Ggra2650.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra2650.t1
Unique NameGgra2650.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length221
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000005_piloncontigtig00000005_pilon:1037731..1038772 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog40384.G7XX32
PFAMsAAA_22,Ank_2,Ank_4,NACHT
Max annot lvl4751|Fungi
Evalue8.71e-07
EggNOG OGsCOG0666@1|root,KOG4177@2759|Eukaryota,38BVK@33154|Opisthokonta,3NZ8C@4751|Fungi,3QR7F@4890|Ascomycota,20C1R@147545|Eurotiomycetes,3SBFJ@5042|Eurotiales
DescriptionAnkyrin repeat
COG categoryM
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra2650Ggra2650Gracilaria gracilis GNS1m malegenetig00000005_pilon 1037731..1038772 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2650.t1Ggra2650.t1Gracilaria gracilis GNS1m malepolypeptidetig00000005_pilon 1037731..1038772 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2650.t1.stop1Ggra2650.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000005_pilon 1037731..1037733 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2650.t1.CDS1Ggra2650.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000005_pilon 1037731..1037879 -
Ggra2650.t1.CDS2Ggra2650.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000005_pilon 1037980..1038320 -
Ggra2650.t1.CDS3Ggra2650.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000005_pilon 1038398..1038512 -
Ggra2650.t1.CDS4Ggra2650.t1.CDS4Gracilaria gracilis GNS1m maleCDStig00000005_pilon 1038715..1038772 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2650.t1.exon1Ggra2650.t1.exon1Gracilaria gracilis GNS1m maleexontig00000005_pilon 1037731..1037879 -
Ggra2650.t1.exon2Ggra2650.t1.exon2Gracilaria gracilis GNS1m maleexontig00000005_pilon 1037980..1038320 -
Ggra2650.t1.exon3Ggra2650.t1.exon3Gracilaria gracilis GNS1m maleexontig00000005_pilon 1038398..1038512 -
Ggra2650.t1.exon4Ggra2650.t1.exon4Gracilaria gracilis GNS1m maleexontig00000005_pilon 1038715..1038772 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2650.t1.intron1Ggra2650.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000005_pilon 1037880..1037979 -
Ggra2650.t1.intron2Ggra2650.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000005_pilon 1038321..1038397 -
Ggra2650.t1.intron3Ggra2650.t1.intron3Gracilaria gracilis GNS1m maleintrontig00000005_pilon 1038513..1038714 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2650.t1.start1Ggra2650.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000005_pilon 1038770..1038772 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra2650.t1 ID=Ggra2650.t1|Name=Ggra2650.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=221bp
MHQWCTLHHAAPQSGDELSFLHCISSLRHTWSCIYNLESPKDRSAKSLER
RTVLCHCGSSPRTPQPRASLKISREALLDYNSDKTSGSPRDQSRVRVLLN
HVGSKVEDAWLLVAARVGDGEMVQELLNNGADPNVADCEGSTPLMRAVSR
GHVHATRVLLDDKRVDVSKQNDWGYDAVIYLGNVQNSQPEAFKQISELME
GRGIQSSRSKLRWTQKPKRR*
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spliced messenger RNA

>Ggra2650.t1 ID=Ggra2650.t1|Name=Ggra2650.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=663bp|location=Sequence derived from alignment at tig00000005_pilon:1037731..1038772- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCACCAGTGGTGTACGCTGCACCATGCCGCACCACAATCTGGTGACGA
GCTGTCCTTCTTGCATTGCATCTCAAGCCTGCGCCACACCTGGAGTTGTA
TCTACAACCTAGAATCTCCAAAGGACAGAAGTGCCAAATCTCTGGAAAGG
CGAACCGTACTATGTCATTGCGGGTCGAGTCCAAGAACACCGCAACCACG
AGCCTCTCTAAAAATAAGTCGGGAGGCTCTCTTAGACTATAACTCTGACA
AAACGAGCGGCTCACCTCGCGATCAATCGAGGGTTCGCGTCCTACTAAAC
CATGTTGGGTCCAAGGTAGAGGACGCATGGCTTCTTGTGGCAGCACGTGT
GGGCGATGGCGAAATGGTACAAGAGCTATTGAACAACGGAGCCGACCCCA
ACGTCGCTGACTGTGAAGGGTCAACGCCCTTAATGCGCGCAGTTTCACGA
GGCCATGTGCACGCAACGCGGGTTCTGCTTGACGACAAGCGTGTCGACGT
TAGCAAACAGAATGATTGGGGGTACGATGCCGTCATCTACCTTGGTAATG
TGCAAAATAGCCAACCCGAGGCCTTCAAACAAATCAGCGAGCTTATGGAA
GGCCGCGGTATACAATCGTCCCGGAGTAAGTTGAGATGGACACAAAAACC
GAAGAGACGTTAA
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protein sequence of Ggra2650.t1

