Ggra2633.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra2633.t1
Unique NameGgra2633.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length382
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000005_piloncontigtig00000005_pilon:998494..999639 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog946362.XP_004998948.1
Preferred nameC9orf41
PFAMsN2227
Max annot lvl33154|Opisthokonta
KEGG rclassRC00003,RC00333
KEGG koko:K19787
KEGG ReactionR02144
KEGG Pathwayko00340,map00340
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0006082,GO:0006464,GO:0006479,GO:0006518,GO:0006520,GO:0006547,GO:0006548,GO:0006575,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0008213,GO:0008757,GO:0009056,GO:0009063,GO:0009987,GO:0016054,GO:0016740,GO:0016741,GO:0017144,GO:0019439,GO:0019538,GO:0019752,GO:0030735,GO:0032259,GO:0034641,GO:0035498,GO:0036211,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043414,GO:0043436,GO:0043603,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044267,GO:0044270,GO:0044281,GO:0044282,GO:0044424,GO:0044444,GO:0044464,GO:0046395,GO:0046483,GO:0046700,GO:0052803,GO:0052805,GO:0071704,GO:1901360,GO:1901361,GO:1901564,GO:1901565,GO:1901575,GO:1901605,GO:1901606
Evalue2e-48
EggNOG OGsKOG2798@1|root,KOG2798@2759|Eukaryota,38H1C@33154|Opisthokonta
EC2.1.1.22
Descriptioncarnosine N-methyltransferase activity
COG categoryG
BRITEko00000,ko00001,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra2633Ggra2633Gracilaria gracilis GNS1m malegenetig00000005_pilon 998494..999639 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2633.t1.stop1Ggra2633.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000005_pilon 998494..998496 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2633.t1.CDS1Ggra2633.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000005_pilon 998494..999639 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2633.t1.exon1Ggra2633.t1.exon1Gracilaria gracilis GNS1m maleexontig00000005_pilon 998494..999639 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2633.t1.start1Ggra2633.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000005_pilon 999637..999639 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2633.t1Ggra2633.t1Gracilaria gracilis GNS1m malepolypeptidetig00000005_pilon 998494..999639 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra2633.t1 ID=Ggra2633.t1|Name=Ggra2633.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=382bp
MSDHGISLQQFPAKALDAYGKVEFSRLDRKLTMFRTLPENDRDLLPEFDQ
RLSAIAECIEQNTQLLSVMVQSAASIRAPISTTTKEQNGPGNDEDTHVKE
KKANGDLEHDAANDEQKQYLARQVCRGFALLARDWSADGAQQRSICYKPL
LEAVEHAYEEAARASRSLARKDFRVLVPGTGAGRLPWELVHRGFTVEGCE
