Ggra2607.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra2607.t1
Unique Name	Ggra2607.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	403

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000005_pilon	contig	tig00000005_pilon:940586..941794 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	296587.XP_002509367.1
Max annot lvl	33090\|Viridiplantae
Evalue	5.17e-09
EggNOG OGs	28I0W@1\|root,2QQBM@2759\|Eukaryota,37QCD@33090\|Viridiplantae

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra2607	Ggra2607	Gracilaria gracilis GNS1m male	gene	tig00000005_pilon 940586..941794 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2607.t1.start1	Ggra2607.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000005_pilon 940586..940588 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2607.t1.CDS1	Ggra2607.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000005_pilon 940586..941794 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2607.t1.exon1	Ggra2607.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000005_pilon 940586..941794 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2607.t1.stop1	Ggra2607.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000005_pilon 941792..941794 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2607.t1	Ggra2607.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000005_pilon 940586..941794 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000005_pilon:940586..941794+
coding sequence from alignment at tig00000005_pilon:940586..941794+

mRNA sequence

>Ggra2607.t1 ID=Ggra2607.t1|Name=Ggra2607.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=403bp
MSGFLGHTNEGHWEPEYYATVNNPSPARTRYCKTAFITCPAFHSFCYQRP
TVTRRRTTSSLLRAPRTFVRLVPRPDGTIHLQTAVTTYETGADRGVLMLY
SILHIADSSYYEAIKSSVDQAVVLFELIAPRTAIEEHSKLKSLKTPVFPP
PALEEAACSLNAKTQLSAMNLMQPDWYIADLPRDCLPVARRKPRELRVSR
LVLNAIAAFLPCPELNAALLHAFSTSTILTAARLLQLLGADLVTKRRLIY
AWRAVASTNTKANARVLDDLGRNRVAWEALDEIREKDVALLYGAWHTGWF
CRRAEADGMKFLTQKWITAMVLPNIPARQSDAILWLLAAVLYCTYAGLDW
ILCVELLVQSVTGSTHFDVSYILLYLLRHIAPYWAFRRWFDEWDAVSRTD
DI*

spliced messenger RNA

>Ggra2607.t1 ID=Ggra2607.t1|Name=Ggra2607.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1209bp|location=Sequence derived from alignment at tig00000005_pilon:940586..941794+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGCGGCTTTCTGGGTCACACCAACGAAGGACACTGGGAACCAGAGTA
TTACGCAACTGTTAATAACCCGAGTCCTGCTCGGACCCGATATTGCAAGA
CGGCATTCATCACATGTCCAGCCTTTCATAGCTTTTGTTACCAGCGTCCG
ACGGTTACTCGAAGGAGAACGACATCTTCGCTCCTAAGAGCACCGAGAAC
ATTTGTTCGCCTCGTTCCAAGACCAGATGGCACGATCCATCTGCAGACCG
CCGTCACAACATACGAGACGGGGGCAGATCGAGGGGTTCTGATGCTTTAT
TCCATACTACATATAGCTGACTCATCGTACTATGAAGCCATTAAGTCATC
TGTGGATCAAGCTGTAGTTCTTTTTGAGCTGATAGCCCCCAGAACAGCTA
TTGAAGAGCACTCCAAGTTGAAGTCTTTAAAAACTCCGGTCTTTCCTCCC
CCCGCTTTGGAAGAAGCTGCTTGCTCTTTGAACGCCAAAACTCAGTTGAG
CGCCATGAACCTAATGCAACCGGACTGGTACATCGCAGATTTACCCAGAG
ATTGTCTTCCAGTGGCAAGACGCAAACCTCGAGAGCTTCGAGTATCCCGA
TTAGTTCTGAATGCTATCGCAGCGTTCCTTCCTTGCCCAGAACTGAATGC
TGCTTTACTACATGCCTTTTCGACAAGCACTATTCTTACCGCTGCCAGGT
TATTGCAACTTCTTGGCGCGGACTTAGTCACGAAAAGGCGGCTCATTTAC
GCTTGGCGGGCAGTTGCGAGCACTAACACAAAAGCGAACGCACGTGTACT
CGATGATTTAGGCAGGAATCGAGTCGCTTGGGAAGCTTTGGATGAAATCC
GTGAGAAGGATGTTGCTCTTTTGTACGGAGCGTGGCATACTGGTTGGTTT
TGTCGTAGAGCTGAAGCTGACGGAATGAAGTTTCTTACCCAGAAGTGGAT
TACGGCAATGGTTCTTCCGAACATTCCTGCCCGCCAGTCAGACGCCATAC
TCTGGTTGCTGGCCGCGGTCCTTTATTGTACTTACGCCGGACTGGACTGG
ATTTTGTGTGTGGAACTTTTAGTTCAGTCGGTTACGGGGAGTACTCATTT
CGACGTTTCATATATCCTTTTATACTTGTTACGCCACATTGCTCCGTACT
GGGCCTTCAGGCGCTGGTTCGATGAGTGGGATGCAGTCTCCAGGACCGAT
GATATATGA

