Ggra2608.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra2608.t1
Unique NameGgra2608.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length529
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000005_piloncontigtig00000005_pilon:941958..943544 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog2903.EOD18436
Preferred nameDLD2
PFAMsPyr_redox_2,Pyr_redox_dim
Max annot lvl2759|Eukaryota
KEGG rclassRC00004,RC00022,RC00583,RC02742,RC02833,RC02834
KEGG koko:K00382
KEGG ReactionR00209,R01221,R01698,R03815,R07618,R08549
KEGG Pathwayko00010,ko00020,ko00260,ko00280,ko00620,ko00630,ko00640,ko01100,ko01110,ko01120,ko01130,ko01200,map00010,map00020,map00260,map00280,map00620,map00630,map00640,map01100,map01110,map01120,map01130,map01200
KEGG ModuleM00009,M00011,M00036,M00307,M00532
GOsGO:0003674,GO:0003824,GO:0004148,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0006082,GO:0006084,GO:0006085,GO:0006086,GO:0006090,GO:0006139,GO:0006163,GO:0006164,GO:0006637,GO:0006725,GO:0006732,GO:0006753,GO:0006790,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009108,GO:0009117,GO:0009150,GO:0009152,GO:0009165,GO:0009259,GO:0009260,GO:0009507,GO:0009526,GO:0009532,GO:0009536,GO:0009570,GO:0009941,GO:0009987,GO:0016491,GO:0016651,GO:0016667,GO:0016668,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0019752,GO:0031967,GO:0031974,GO:0031975,GO:0031981,GO:0032787,GO:0033865,GO:0033866,GO:0033875,GO:0034030,GO:0034032,GO:0034033,GO:0034641,GO:0034654,GO:0035383,GO:0035384,GO:0042221,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044272,GO:0044281,GO:0044422,GO:0044424,GO:0044428,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0046390,GO:0046483,GO:0046685,GO:0050896,GO:0051186,GO:0051188,GO:0055086,GO:0055114,GO:0070013,GO:0071616,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576
Evalue7.25e-233
EggNOG OGsCOG1249@1|root,KOG1335@2759|Eukaryota
EC1.8.1.4
Descriptiondihydrolipoyl dehydrogenase activity
COG categoryC
BRITEbr01601,ko00000,ko00001,ko00002,ko01000,ko04147
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra2608Ggra2608Gracilaria gracilis GNS1m malegenetig00000005_pilon 941958..943544 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2608.t1.stop1Ggra2608.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000005_pilon 941958..941960 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2608.t1.CDS1Ggra2608.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000005_pilon 941958..943544 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2608.t1.exon1Ggra2608.t1.exon1Gracilaria gracilis GNS1m maleexontig00000005_pilon 941958..943544 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2608.t1.start1Ggra2608.