ANASALLVGNYVLNNCSHDDAITVYPFAHDHSNVRSRSQAIRGVQVPDVN
PKDIPPQTDFSIRAGSFLDAYDGHDSSWDAVVSCMAFDLGESVIAHVRRV
SQILKPGGVWAFVGPMPCLDGGQSDMIHLSIGEFMTIVRKSGFKMVKQDM
VRCMHSNDPISMRAVHVECPLVVALKVRPAL*
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spliced messenger RNA

>Ggra2633.t1 ID=Ggra2633.t1|Name=Ggra2633.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1146bp|location=Sequence derived from alignment at tig00000005_pilon:998494..999639- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCTGACCACGGCATCAGTCTTCAGCAGTTTCCAGCCAAGGCACTAGA
TGCCTATGGGAAAGTGGAATTCTCACGCCTCGATCGCAAGCTTACCATGT
TTCGCACCCTGCCCGAGAACGACCGCGATCTTCTCCCGGAATTTGACCAA
CGTCTGTCTGCCATTGCCGAATGCATCGAGCAGAACACCCAGCTGTTATC
CGTCATGGTGCAAAGTGCCGCCTCCATACGTGCGCCTATCTCAACTACCA
CAAAGGAGCAAAACGGTCCTGGTAACGACGAGGATACACATGTCAAGGAG
AAGAAGGCAAACGGTGATTTGGAACATGACGCTGCGAATGATGAGCAGAA
GCAATACCTAGCACGTCAGGTTTGTCGGGGCTTCGCTCTGCTTGCGAGGG
ATTGGAGCGCTGATGGGGCTCAGCAACGTTCAATTTGCTACAAGCCACTA
CTGGAAGCTGTGGAACATGCGTATGAAGAAGCTGCCCGTGCTTCAAGGTC
TCTTGCTCGAAAGGACTTTCGTGTGTTGGTGCCAGGGACAGGAGCGGGGC
GCTTACCATGGGAGTTGGTTCATCGTGGCTTTACGGTTGAAGGGTGTGAG
GCCAATGCAAGCGCGCTGCTCGTTGGAAACTACGTTCTGAATAATTGCAG
CCATGATGATGCTATAACAGTGTACCCGTTTGCTCATGACCATTCGAATG
TCAGATCAAGGTCACAGGCGATTAGAGGCGTGCAGGTACCCGACGTGAAC
CCGAAGGACATTCCACCACAGACCGATTTCTCAATTCGGGCGGGCAGTTT
TCTTGACGCATATGATGGACATGACAGTAGCTGGGACGCTGTCGTGAGCT
GCATGGCCTTCGACCTTGGTGAGTCGGTGATAGCACACGTGCGCAGGGTA
TCGCAAATTCTGAAACCGGGCGGTGTTTGGGCGTTTGTCGGACCGATGCC
ATGTCTGGATGGAGGTCAGAGCGATATGATTCACTTGTCGATTGGGGAGT
TCATGACAATTGTGAGAAAGAGTGGTTTCAAAATGGTTAAACAGGATATG
GTTCGTTGCATGCATTCAAATGATCCCATCTCTATGCGCGCAGTGCACGT
GGAATGTCCTCTTGTAGTTGCTCTTAAAGTAAGACCAGCGTTGTAG
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protein sequence of Ggra2633.t1

>Ggra2633.t1 ID=Ggra2633.t1|Name=Ggra2633.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=382bp
MSDHGISLQQFPAKALDAYGKVEFSRLDRKLTMFRTLPENDRDLLPEFDQ
RLSAIAECIEQNTQLLSVMVQSAASIRAPISTTTKEQNGPGNDEDTHVKE
KKANGDLEHDAANDEQKQYLARQVCRGFALLARDWSADGAQQRSICYKPL
LEAVEHAYEEAARASRSLARKDFRVLVPGTGAGRLPWELVHRGFTVEGCE
ANASALLVGNYVLNNCSHDDAITVYPFAHDHSNVRSRSQAIRGVQVPDVN
PKDIPPQTDFSIRAGSFLDAYDGHDSSWDAVVSCMAFDLGESVIAHVRRV
SQILKPGGVWAFVGPMPCLDGGQSDMIHLSIGEFMTIVRKSGFKMVKQDM
VRCMHSNDPISMRAVHVECPLVVALKVRPAL*
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mRNA from alignment at tig00000005_pilon:998494..999639-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra2633.t1 ID=Ggra2633.t1|Name=Ggra2633.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1146bp|location=Sequence derived from alignment at tig00000005_pilon:998494..999639- (Gracilaria gracilis GNS1m male)
ATGTCTGACCACGGCATCAGTCTTCAGCAGTTTCCAGCCAAGGCACTAGA
