Ggra2614.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra2614.t1
Unique NameGgra2614.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length487
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000005_piloncontigtig00000005_pilon:955104..956564 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog5786.XP_003291733.1
PFAMsAminotran_1_2
Max annot lvl554915|Amoebozoa
KEGG rclassRC00006,RC00008
KEGG koko:K00814
KEGG ReactionR00258
KEGG Pathwayko00220,ko00250,ko00710,ko01100,ko01120,ko01200,ko01210,ko01230,map00220,map00250,map00710,map01100,map01120,map01200,map01210,map01230
KEGG ModuleM00171
Evalue2.45e-177
EggNOG OGsCOG0436@1|root,KOG0258@2759|Eukaryota,3X8B9@554915|Amoebozoa
EC2.6.1.2
Descriptionalanine aminotransferase
COG categoryE
BRITEko00000,ko00001,ko00002,ko01000,ko01007
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra2614Ggra2614Gracilaria gracilis GNS1m malegenetig00000005_pilon 955104..956564 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2614.t1.stop1Ggra2614.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000005_pilon 955104..955106 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2614.t1.CDS1Ggra2614.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000005_pilon 955104..956564 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2614.t1.exon1Ggra2614.t1.exon1Gracilaria gracilis GNS1m maleexontig00000005_pilon 955104..956564 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2614.t1.start1Ggra2614.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000005_pilon 956562..956564 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2614.t1Ggra2614.t1Gracilaria gracilis GNS1m malepolypeptidetig00000005_pilon 955104..956564 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra2614.t1 ID=Ggra2614.t1|Name=Ggra2614.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=487bp
MATSAASPEPTSEYVKVLHNEGGFNESLQRMQYAVRGELVLRAQKLSRDL
DAGVKLPFSSITYCNIGNPQSVGQKPISFIRESLAAATCPSLLENSSLPQ
DVVDRTRAFLGCCQSVGAYSESKGVNFVRKRIAKAIEDRDGYPADPSSLF
LGNGASDAVKALLHIIIRDSTDGILIPIPQYPLYSATLTSISGRQVDYYL
DEDHGWSLSIDELKNSLYKAREEGTQVRAIVVINPGNPTGQVLSEENMRE
IVRFCEAESLVIMADEVYQKNVYVENKPFISFKKVVCDMKSPVELASFHS
ISKGVIGECGLRGGYVELHNMGQDLSELLYKVFSTSLCSNLLGQYAIDLM
MTPPKEGEQSYSLYKRETDDIYNDLKAKAQKLCKGLNTLEGVSCNDSEGA
MYLFPKIRMPKKAIEAAKNRGYACADVLYCFELLEATGICVVPGSGFGQR
EGTYHFRTTFLPSREKIDRVVESMRTFHDQFLRRYS*
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spliced messenger RNA

>Ggra2614.t1 ID=Ggra2614.t1|Name=Ggra2614.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1461bp|location=Sequence derived from alignment at tig00000005_pilon:955104..956564- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCAACTTCAGCAGCATCACCCGAGCCAACTTCAGAATATGTCAAAGT
TCTCCACAACGAAGGAGGTTTTAACGAGAGCCTGCAACGCATGCAATACG
CCGTTCGTGGAGAGCTTGTTCTTCGTGCACAAAAGCTTTCTCGTGACTTG
GATGCAGGCGTTAAGCTACCTTTCTCAAGCATAACCTATTGCAATATAGG