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000005_pilon 943542..943544 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2608.t1Ggra2608.t1Gracilaria gracilis GNS1m malepolypeptidetig00000005_pilon 941958..943544 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra2608.t1 ID=Ggra2608.t1|Name=Ggra2608.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=529bp
MAFIAAVSPSSWAHRPQHSFICQRSSFIRTTVDRTANLKLRPLASKGTPR
ASFDYDLAIVGAGVGGHGAALHAVAKGLKVCIFEARDVGGTCVNRGCVPS
KALLAAAGRIREMKDADHLRALGISLDGVSYDRQGVADHANGLASKVKGN
MANSLSALGVTIINARATLTGAQSVKGSDGRTYTAESIILAPGSVPFVPR
GVEIDGKTVFTSDDALKMEWVPDWVAIVGSGYIGLEFSDVYTALGSNVTF
VEAMPNLMPGFDPEIARLAQRLLINPRSIDYHTNVFASKVTPGVPGQRPV
IIDLIDAGSKEPVDKLEVDAAMIATGRAPYTEGLGLESVQVETQRGFVPV
DERMRVLDKNGSVIEHLYAIGDVNGKMMLAHAASAQGISAVENIVGKEHK
VDHNAVPAACFTHPEISMVGLTEPAAKEKASSEGFDLGKSVGHFRANSKA
LAEGEGDGIAKVLFNKSNGKILGVHIIGLHAADLIQECSNAVARGTTVDE
LAFCVHTHPTLSEVVDEAIKGAVGMAAH*
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spliced messenger RNA

>Ggra2608.t1 ID=Ggra2608.t1|Name=Ggra2608.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1587bp|location=Sequence derived from alignment at tig00000005_pilon:941958..943544- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGTTTATCGCTGCAGTTTCTCCGTCATCCTGGGCCCATCGCCCGCA
ACATTCGTTCATTTGCCAAAGGTCTTCGTTCATTCGAACTACAGTCGATC
GCACTGCCAATCTGAAGTTGCGGCCTCTAGCATCAAAAGGAACTCCCCGT
GCTTCCTTCGATTATGATCTAGCGATCGTCGGCGCTGGTGTTGGAGGACA
TGGTGCGGCTCTCCATGCCGTTGCAAAGGGTTTGAAAGTCTGTATTTTCG
AGGCGCGTGATGTTGGCGGAACATGTGTCAATAGGGGCTGCGTTCCATCC
AAAGCCCTTCTCGCTGCCGCCGGTCGTATTCGGGAAATGAAGGATGCTGA
CCATTTGCGAGCTCTAGGCATATCTCTTGATGGAGTCTCGTATGACCGAC
AAGGAGTTGCCGATCATGCCAACGGCTTAGCGTCCAAAGTCAAAGGAAAC
ATGGCAAACTCATTAAGTGCACTCGGTGTCACGATCATTAATGCTAGAGC
GACGCTTACGGGTGCTCAAAGTGTGAAAGGATCTGACGGAAGGACATACA
CAGCAGAGAGCATCATTCTAGCACCTGGGAGCGTTCCCTTCGTGCCGAGA
GGCGTCGAAATTGACGGCAAAACTGTCTTTACGAGTGATGACGCATTGAA
GATGGAATGGGTTCCTGATTGGGTCGCGATTGTCGGATCTGGTTACATTG
GCCTTGAGTTTTCCGACGTCTACACTGCATTGGGCTCTAACGTGACTTTC
GTGGAAGCTATGCCAAACTTAATGCCTGGCTTTGACCCAGAGATTGCTCG
CCTAGCACAAAGGCTTCTTATTAATCCCCGATCAATCGACTATCATACCA
ACGTCTTCGCTTCGAAAGTCACACCAGGTGTCCCGGGACAACGTCCTGTG
ATTATTGATCTTATCGACGCTGGGAGCAAGGAACCAGTTGACAAACTAGA
AGTAGACGCTGCAATGATTGCAACAGGGCGTGCACCATACACAGAAGGCT
TAGGTCTAGAATCAGTGCAAGTGGAAACCCAGAGGGGATTTGTTCCTGTG
GATGAACGTATGCGTGTCCTTGACAAGAACGGATCTGTAATTGAACATCT
GTATGCCATTGGTGACGTCAACGGGAAGATGATGCTTGCCCATGCAGCAT
CTGCCCAAGGCATCAGCGCAGTTGAAAACATTGTTGGTAAAGAACACAAG
