442 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2651.t1.exon1Ggra2651.t1.exon1Gracilaria gracilis GNS1m maleexontig00000005_pilon 1039237..1040442 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2651.t1.stop1Ggra2651.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000005_pilon 1040440..1040442 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2651.t1Ggra2651.t1Gracilaria gracilis GNS1m malepolypeptidetig00000005_pilon 1039237..1040442 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra2651.t1 ID=Ggra2651.t1|Name=Ggra2651.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=402bp
MSVLVETSLGDIVIDLFDAIAPKSCLNFLKLCKIKYYNDCEFFRVQKGFV
AQTGDPNNDGTGGVSVYSQCQPPGVTGLKPEISLKVSHRRKGTVSMTTSA
APSDQSKVHGSQFFITLADELAYLDETHTIIGRVEEGFDVLDKLAEIDVD
ENFRPYRVLRIRHTIILHDPFEDPAGLPQDCPSPEPTQTVPEDRLASDEE
IDEDADDEERVKRLRELQAEREARSRAEVLEMIGDIGDADMKPPDNVLFI
CKLNPVTQSEDLEIIFSRFGNCAADILRDKETGDSLCYGFIEFENKQQCE
RAFFKMENAVIDDRRVLVDFSQSVSKLWNARRRSQQNKKAKEFVAPTPAP
PKAPKHVQPRRGSPSKETDGVNEFVSANKDKSTWEIRKKRRKGRSRFENA
D*
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spliced messenger RNA

>Ggra2651.t1 ID=Ggra2651.t1|Name=Ggra2651.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1206bp|location=Sequence derived from alignment at tig00000005_pilon:1039237..1040442+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGCGTCCTCGTCGAGACTTCTCTTGGTGACATCGTCATAGATCTCTT
CGACGCAATTGCTCCAAAGTCATGCTTGAATTTCTTGAAGTTGTGCAAGA
TCAAGTACTATAACGACTGCGAGTTCTTTCGTGTGCAAAAGGGTTTTGTC
GCACAAACTGGAGACCCAAATAATGATGGGACTGGCGGAGTCAGCGTATA
TTCCCAATGTCAACCGCCCGGGGTCACTGGCCTTAAGCCAGAAATCTCTC
TCAAAGTGAGCCATCGAAGAAAGGGAACAGTGTCAATGACTACGTCTGCT
GCACCATCTGACCAATCAAAAGTTCACGGCAGCCAGTTTTTCATAACCCT
TGCAGACGAGCTTGCGTATTTGGATGAAACTCACACTATTATTGGCCGAG
TGGAGGAAGGGTTCGACGTTCTTGATAAACTTGCCGAGATCGACGTCGAT
GAAAATTTCAGACCCTATCGCGTCCTTCGCATCAGGCATACAATCATTCT
ACATGACCCTTTCGAGGACCCCGCCGGTTTACCACAAGATTGTCCCTCAC
CGGAGCCAACCCAGACCGTGCCTGAAGACCGTTTGGCATCtgatgaagag
attgatgaggatgccgatgatgaagaAAGAGTGAAGCGTCTGCGAGAGCT
GCAAGCCGAAAGAGAAGCTCGTTCACGCGCGGAAGTGCTCGAAATGATCG
GGGACATTGGAGATGCAGATATGAAGCCGCCAGATAACGTTCTTTTCATA
TGCAAGCTTAATCCTGTGACGCAATCAGAAGATCTAGAGATCATATTCTC