TAATCCACAATCAGTCGGTCAGAAACCTATATCCTTCATTCGCGAAAGCT
TAGCTGCCGCTACTTGCCCTTCTCTTCTCGAAAATAGTTCTCTTCCCCAG
GATGTCGTCGACAGGACGCGGGCATTTTTGGGATGCTGTCAAAGCGTTGG
AGCTTACTCGGAGAGCAAAGGGGTGAATTTTGTTCGAAAGCGGATTGCTA
AGGCAATTGAAGACAGAGATGGGTACCCTGCAGATCCAAGTTCACTATTT
CTGGGCAATGGTGCGAGTGACGCTGTAAAGGCACTGCTCCACATCATCAT
TAGAGATTCAACAGATGGCATTCTTATACCTATTCCTCAGTACCCGTTGT
ATTCCGCCACATTGACTTCTATCTCCGGCAGACAAGTTGATTATTACTTG
GATGAAGATCATGGGTGGTCCCTGAGCATTGATGAACTGAAGAATAGTCT
CTACAAAGCTAGGGAAGAAGGAACCCAAGTTCGTGCCATAGTCGTCATAA
ACCCAGGAAACCCAACTGGCCAAGTACTCTCTGAAGAGAACATGCGCGAG
ATAGTTCGTTTCTGCGAAGCAGAAAGTTTGGTGATTATGGCCGATGAGGT
ATACCAAAAGAACGTCTACGTGGAGAACAAGCCGTTCATATCTTTCAAAA
AGGTGGTTTGTGATATGAAGAGCCCAGTGGAGCTCGCCAGCTTTCATAGC
ATTTCCAAGGGGGTCATTGGAGAATGCGGTTTGCGCGGCGGCTACGTAGA
GTTACACAATATGGGGCAGGATCTGAGCGAACTTCTCTACAAGGTGTTTT
CTACTTCGCTTTGCTCAAACTTACTTGGACAATATGCCATCGATTTGATG
ATGACTCCACCAAAAGAAGGGGAACAGTCCTACAGTCTGTATAAACGAGA
AACAGACGATATCTACAACGACCTTAAAGCAAAAGCACAGAAGCTTTGTA
AAGGTCTGAATACTCTCGAAGGTGTCAGCTGCAACGACTCTGAAGGAGCA
ATGTATCTCTTCCCTAAAATACGCATGCCGAAGAAAGCGATTGAGGCAGC
TAAGAACCGTGGTTACGCGTGTGCTGATGTCCTCTATTGCTTTGAACTCT
TGGAAGCAACTGGGATATGTGTTGTTCCTGGTTCAGGATTTGGGCAACGT
GAAGGAACATATCACTTCCGAACAACGTTCTTACCCTCACGAGAAAAGAT
TGACCGCGTGGTTGAAAGTATGCGAACTTTTCACGACCAATTTCTTCGTA
GGTACTCGTAA
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protein sequence of Ggra2614.t1

>Ggra2614.t1 ID=Ggra2614.t1|Name=Ggra2614.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=487bp
MATSAASPEPTSEYVKVLHNEGGFNESLQRMQYAVRGELVLRAQKLSRDL
DAGVKLPFSSITYCNIGNPQSVGQKPISFIRESLAAATCPSLLENSSLPQ
DVVDRTRAFLGCCQSVGAYSESKGVNFVRKRIAKAIEDRDGYPADPSSLF
LGNGASDAVKALLHIIIRDSTDGILIPIPQYPLYSATLTSISGRQVDYYL
DEDHGWSLSIDELKNSLYKAREEGTQVRAIVVINPGNPTGQVLSEENMRE
IVRFCEAESLVIMADEVYQKNVYVENKPFISFKKVVCDMKSPVELASFHS
ISKGVIGECGLRGGYVELHNMGQDLSELLYKVFSTSLCSNLLGQYAIDLM
MTPPKEGEQSYSLYKRETDDIYNDLKAKAQKLCKGLNTLEGVSCNDSEGA
MYLFPKIRMPKKAIEAAKNRGYACADVLYCFELLEATGICVVPGSGFGQR
EGTYHFRTTFLPSREKIDRVVESMRTFHDQFLRRYS*
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mRNA from alignment at tig00000005_pilon:955104..956564-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra2614.t1 ID=Ggra2614.t1|Name=Ggra2614.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1461bp|location=Sequence derived from alignment at tig00000005_pilon:955104..956564- (Gracilaria gracilis GNS1m male)
ATGGCAACTTCAGCAGCATCACCCGAGCCAACTTCAGAATATGTCAAAGT
TCTCCACAACGAAGGAGGTTTTAACGAGAGCCTGCAACGCATGCAATACG
CCGTTCGTGGAGAGCTTGTTCTTCGTGCACAAAAGCTTTCTCGTGACTTG
GATGCAGGCGTTAAGCTACCTTTCTCAAGCATAACCTATTGCAATATAGG
TAATCCACAATCAGTCGGTCAGAAACCTATATCCTTCATTCGCGAAAGCT
TAGCTGCCGCTACTTGCCCTTCTCTTCTCGAAAATAGTTCTCTTCCCCAG
GATGTCGTCGACAGGACGCGGGCATTTTTGGGATGCTGTCAAAGCGTTGG
AGCTTACTCGGAGAGCAAAGGGGTGAATTTTGTTCGAAAGCGGATTGCTA
AGGCAATTGAAGACAGAGATGGGTACCCTGCAGATCCAAGTTCACTATTT
CTGGGCAATGGTGCGAGTGACGCTGTAAAGGCACTGCTCCACATCATCAT