GTGGACCATAATGCGGTGCCAGCGGCTTGCTTCACGCATCCGGAGATATC
GATGGTTGGGTTGACAGAGCCAGCGGCGAAAGAAAAAGCGTCGTCGGAAG
GTTTCGATTTGGGGAAATCAGTTGGGCACTTCCGCGCCAACTCAAAAGCC
TTGGCTGAGGGCGAAGGAGATGGTATTGCAAAGGTGTTGTTCAACAAGAG
CAATGGAAAAATATTAGGTGTCCATATAATTGGATTACATGCTGCGGACT
TGATTCAGGAATGTTCAAACGCTGTGGCGCGAGGTACGACAGTCGATGAA
CTTGCCTTTTGCGTACATACCCATCCGACACTTAGTGAAGTTGTGGATGA
AGCTATCAAGGGAGCAGTTGGAATGGCTGCGCACTAA
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protein sequence of Ggra2608.t1

>Ggra2608.t1 ID=Ggra2608.t1|Name=Ggra2608.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=529bp
MAFIAAVSPSSWAHRPQHSFICQRSSFIRTTVDRTANLKLRPLASKGTPR
ASFDYDLAIVGAGVGGHGAALHAVAKGLKVCIFEARDVGGTCVNRGCVPS
KALLAAAGRIREMKDADHLRALGISLDGVSYDRQGVADHANGLASKVKGN
MANSLSALGVTIINARATLTGAQSVKGSDGRTYTAESIILAPGSVPFVPR
GVEIDGKTVFTSDDALKMEWVPDWVAIVGSGYIGLEFSDVYTALGSNVTF
VEAMPNLMPGFDPEIARLAQRLLINPRSIDYHTNVFASKVTPGVPGQRPV
IIDLIDAGSKEPVDKLEVDAAMIATGRAPYTEGLGLESVQVETQRGFVPV
DERMRVLDKNGSVIEHLYAIGDVNGKMMLAHAASAQGISAVENIVGKEHK
VDHNAVPAACFTHPEISMVGLTEPAAKEKASSEGFDLGKSVGHFRANSKA
LAEGEGDGIAKVLFNKSNGKILGVHIIGLHAADLIQECSNAVARGTTVDE
LAFCVHTHPTLSEVVDEAIKGAVGMAAH*
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mRNA from alignment at tig00000005_pilon:941958..943544-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra2608.t1 ID=Ggra2608.t1|Name=Ggra2608.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1587bp|location=Sequence derived from alignment at tig00000005_pilon:941958..943544- (Gracilaria gracilis GNS1m male)
ATGGCGTTTATCGCTGCAGTTTCTCCGTCATCCTGGGCCCATCGCCCGCA
ACATTCGTTCATTTGCCAAAGGTCTTCGTTCATTCGAACTACAGTCGATC
GCACTGCCAATCTGAAGTTGCGGCCTCTAGCATCAAAAGGAACTCCCCGT
GCTTCCTTCGATTATGATCTAGCGATCGTCGGCGCTGGTGTTGGAGGACA
TGGTGCGGCTCTCCATGCCGTTGCAAAGGGTTTGAAAGTCTGTATTTTCG
AGGCGCGTGATGTTGGCGGAACATGTGTCAATAGGGGCTGCGTTCCATCC
AAAGCCCTTCTCGCTGCCGCCGGTCGTATTCGGGAAATGAAGGATGCTGA
CCATTTGCGAGCTCTAGGCATATCTCTTGATGGAGTCTCGTATGACCGAC
AAGGAGTTGCCGATCATGCCAACGGCTTAGCGTCCAAAGTCAAAGGAAAC
ATGGCAAACTCATTAAGTGCACTCGGTGTCACGATCATTAATGCTAGAGC
GACGCTTACGGGTGCTCAAAGTGTGAAAGGATCTGACGGAAGGACATACA
CAGCAGAGAGCATCATTCTAGCACCTGGGAGCGTTCCCTTCGTGCCGAGA
GGCGTCGAAATTGACGGCAAAACTGTCTTTACGAGTGATGACGCATTGAA
GATGGAATGGGTTCCTGATTGGGTCGCGATTGTCGGATCTGGTTACATTG
GCCTTGAGTTTTCCGACGTCTACACTGCATTGGGCTCTAACGTGACTTTC
GTGGAAGCTATGCCAAACTTAATGCCTGGCTTTGACCCAGAGATTGCTCG
CCTAGCACAAAGGCTTCTTATTAATCCCCGATCAATCGACTATCATACCA
ACGTCTTCGCTTCGAAAGTCACACCAGGTGTCCCGGGACAACGTCCTGTG
ATTATTGATCTTATCGACGCTGGGAGCAAGGAACCAGTTGACAAACTAGA
AGTAGACGCTGCAATGATTGCAACAGGGCGTGCACCATACACAGAAGGCT
TAGGTCTAGAATCAGTGCAAGTGGAAACCCAGAGGGGATTTGTTCCTGTG