TCGGTTTGGAAACTGCGCGGCTGACATTTTACGTGATAAGGAAACAGGTG
ATTCTCTATGTTACGGGTTTATAGAGTTCGAAAACAAACAGCAATGTGAG
CGAGCGTTTTTCAAAATGGAAAATGCCGTAATAGACGACAGAAGAGTCCT
GGTTGACTTCTCACAGTCAGTAAGCAAACTGTGGAATGCGAGGCGCAGAT
CACAGCAGAACAAAAAAGCAAAGGAGTTTGTAGCTCCTACTCCAGCGCCA
CCTAAAGCCCCGAAACATGTGCAACCACGGAGAGGGAGTCCATCGAAAGA
AACTGACGGAGTGAATGAATTCGTAAGTGCAAACAAGGATAAATCAACGT
GGGAAATTAGGAAGAAGCGGCGGAAAGGTCGATCGCGATTTGAGAACGCC
GACTAG
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protein sequence of Ggra2651.t1

>Ggra2651.t1 ID=Ggra2651.t1|Name=Ggra2651.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=402bp
MSVLVETSLGDIVIDLFDAIAPKSCLNFLKLCKIKYYNDCEFFRVQKGFV
AQTGDPNNDGTGGVSVYSQCQPPGVTGLKPEISLKVSHRRKGTVSMTTSA
APSDQSKVHGSQFFITLADELAYLDETHTIIGRVEEGFDVLDKLAEIDVD
ENFRPYRVLRIRHTIILHDPFEDPAGLPQDCPSPEPTQTVPEDRLASDEE
IDEDADDEERVKRLRELQAEREARSRAEVLEMIGDIGDADMKPPDNVLFI
CKLNPVTQSEDLEIIFSRFGNCAADILRDKETGDSLCYGFIEFENKQQCE
RAFFKMENAVIDDRRVLVDFSQSVSKLWNARRRSQQNKKAKEFVAPTPAP
PKAPKHVQPRRGSPSKETDGVNEFVSANKDKSTWEIRKKRRKGRSRFENA
D*
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mRNA from alignment at tig00000005_pilon:1039237..1040442+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra2651.t1 ID=Ggra2651.t1|Name=Ggra2651.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1206bp|location=Sequence derived from alignment at tig00000005_pilon:1039237..1040442+ (Gracilaria gracilis GNS1m male)
ATGAGCGTCCTCGTCGAGACTTCTCTTGGTGACATCGTCATAGATCTCTT
CGACGCAATTGCTCCAAAGTCATGCTTGAATTTCTTGAAGTTGTGCAAGA
TCAAGTACTATAACGACTGCGAGTTCTTTCGTGTGCAAAAGGGTTTTGTC
GCACAAACTGGAGACCCAAATAATGATGGGACTGGCGGAGTCAGCGTATA
TTCCCAATGTCAACCGCCCGGGGTCACTGGCCTTAAGCCAGAAATCTCTC
TCAAAGTGAGCCATCGAAGAAAGGGAACAGTGTCAATGACTACGTCTGCT
GCACCATCTGACCAATCAAAAGTTCACGGCAGCCAGTTTTTCATAACCCT
TGCAGACGAGCTTGCGTATTTGGATGAAACTCACACTATTATTGGCCGAG
TGGAGGAAGGGTTCGACGTTCTTGATAAACTTGCCGAGATCGACGTCGAT
GAAAATTTCAGACCCTATCGCGTCCTTCGCATCAGGCATACAATCATTCT
ACATGACCCTTTCGAGGACCCCGCCGGTTTACCACAAGATTGTCCCTCAC
CGGAGCCAACCCAGACCGTGCCTGAAGACCGTTTGGCATCtgatgaagag
attgatgaggatgccgatgatgaagaAAGAGTGAAGCGTCTGCGAGAGCT
GCAAGCCGAAAGAGAAGCTCGTTCACGCGCGGAAGTGCTCGAAATGATCG
