Ggra2610.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra2610.t1
Unique NameGgra2610.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length290
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000005_piloncontigtig00000005_pilon:945893..946762 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog3055.EDO98946
PFAMsRhodanese
Max annot lvl3041|Chlorophyta
KEGG rclassRC00214
KEGG koko:K01011
KEGG ReactionR01931,R03105,R03106
KEGG Pathwayko00270,ko00920,ko01100,ko01120,ko04122,map00270,map00920,map01100,map01120,map04122
Evalue1.67e-74
EggNOG OGsCOG2897@1|root,KOG1529@2759|Eukaryota,37P5M@33090|Viridiplantae,34JH0@3041|Chlorophyta
EC2.8.1.1,2.8.1.2
DescriptionRhodanese Homology Domain
COG categoryH
BRITEko00000,ko00001,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra2610Ggra2610Gracilaria gracilis GNS1m malegenetig00000005_pilon 945893..946762 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2610.t1.stop1Ggra2610.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000005_pilon 945893..945895 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2610.t1.CDS1Ggra2610.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000005_pilon 945893..946762 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2610.t1.exon1Ggra2610.t1.exon1Gracilaria gracilis GNS1m maleexontig00000005_pilon 945893..946762 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2610.t1.start1Ggra2610.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000005_pilon 946760..946762 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2610.t1Ggra2610.t1Gracilaria gracilis GNS1m malepolypeptidetig00000005_pilon 945893..946762 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra2610.t1 ID=Ggra2610.t1|Name=Ggra2610.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=290bp
MSSSSHPSALVDPKWLVSRLSDVTILDASWYMPKEKRDPYGDYTKKRISG
ARFFDIDGPGLSDQSSSLAHMLPQPKEFAAKVSELGVSNEKPVVIYAQSG
FVGAARAWWMFRLHGKEDSYLLDGGLNEWESQNLPVDTRPPPEHTLVKSS
SPFVSNVNHDLVRDMQYMLRQINDRNGVIIDARSKGRFDGTSPEPRPGLL
SGHMPGAYNLPSRTLVSSGKMKTVEELQQVFEEAGLHPNSITQPVSLTCG
SGVTAAILCVALHELGVEAAVYDGSWSEYGAESSNPVTT*
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spliced messenger RNA

>Ggra2610.t1 ID=Ggra2610.t1|Name=Ggra2610.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=870bp|location=Sequence derived from alignment at tig00000005_pilon:945893..946762- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCGTCATCTTCTCATCCTTCAGCTTTAGTGGATCCGAAATGGTTGGT
CTCTCGGCTGAGTGATGTAACCATTCTGGATGCATCGTGGTATATGCCTA
AGGAAAAGCGTGATCCCTACGGCGACTATACCAAGAAAAGGATCAGTGGT
GCCCGCTTCTTCGACATAGACGGGCCCGGTTTGAGTGATCAATCTTCTTC
GTTGGCGCATATGTTACCACAACCAAAAGAATTTGCCGCGAAAGTATCTG
AGCTTGGTGTCTCTAACGAAAAACCGGTAGTCATTTATGCTCAATCTGGT
TTTGTTGGTGCGGCTCGCGCATGGTGGATGTTCCGACTTCACGGGAAGGA
AGATTCGTACTTACTGGACGGTGGATTGAACGAATGGGAGAGCCAAAATT
TACCTGTTGATACCAGACCACCTCCGGAACACACACTCGTTAAGTCGAGC
TCACCATTCGTTTCAAATGTAAACCATGACCTCGTTCGTGACATGCAATA
CATGCTCCGCCAAATCAACGACCGGAACGGAGTGATCATCGATGCGAGAT
CGAAAGGTCGTTTTGACGGAACAAGTCCAGAGCCGAGACCAGGTTTGCTT
AGCGGGCATATGCCTGGTGCTTACAATTTGCCAAGTCGGACTCTTGTCTC
CTCGGGAAAGATGAAAACCGTTGAAGAACTACAACAGGTCTTTGAGGAAG
CTGGATTGCATCCGAATAGCATAACTCAACCTGTTTCACTCACATGTGGG
AGTGGAGTTACTGCTGCGATTCTGTGCGTCGCCCTTCATGAGCTCGGAGT
AGAGGCCGCCGTTTACGATGGGAGTTGGAGTGAGTATGGGGCAGAAAGCA
GTAACCCCGTTACGACATGA
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protein sequence of Ggra2610.t1