TGCCTATGGGAAAGTGGAATTCTCACGCCTCGATCGCAAGCTTACCATGT
TTCGCACCCTGCCCGAGAACGACCGCGATCTTCTCCCGGAATTTGACCAA
CGTCTGTCTGCCATTGCCGAATGCATCGAGCAGAACACCCAGCTGTTATC
CGTCATGGTGCAAAGTGCCGCCTCCATACGTGCGCCTATCTCAACTACCA
CAAAGGAGCAAAACGGTCCTGGTAACGACGAGGATACACATGTCAAGGAG
AAGAAGGCAAACGGTGATTTGGAACATGACGCTGCGAATGATGAGCAGAA
GCAATACCTAGCACGTCAGGTTTGTCGGGGCTTCGCTCTGCTTGCGAGGG
ATTGGAGCGCTGATGGGGCTCAGCAACGTTCAATTTGCTACAAGCCACTA
CTGGAAGCTGTGGAACATGCGTATGAAGAAGCTGCCCGTGCTTCAAGGTC
TCTTGCTCGAAAGGACTTTCGTGTGTTGGTGCCAGGGACAGGAGCGGGGC
GCTTACCATGGGAGTTGGTTCATCGTGGCTTTACGGTTGAAGGGTGTGAG
GCCAATGCAAGCGCGCTGCTCGTTGGAAACTACGTTCTGAATAATTGCAG
CCATGATGATGCTATAACAGTGTACCCGTTTGCTCATGACCATTCGAATG
TCAGATCAAGGTCACAGGCGATTAGAGGCGTGCAGGTACCCGACGTGAAC
CCGAAGGACATTCCACCACAGACCGATTTCTCAATTCGGGCGGGCAGTTT
TCTTGACGCATATGATGGACATGACAGTAGCTGGGACGCTGTCGTGAGCT
GCATGGCCTTCGACCTTGGTGAGTCGGTGATAGCACACGTGCGCAGGGTA
TCGCAAATTCTGAAACCGGGCGGTGTTTGGGCGTTTGTCGGACCGATGCC
ATGTCTGGATGGAGGTCAGAGCGATATGATTCACTTGTCGATTGGGGAGT
TCATGACAATTGTGAGAAAGAGTGGTTTCAAAATGGTTAAACAGGATATG
GTTCGTTGCATGCATTCAAATGATCCCATCTCTATGCGCGCAGTGCACGT
GGAATGTCCTCTTGTAGTTGCTCTTAAAGTAAGACCAGCGTTGTAG
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Coding sequence (CDS) from alignment at tig00000005_pilon:998494..999639-

>Ggra2633.t1 ID=Ggra2633.t1|Name=Ggra2633.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1146bp|location=Sequence derived from alignment at tig00000005_pilon:998494..999639- (Gracilaria gracilis GNS1m male)
ATGTCTGACCACGGCATCAGTCTTCAGCAGTTTCCAGCCAAGGCACTAGA
TGCCTATGGGAAAGTGGAATTCTCACGCCTCGATCGCAAGCTTACCATGT
TTCGCACCCTGCCCGAGAACGACCGCGATCTTCTCCCGGAATTTGACCAA
CGTCTGTCTGCCATTGCCGAATGCATCGAGCAGAACACCCAGCTGTTATC
CGTCATGGTGCAAAGTGCCGCCTCCATACGTGCGCCTATCTCAACTACCA
CAAAGGAGCAAAACGGTCCTGGTAACGACGAGGATACACATGTCAAGGAG
AAGAAGGCAAACGGTGATTTGGAACATGACGCTGCGAATGATGAGCAGAA
GCAATACCTAGCACGTCAGGTTTGTCGGGGCTTCGCTCTGCTTGCGAGGG
ATTGGAGCGCTGATGGGGCTCAGCAACGTTCAATTTGCTACAAGCCACTA
CTGGAAGCTGTGGAACATGCGTATGAAGAAGCTGCCCGTGCTTCAAGGTC
TCTTGCTCGAAAGGACTTTCGTGTGTTGGTGCCAGGGACAGGAGCGGGGC
GCTTACCATGGGAGTTGGTTCATCGTGGCTTTACGGTTGAAGGGTGTGAG
GCCAATGCAAGCGCGCTGCTCGTTGGAAACTACGTTCTGAATAATTGCAG
CCATGATGATGCTATAACAGTGTACCCGTTTGCTCATGACCATTCGAATG
TCAGATCAAGGTCACAGGCGATTAGAGGCGTGCAGGTACCCGACGTGAAC
CCGAAGGACATTCCACCACAGACCGATTTCTCAATTCGGGCGGGCAGTTT
TCTTGACGCATATGATGGACATGACAGTAGCTGGGACGCTGTCGTGAGCT
GCATGGCCTTCGACCTTGGTGAGTCGGTGATAGCACACGTGCGCAGGGTA
TCGCAAATTCTGAAACCGGGCGGTGTTTGGGCGTTTGTCGGACCGATGCC
ATGTCTGGATGGAGGTCAGAGCGATATGATTCACTTGTCGATTGGGGAGT
TCATGACAATTGTGAGAAAGAGTGGTTTCAAAATGGTTAAACAGGATATG
GTTCGTTGCATGCATTCAAATGATCCCATCTCTATGCGCGCAGTGCACGT
GGAATGTCCTCTTGTAGTTGCTCTTAAAGTAAGACCAGCGTTGTAG
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