GATGAACGTATGCGTGTCCTTGACAAGAACGGATCTGTAATTGAACATCT
GTATGCCATTGGTGACGTCAACGGGAAGATGATGCTTGCCCATGCAGCAT
CTGCCCAAGGCATCAGCGCAGTTGAAAACATTGTTGGTAAAGAACACAAG
GTGGACCATAATGCGGTGCCAGCGGCTTGCTTCACGCATCCGGAGATATC
GATGGTTGGGTTGACAGAGCCAGCGGCGAAAGAAAAAGCGTCGTCGGAAG
GTTTCGATTTGGGGAAATCAGTTGGGCACTTCCGCGCCAACTCAAAAGCC
TTGGCTGAGGGCGAAGGAGATGGTATTGCAAAGGTGTTGTTCAACAAGAG
CAATGGAAAAATATTAGGTGTCCATATAATTGGATTACATGCTGCGGACT
TGATTCAGGAATGTTCAAACGCTGTGGCGCGAGGTACGACAGTCGATGAA
CTTGCCTTTTGCGTACATACCCATCCGACACTTAGTGAAGTTGTGGATGA
AGCTATCAAGGGAGCAGTTGGAATGGCTGCGCACTAA
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Coding sequence (CDS) from alignment at tig00000005_pilon:941958..943544-

>Ggra2608.t1 ID=Ggra2608.t1|Name=Ggra2608.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1587bp|location=Sequence derived from alignment at tig00000005_pilon:941958..943544- (Gracilaria gracilis GNS1m male)
ATGGCGTTTATCGCTGCAGTTTCTCCGTCATCCTGGGCCCATCGCCCGCA
ACATTCGTTCATTTGCCAAAGGTCTTCGTTCATTCGAACTACAGTCGATC
GCACTGCCAATCTGAAGTTGCGGCCTCTAGCATCAAAAGGAACTCCCCGT
GCTTCCTTCGATTATGATCTAGCGATCGTCGGCGCTGGTGTTGGAGGACA
TGGTGCGGCTCTCCATGCCGTTGCAAAGGGTTTGAAAGTCTGTATTTTCG
AGGCGCGTGATGTTGGCGGAACATGTGTCAATAGGGGCTGCGTTCCATCC
AAAGCCCTTCTCGCTGCCGCCGGTCGTATTCGGGAAATGAAGGATGCTGA
CCATTTGCGAGCTCTAGGCATATCTCTTGATGGAGTCTCGTATGACCGAC
AAGGAGTTGCCGATCATGCCAACGGCTTAGCGTCCAAAGTCAAAGGAAAC
ATGGCAAACTCATTAAGTGCACTCGGTGTCACGATCATTAATGCTAGAGC
GACGCTTACGGGTGCTCAAAGTGTGAAAGGATCTGACGGAAGGACATACA
CAGCAGAGAGCATCATTCTAGCACCTGGGAGCGTTCCCTTCGTGCCGAGA
GGCGTCGAAATTGACGGCAAAACTGTCTTTACGAGTGATGACGCATTGAA
GATGGAATGGGTTCCTGATTGGGTCGCGATTGTCGGATCTGGTTACATTG
GCCTTGAGTTTTCCGACGTCTACACTGCATTGGGCTCTAACGTGACTTTC
GTGGAAGCTATGCCAAACTTAATGCCTGGCTTTGACCCAGAGATTGCTCG
CCTAGCACAAAGGCTTCTTATTAATCCCCGATCAATCGACTATCATACCA
ACGTCTTCGCTTCGAAAGTCACACCAGGTGTCCCGGGACAACGTCCTGTG
ATTATTGATCTTATCGACGCTGGGAGCAAGGAACCAGTTGACAAACTAGA
AGTAGACGCTGCAATGATTGCAACAGGGCGTGCACCATACACAGAAGGCT
TAGGTCTAGAATCAGTGCAAGTGGAAACCCAGAGGGGATTTGTTCCTGTG
GATGAACGTATGCGTGTCCTTGACAAGAACGGATCTGTAATTGAACATCT
GTATGCCATTGGTGACGTCAACGGGAAGATGATGCTTGCCCATGCAGCAT
CTGCCCAAGGCATCAGCGCAGTTGAAAACATTGTTGGTAAAGAACACAAG
GTGGACCATAATGCGGTGCCAGCGGCTTGCTTCACGCATCCGGAGATATC
GATGGTTGGGTTGACAGAGCCAGCGGCGAAAGAAAAAGCGTCGTCGGAAG
GTTTCGATTTGGGGAAATCAGTTGGGCACTTCCGCGCCAACTCAAAAGCC
TTGGCTGAGGGCGAAGGAGATGGTATTGCAAAGGTGTTGTTCAACAAGAG
CAATGGAAAAATATTAGGTGTCCATATAATTGGATTACATGCTGCGGACT
TGATTCAGGAATGTTCAAACGCTGTGGCGCGAGGTACGACAGTCGATGAA
CTTGCCTTTTGCGTACATACCCATCCGACACTTAGTGAAGTTGTGGATGA
AGCTATCAAGGGAGCAGTTGGAATGGCTGCGCACTAA
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