>Ggra2610.t1 ID=Ggra2610.t1|Name=Ggra2610.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=290bp
MSSSSHPSALVDPKWLVSRLSDVTILDASWYMPKEKRDPYGDYTKKRISG
ARFFDIDGPGLSDQSSSLAHMLPQPKEFAAKVSELGVSNEKPVVIYAQSG
FVGAARAWWMFRLHGKEDSYLLDGGLNEWESQNLPVDTRPPPEHTLVKSS
SPFVSNVNHDLVRDMQYMLRQINDRNGVIIDARSKGRFDGTSPEPRPGLL
SGHMPGAYNLPSRTLVSSGKMKTVEELQQVFEEAGLHPNSITQPVSLTCG
SGVTAAILCVALHELGVEAAVYDGSWSEYGAESSNPVTT*
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mRNA from alignment at tig00000005_pilon:945893..946762-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra2610.t1 ID=Ggra2610.t1|Name=Ggra2610.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=870bp|location=Sequence derived from alignment at tig00000005_pilon:945893..946762- (Gracilaria gracilis GNS1m male)
ATGTCGTCATCTTCTCATCCTTCAGCTTTAGTGGATCCGAAATGGTTGGT
CTCTCGGCTGAGTGATGTAACCATTCTGGATGCATCGTGGTATATGCCTA
AGGAAAAGCGTGATCCCTACGGCGACTATACCAAGAAAAGGATCAGTGGT
GCCCGCTTCTTCGACATAGACGGGCCCGGTTTGAGTGATCAATCTTCTTC
GTTGGCGCATATGTTACCACAACCAAAAGAATTTGCCGCGAAAGTATCTG
AGCTTGGTGTCTCTAACGAAAAACCGGTAGTCATTTATGCTCAATCTGGT
TTTGTTGGTGCGGCTCGCGCATGGTGGATGTTCCGACTTCACGGGAAGGA
AGATTCGTACTTACTGGACGGTGGATTGAACGAATGGGAGAGCCAAAATT
TACCTGTTGATACCAGACCACCTCCGGAACACACACTCGTTAAGTCGAGC
TCACCATTCGTTTCAAATGTAAACCATGACCTCGTTCGTGACATGCAATA
CATGCTCCGCCAAATCAACGACCGGAACGGAGTGATCATCGATGCGAGAT
CGAAAGGTCGTTTTGACGGAACAAGTCCAGAGCCGAGACCAGGTTTGCTT
AGCGGGCATATGCCTGGTGCTTACAATTTGCCAAGTCGGACTCTTGTCTC
CTCGGGAAAGATGAAAACCGTTGAAGAACTACAACAGGTCTTTGAGGAAG
CTGGATTGCATCCGAATAGCATAACTCAACCTGTTTCACTCACATGTGGG
AGTGGAGTTACTGCTGCGATTCTGTGCGTCGCCCTTCATGAGCTCGGAGT
AGAGGCCGCCGTTTACGATGGGAGTTGGAGTGAGTATGGGGCAGAAAGCA
GTAACCCCGTTACGACATGA
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Coding sequence (CDS) from alignment at tig00000005_pilon:945893..946762-

>Ggra2610.t1 ID=Ggra2610.t1|Name=Ggra2610.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=870bp|location=Sequence derived from alignment at tig00000005_pilon:945893..946762- (Gracilaria gracilis GNS1m male)
ATGTCGTCATCTTCTCATCCTTCAGCTTTAGTGGATCCGAAATGGTTGGT
CTCTCGGCTGAGTGATGTAACCATTCTGGATGCATCGTGGTATATGCCTA
AGGAAAAGCGTGATCCCTACGGCGACTATACCAAGAAAAGGATCAGTGGT
GCCCGCTTCTTCGACATAGACGGGCCCGGTTTGAGTGATCAATCTTCTTC
GTTGGCGCATATGTTACCACAACCAAAAGAATTTGCCGCGAAAGTATCTG
AGCTTGGTGTCTCTAACGAAAAACCGGTAGTCATTTATGCTCAATCTGGT
TTTGTTGGTGCGGCTCGCGCATGGTGGATGTTCCGACTTCACGGGAAGGA
AGATTCGTACTTACTGGACGGTGGATTGAACGAATGGGAGAGCCAAAATT
TACCTGTTGATACCAGACCACCTCCGGAACACACACTCGTTAAGTCGAGC
TCACCATTCGTTTCAAATGTAAACCATGACCTCGTTCGTGACATGCAATA
CATGCTCCGCCAAATCAACGACCGGAACGGAGTGATCATCGATGCGAGAT
CGAAAGGTCGTTTTGACGGAACAAGTCCAGAGCCGAGACCAGGTTTGCTT
AGCGGGCATATGCCTGGTGCTTACAATTTGCCAAGTCGGACTCTTGTCTC
CTCGGGAAAGATGAAAACCGTTGAAGAACTACAACAGGTCTTTGAGGAAG
CTGGATTGCATCCGAATAGCATAACTCAACCTGTTTCACTCACATGTGGG
AGTGGAGTTACTGCTGCGATTCTGTGCGTCGCCCTTCATGAGCTCGGAGT
AGAGGCCGCCGTTTACGATGGGAGTTGGAGTGAGTATGGGGCAGAAAGCA
GTAACCCCGTTACGACATGA
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