GGGACATTGGAGATGCAGATATGAAGCCGCCAGATAACGTTCTTTTCATA
TGCAAGCTTAATCCTGTGACGCAATCAGAAGATCTAGAGATCATATTCTC
TCGGTTTGGAAACTGCGCGGCTGACATTTTACGTGATAAGGAAACAGGTG
ATTCTCTATGTTACGGGTTTATAGAGTTCGAAAACAAACAGCAATGTGAG
CGAGCGTTTTTCAAAATGGAAAATGCCGTAATAGACGACAGAAGAGTCCT
GGTTGACTTCTCACAGTCAGTAAGCAAACTGTGGAATGCGAGGCGCAGAT
CACAGCAGAACAAAAAAGCAAAGGAGTTTGTAGCTCCTACTCCAGCGCCA
CCTAAAGCCCCGAAACATGTGCAACCACGGAGAGGGAGTCCATCGAAAGA
AACTGACGGAGTGAATGAATTCGTAAGTGCAAACAAGGATAAATCAACGT
GGGAAATTAGGAAGAAGCGGCGGAAAGGTCGATCGCGATTTGAGAACGCC
GACTAG
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Coding sequence (CDS) from alignment at tig00000005_pilon:1039237..1040442+

>Ggra2651.t1 ID=Ggra2651.t1|Name=Ggra2651.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1206bp|location=Sequence derived from alignment at tig00000005_pilon:1039237..1040442+ (Gracilaria gracilis GNS1m male)
ATGAGCGTCCTCGTCGAGACTTCTCTTGGTGACATCGTCATAGATCTCTT
CGACGCAATTGCTCCAAAGTCATGCTTGAATTTCTTGAAGTTGTGCAAGA
TCAAGTACTATAACGACTGCGAGTTCTTTCGTGTGCAAAAGGGTTTTGTC
GCACAAACTGGAGACCCAAATAATGATGGGACTGGCGGAGTCAGCGTATA
TTCCCAATGTCAACCGCCCGGGGTCACTGGCCTTAAGCCAGAAATCTCTC
TCAAAGTGAGCCATCGAAGAAAGGGAACAGTGTCAATGACTACGTCTGCT
GCACCATCTGACCAATCAAAAGTTCACGGCAGCCAGTTTTTCATAACCCT
TGCAGACGAGCTTGCGTATTTGGATGAAACTCACACTATTATTGGCCGAG
TGGAGGAAGGGTTCGACGTTCTTGATAAACTTGCCGAGATCGACGTCGAT
GAAAATTTCAGACCCTATCGCGTCCTTCGCATCAGGCATACAATCATTCT
ACATGACCCTTTCGAGGACCCCGCCGGTTTACCACAAGATTGTCCCTCAC
CGGAGCCAACCCAGACCGTGCCTGAAGACCGTTTGGCATCtgatgaagag
attgatgaggatgccgatgatgaagaAAGAGTGAAGCGTCTGCGAGAGCT
GCAAGCCGAAAGAGAAGCTCGTTCACGCGCGGAAGTGCTCGAAATGATCG
GGGACATTGGAGATGCAGATATGAAGCCGCCAGATAACGTTCTTTTCATA
TGCAAGCTTAATCCTGTGACGCAATCAGAAGATCTAGAGATCATATTCTC
TCGGTTTGGAAACTGCGCGGCTGACATTTTACGTGATAAGGAAACAGGTG
ATTCTCTATGTTACGGGTTTATAGAGTTCGAAAACAAACAGCAATGTGAG
CGAGCGTTTTTCAAAATGGAAAATGCCGTAATAGACGACAGAAGAGTCCT
GGTTGACTTCTCACAGTCAGTAAGCAAACTGTGGAATGCGAGGCGCAGAT
CACAGCAGAACAAAAAAGCAAAGGAGTTTGTAGCTCCTACTCCAGCGCCA
CCTAAAGCCCCGAAACATGTGCAACCACGGAGAGGGAGTCCATCGAAAGA
AACTGACGGAGTGAATGAATTCGTAAGTGCAAACAAGGATAAATCAACGT
GGGAAATTAGGAAGAAGCGGCGGAAAGGTCGATCGCGATTTGAGAACGCC
GACTAG
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