>Ggra2650.t1 ID=Ggra2650.t1|Name=Ggra2650.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=221bp
MHQWCTLHHAAPQSGDELSFLHCISSLRHTWSCIYNLESPKDRSAKSLER
RTVLCHCGSSPRTPQPRASLKISREALLDYNSDKTSGSPRDQSRVRVLLN
HVGSKVEDAWLLVAARVGDGEMVQELLNNGADPNVADCEGSTPLMRAVSR
GHVHATRVLLDDKRVDVSKQNDWGYDAVIYLGNVQNSQPEAFKQISELME
GRGIQSSRSKLRWTQKPKRR*
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mRNA from alignment at tig00000005_pilon:1037731..1038772-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra2650.t1 ID=Ggra2650.t1|Name=Ggra2650.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1042bp|location=Sequence derived from alignment at tig00000005_pilon:1037731..1038772- (Gracilaria gracilis GNS1m male)
ATGCACCAGTGGTGTACGCTGCACCATGCCGCACCACAATCTGGTGACGA
GCTGTCCTGTCTGTAGAGCTAAAAAAAGATAGGCCGTTGAAGTCAGTGTC
ACCAAGGCTCGTTGAATCCAGGCGAAGGTTTGAGCAGCAATTCTCTTCGA
CTCGAATTCTTTCCAGATCGAACCGCACCATCGATTGAGCGCAGCAGTCT
CAACGTGCAACGGTGCAAAATTTCCTAGTCGAGGCATCTCAGCTACCCCT
TGGGAAATAGTCTTGCATTGCATCTCAAGCCTGCGCCACACCTGGAGTTG
TATCTACAACCTAGAATCTCCAAAGGACAGAAGTGCCAAATCTCTGGAAA
GGCGAACCGTACTATGTCATTGCGGGTCAGTTTCGCACCAGCTTTCGCAT
CTCCATCGTCCATTAGATTTCATTCGACATTCCCAATACTGAAGTGTAAC
AGGTCGAGTCCAAGAACACCGCAACCACGAGCCTCTCTAAAAATAAGTCG
GGAGGCTCTCTTAGACTATAACTCTGACAAAACGAGCGGCTCACCTCGCG
ATCAATCGAGGGTTCGCGTCCTACTAAACCATGTTGGGTCCAAGGTAGAG
GACGCATGGCTTCTTGTGGCAGCACGTGTGGGCGATGGCGAAATGGTACA
AGAGCTATTGAACAACGGAGCCGACCCCAACGTCGCTGACTGTGAAGGGT
CAACGCCCTTAATGCGCGCAGTTTCACGAGGCCATGTGCACGCAACGCGG
GTTCTGCTTGACGACAAGCGTGTCGACGTTAGCAAACAGAATGGTAAGCG
AGCTCGCCGTGGAGACGTTTACAAAAGTTATTAGTTACTGACGTTTTTGT
TTCGTGATTGCTGTGTGTATATCGCACGCATGGGATGATACAGATTGGGG
GTACGATGCCGTCATCTACCTTGGTAATGTGCAAAATAGCCAACCCGAGG
CCTTCAAACAAATCAGCGAGCTTATGGAAGGCCGCGGTATACAATCGTCC
CGGAGTAAGTTGAGATGGACACAAAAACCGAAGAGACGTTAA
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Coding sequence (CDS) from alignment at tig00000005_pilon:1037731..1038772-

>Ggra2650.t1 ID=Ggra2650.t1|Name=Ggra2650.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=663bp|location=Sequence derived from alignment at tig00000005_pilon:1037731..1038772- (Gracilaria gracilis GNS1m male)
ATGCACCAGTGGTGTACGCTGCACCATGCCGCACCACAATCTGGTGACGA
GCTGTCCTTCTTGCATTGCATCTCAAGCCTGCGCCACACCTGGAGTTGTA
TCTACAACCTAGAATCTCCAAAGGACAGAAGTGCCAAATCTCTGGAAAGG
CGAACCGTACTATGTCATTGCGGGTCGAGTCCAAGAACACCGCAACCACG
AGCCTCTCTAAAAATAAGTCGGGAGGCTCTCTTAGACTATAACTCTGACA
AAACGAGCGGCTCACCTCGCGATCAATCGAGGGTTCGCGTCCTACTAAAC
CATGTTGGGTCCAAGGTAGAGGACGCATGGCTTCTTGTGGCAGCACGTGT
GGGCGATGGCGAAATGGTACAAGAGCTATTGAACAACGGAGCCGACCCCA
ACGTCGCTGACTGTGAAGGGTCAACGCCCTTAATGCGCGCAGTTTCACGA
GGCCATGTGCACGCAACGCGGGTTCTGCTTGACGACAAGCGTGTCGACGT
TAGCAAACAGAATGATTGGGGGTACGATGCCGTCATCTACCTTGGTAATG
TGCAAAATAGCCAACCCGAGGCCTTCAAACAAATCAGCGAGCTTATGGAA
GGCCGCGGTATACAATCGTCCCGGAGTAAGTTGAGATGGACACAAAAACC
GAAGAGACGTTAA
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