TAGAGATTCAACAGATGGCATTCTTATACCTATTCCTCAGTACCCGTTGT
ATTCCGCCACATTGACTTCTATCTCCGGCAGACAAGTTGATTATTACTTG
GATGAAGATCATGGGTGGTCCCTGAGCATTGATGAACTGAAGAATAGTCT
CTACAAAGCTAGGGAAGAAGGAACCCAAGTTCGTGCCATAGTCGTCATAA
ACCCAGGAAACCCAACTGGCCAAGTACTCTCTGAAGAGAACATGCGCGAG
ATAGTTCGTTTCTGCGAAGCAGAAAGTTTGGTGATTATGGCCGATGAGGT
ATACCAAAAGAACGTCTACGTGGAGAACAAGCCGTTCATATCTTTCAAAA
AGGTGGTTTGTGATATGAAGAGCCCAGTGGAGCTCGCCAGCTTTCATAGC
ATTTCCAAGGGGGTCATTGGAGAATGCGGTTTGCGCGGCGGCTACGTAGA
GTTACACAATATGGGGCAGGATCTGAGCGAACTTCTCTACAAGGTGTTTT
CTACTTCGCTTTGCTCAAACTTACTTGGACAATATGCCATCGATTTGATG
ATGACTCCACCAAAAGAAGGGGAACAGTCCTACAGTCTGTATAAACGAGA
AACAGACGATATCTACAACGACCTTAAAGCAAAAGCACAGAAGCTTTGTA
AAGGTCTGAATACTCTCGAAGGTGTCAGCTGCAACGACTCTGAAGGAGCA
ATGTATCTCTTCCCTAAAATACGCATGCCGAAGAAAGCGATTGAGGCAGC
TAAGAACCGTGGTTACGCGTGTGCTGATGTCCTCTATTGCTTTGAACTCT
TGGAAGCAACTGGGATATGTGTTGTTCCTGGTTCAGGATTTGGGCAACGT
GAAGGAACATATCACTTCCGAACAACGTTCTTACCCTCACGAGAAAAGAT
TGACCGCGTGGTTGAAAGTATGCGAACTTTTCACGACCAATTTCTTCGTA
GGTACTCGTAA
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Coding sequence (CDS) from alignment at tig00000005_pilon:955104..956564-

>Ggra2614.t1 ID=Ggra2614.t1|Name=Ggra2614.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1461bp|location=Sequence derived from alignment at tig00000005_pilon:955104..956564- (Gracilaria gracilis GNS1m male)
ATGGCAACTTCAGCAGCATCACCCGAGCCAACTTCAGAATATGTCAAAGT
TCTCCACAACGAAGGAGGTTTTAACGAGAGCCTGCAACGCATGCAATACG
CCGTTCGTGGAGAGCTTGTTCTTCGTGCACAAAAGCTTTCTCGTGACTTG
GATGCAGGCGTTAAGCTACCTTTCTCAAGCATAACCTATTGCAATATAGG
TAATCCACAATCAGTCGGTCAGAAACCTATATCCTTCATTCGCGAAAGCT
TAGCTGCCGCTACTTGCCCTTCTCTTCTCGAAAATAGTTCTCTTCCCCAG
GATGTCGTCGACAGGACGCGGGCATTTTTGGGATGCTGTCAAAGCGTTGG
AGCTTACTCGGAGAGCAAAGGGGTGAATTTTGTTCGAAAGCGGATTGCTA
AGGCAATTGAAGACAGAGATGGGTACCCTGCAGATCCAAGTTCACTATTT
CTGGGCAATGGTGCGAGTGACGCTGTAAAGGCACTGCTCCACATCATCAT
TAGAGATTCAACAGATGGCATTCTTATACCTATTCCTCAGTACCCGTTGT
ATTCCGCCACATTGACTTCTATCTCCGGCAGACAAGTTGATTATTACTTG
GATGAAGATCATGGGTGGTCCCTGAGCATTGATGAACTGAAGAATAGTCT
CTACAAAGCTAGGGAAGAAGGAACCCAAGTTCGTGCCATAGTCGTCATAA
ACCCAGGAAACCCAACTGGCCAAGTACTCTCTGAAGAGAACATGCGCGAG
ATAGTTCGTTTCTGCGAAGCAGAAAGTTTGGTGATTATGGCCGATGAGGT
ATACCAAAAGAACGTCTACGTGGAGAACAAGCCGTTCATATCTTTCAAAA
AGGTGGTTTGTGATATGAAGAGCCCAGTGGAGCTCGCCAGCTTTCATAGC
ATTTCCAAGGGGGTCATTGGAGAATGCGGTTTGCGCGGCGGCTACGTAGA
GTTACACAATATGGGGCAGGATCTGAGCGAACTTCTCTACAAGGTGTTTT
CTACTTCGCTTTGCTCAAACTTACTTGGACAATATGCCATCGATTTGATG
ATGACTCCACCAAAAGAAGGGGAACAGTCCTACAGTCTGTATAAACGAGA
AACAGACGATATCTACAACGACCTTAAAGCAAAAGCACAGAAGCTTTGTA
AAGGTCTGAATACTCTCGAAGGTGTCAGCTGCAACGACTCTGAAGGAGCA
ATGTATCTCTTCCCTAAAATACGCATGCCGAAGAAAGCGATTGAGGCAGC
TAAGAACCGTGGTTACGCGTGTGCTGATGTCCTCTATTGCTTTGAACTCT
TGGAAGCAACTGGGATATGTGTTGTTCCTGGTTCAGGATTTGGGCAACGT
GAAGGAACATATCACTTCCGAACAACGTTCTTACCCTCACGAGAAAAGAT
TGACCGCGTGGTTGAAAGTATGCGAACTTTTCACGACCAATTTCTTCGTA
GGTACTCGTAA
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