Ggra2640.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra2640.t1
Unique NameGgra2640.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length86
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000005_piloncontigtig00000005_pilon:1012642..1012899 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog70448.A0A090M6F0
Max annot lvl33090|Viridiplantae
Evalue3.05e-06
EggNOG OGs2CRS0@1|root,2R8VW@2759|Eukaryota,382V0@33090|Viridiplantae
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra2640Ggra2640Gracilaria gracilis GNS1m malegenetig00000005_pilon 1012642..1012899 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2640.t1.start1Ggra2640.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000005_pilon 1012642..1012644 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2640.t1.CDS1Ggra2640.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000005_pilon 1012642..1012899 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2640.t1.exon1Ggra2640.t1.exon1Gracilaria gracilis GNS1m maleexontig00000005_pilon 1012642..1012899 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2640.t1.stop1Ggra2640.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000005_pilon 1012897..1012899 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2640.t1Ggra2640.t1Gracilaria gracilis GNS1m malepolypeptidetig00000005_pilon 1012642..1012899 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra2640.t1 ID=Ggra2640.t1|Name=Ggra2640.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=86bp
MSSSNPSANATSPSPSRPQSSGVNAEGNRFNTPGGTNSNVSTSYHYSNKD
GSYYYRNDNGSSYYCAPSGKGYYKRTSESKWQRKS*
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spliced messenger RNA

>Ggra2640.t1 ID=Ggra2640.t1|Name=Ggra2640.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=258bp|location=Sequence derived from alignment at tig00000005_pilon:1012642..1012899+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCGTCTAGCAACCCCAGTGCCAACGCCACATCCCCATCTCCTTCACG
CCCGCAGTCTTCCGGGGTGAATGCCGAGGGCAACCGTTTCAACACACCTG
GAGGCACCAACTCTAATGTGAGCACTTCATATCACTACAGTAACAAGGAT
GGCAGCTATTACTACCGCAACGATAACGGGTCTTCGTATTACTGCGCCCC
TTCTGGTAAGGGGTATTACAAACGTACGAGCGAATCCAAATGGCAGCGCA
AGTCTTAG
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protein sequence of Ggra2640.t1

>Ggra2640.t1 ID=Ggra2640.t1|Name=Ggra2640.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=86bp
MSSSNPSANATSPSPSRPQSSGVNAEGNRFNTPGGTNSNVSTSYHYSNKD
GSYYYRNDNGSSYYCAPSGKGYYKRTSESKWQRKS*
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mRNA from alignment at tig00000005_pilon:1012642..1012899+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra2640.t1 ID=Ggra2640.t1|Name=Ggra2640.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=258bp|location=Sequence derived from alignment at tig00000005_pilon:1012642..1012899+ (Gracilaria gracilis GNS1m male)
ATGTCGTCTAGCAACCCCAGTGCCAACGCCACATCCCCATCTCCTTCACG
CCCGCAGTCTTCCGGGGTGAATGCCGAGGGCAACCGTTTCAACACACCTG
GAGGCACCAACTCTAATGTGAGCACTTCATATCACTACAGTAACAAGGAT
GGCAGCTATTACTACCGCAACGATAACGGGTCTTCGTATTACTGCGCCCC
TTCTGGTAAGGGGTATTACAAACGTACGAGCGAATCCAAATGGCAGCGCA
AGTCTTAG
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Coding sequence (CDS) from alignment at tig00000005_pilon:1012642..1012899+

>Ggra2640.t1 ID=Ggra2640.t1|Name=Ggra2640.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=258bp|location=Sequence derived from alignment at tig00000005_pilon:1012642..1012899+ (Gracilaria gracilis GNS1m male)
ATGTCGTCTAGCAACCCCAGTGCCAACGCCACATCCCCATCTCCTTCACG
CCCGCAGTCTTCCGGGGTGAATGCCGAGGGCAACCGTTTCAACACACCTG
GAGGCACCAACTCTAATGTGAGCACTTCATATCACTACAGTAACAAGGAT
GGCAGCTATTACTACCGCAACGATAACGGGTCTTCGTATTACTGCGCCCC
TTCTGGTAAGGGGTATTACAAACGTACGAGCGAATCCAAATGGCAGCGCA
AGTCTTAG
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