Ggra2638.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra2638.t1
Unique NameGgra2638.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length86
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000005_piloncontigtig00000005_pilon:1009677..1010036 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra2638Ggra2638Gracilaria gracilis GNS1m malegenetig00000005_pilon 1009677..1010036 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2638.t1Ggra2638.t1Gracilaria gracilis GNS1m malepolypeptidetig00000005_pilon 1009677..1010036 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2638.t1.stop1Ggra2638.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000005_pilon 1009677..1009679 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2638.t1.CDS1Ggra2638.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000005_pilon 1009677..1009804 -
Ggra2638.t1.CDS2Ggra2638.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000005_pilon 1009907..1010036 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2638.t1.exon1Ggra2638.t1.exon1Gracilaria gracilis GNS1m maleexontig00000005_pilon 1009677..1009804 -
Ggra2638.t1.exon2Ggra2638.t1.exon2Gracilaria gracilis GNS1m maleexontig00000005_pilon 1009907..1010036 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2638.t1.intron1Ggra2638.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000005_pilon 1009805..1009906 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2638.t1.start1Ggra2638.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000005_pilon 1010034..1010036 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra2638.t1 ID=Ggra2638.t1|Name=Ggra2638.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=86bp
MKQFVNDLGVTYEDGIENCGTSGQIAGLAILLEEVIALEAEIKEIRRVRM
GERRSIDRLRRIMMLFFALQVVYLITSGFNIFTGS*
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spliced messenger RNA

>Ggra2638.t1 ID=Ggra2638.t1|Name=Ggra2638.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=258bp|location=Sequence derived from alignment at tig00000005_pilon:1009677..1010036- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAACAATTTGTGAACGACTTGGGGGTTACTTATGAGGATGGAATTGA
GAACTGCGGTACCAGTGGCCAGATAGCTGGGTTAGCCATATTATTGGAAG
AGGTAATAGCGCTAGAAGCAGAAATCAAAGAAATCCGAAGAGTTCGGATG
GGGGAAAGGCGAAGTATAGATCGGTTACGGCGGATCATGATGCTGTTCTT
TGCGCTGCAGGTCGTTTATCTGATAACTAGCGGATTCAACATCTTCACCG
GCTCATAA
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protein sequence of Ggra2638.t1

>Ggra2638.t1 ID=Ggra2638.t1|Name=Ggra2638.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=86bp
MKQFVNDLGVTYEDGIENCGTSGQIAGLAILLEEVIALEAEIKEIRRVRM
GERRSIDRLRRIMMLFFALQVVYLITSGFNIFTGS*
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mRNA from alignment at tig00000005_pilon:1009677..1010036-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra2638.t1 ID=Ggra2638.t1|Name=Ggra2638.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=360bp|location=Sequence derived from alignment at tig00000005_pilon:1009677..1010036- (Gracilaria gracilis GNS1m male)
ATGAAACAATTTGTGAACGACTTGGGGGTTACTTATGAGGATGGAATTGA
GAACTGCGGTACCAGTGGCCAGATAGCTGGGTTAGCCATATTATTGGAAG
AGGTAATAGCGCTAGAAGCAGAAATCAAAGGTACGATGGCAAGCTACGTG
CCTATGTTGATGCTAGACGGCTATATACTATATTCCATATGGGTCTGTGC
TAACAGTTTTTCCCTTTTTGTGAGCTATTCAGAAATCCGAAGAGTTCGGA
TGGGGGAAAGGCGAAGTATAGATCGGTTACGGCGGATCATGATGCTGTTC
TTTGCGCTGCAGGTCGTTTATCTGATAACTAGCGGATTCAACATCTTCAC
CGGCTCATAA
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Coding sequence (CDS) from alignment at tig00000005_pilon:1009677..1010036-

>Ggra2638.t1 ID=Ggra2638.t1|Name=Ggra2638.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=258bp|location=Sequence derived from alignment at tig00000005_pilon:1009677..1010036- (Gracilaria gracilis GNS1m male)
ATGAAACAATTTGTGAACGACTTGGGGGTTACTTATGAGGATGGAATTGA
GAACTGCGGTACCAGTGGCCAGATAGCTGGGTTAGCCATATTATTGGAAG
AGGTAATAGCGCTAGAAGCAGAAATCAAAGAAATCCGAAGAGTTCGGATG
GGGGAAAGGCGAAGTATAGATCGGTTACGGCGGATCATGATGCTGTTCTT
TGCGCTGCAGGTCGTTTATCTGATAACTAGCGGATTCAACATCTTCACCG
GCTCATAA
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