protein sequence of Ggra2607.t1

>Ggra2607.t1 ID=Ggra2607.t1|Name=Ggra2607.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=403bp
MSGFLGHTNEGHWEPEYYATVNNPSPARTRYCKTAFITCPAFHSFCYQRP
TVTRRRTTSSLLRAPRTFVRLVPRPDGTIHLQTAVTTYETGADRGVLMLY
SILHIADSSYYEAIKSSVDQAVVLFELIAPRTAIEEHSKLKSLKTPVFPP
PALEEAACSLNAKTQLSAMNLMQPDWYIADLPRDCLPVARRKPRELRVSR
LVLNAIAAFLPCPELNAALLHAFSTSTILTAARLLQLLGADLVTKRRLIY
AWRAVASTNTKANARVLDDLGRNRVAWEALDEIREKDVALLYGAWHTGWF
CRRAEADGMKFLTQKWITAMVLPNIPARQSDAILWLLAAVLYCTYAGLDW
ILCVELLVQSVTGSTHFDVSYILLYLLRHIAPYWAFRRWFDEWDAVSRTD
DI*

mRNA from alignment at tig00000005_pilon:940586..941794+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra2607.t1 ID=Ggra2607.t1|Name=Ggra2607.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1209bp|location=Sequence derived from alignment at tig00000005_pilon:940586..941794+ (Gracilaria gracilis GNS1m male)
ATGAGCGGCTTTCTGGGTCACACCAACGAAGGACACTGGGAACCAGAGTA
TTACGCAACTGTTAATAACCCGAGTCCTGCTCGGACCCGATATTGCAAGA
CGGCATTCATCACATGTCCAGCCTTTCATAGCTTTTGTTACCAGCGTCCG
ACGGTTACTCGAAGGAGAACGACATCTTCGCTCCTAAGAGCACCGAGAAC
ATTTGTTCGCCTCGTTCCAAGACCAGATGGCACGATCCATCTGCAGACCG
CCGTCACAACATACGAGACGGGGGCAGATCGAGGGGTTCTGATGCTTTAT
TCCATACTACATATAGCTGACTCATCGTACTATGAAGCCATTAAGTCATC
TGTGGATCAAGCTGTAGTTCTTTTTGAGCTGATAGCCCCCAGAACAGCTA
TTGAAGAGCACTCCAAGTTGAAGTCTTTAAAAACTCCGGTCTTTCCTCCC
CCCGCTTTGGAAGAAGCTGCTTGCTCTTTGAACGCCAAAACTCAGTTGAG
CGCCATGAACCTAATGCAACCGGACTGGTACATCGCAGATTTACCCAGAG
ATTGTCTTCCAGTGGCAAGACGCAAACCTCGAGAGCTTCGAGTATCCCGA
TTAGTTCTGAATGCTATCGCAGCGTTCCTTCCTTGCCCAGAACTGAATGC
TGCTTTACTACATGCCTTTTCGACAAGCACTATTCTTACCGCTGCCAGGT
TATTGCAACTTCTTGGCGCGGACTTAGTCACGAAAAGGCGGCTCATTTAC
GCTTGGCGGGCAGTTGCGAGCACTAACACAAAAGCGAACGCACGTGTACT
CGATGATTTAGGCAGGAATCGAGTCGCTTGGGAAGCTTTGGATGAAATCC
GTGAGAAGGATGTTGCTCTTTTGTACGGAGCGTGGCATACTGGTTGGTTT
TGTCGTAGAGCTGAAGCTGACGGAATGAAGTTTCTTACCCAGAAGTGGAT
TACGGCAATGGTTCTTCCGAACATTCCTGCCCGCCAGTCAGACGCCATAC
TCTGGTTGCTGGCCGCGGTCCTTTATTGTACTTACGCCGGACTGGACTGG
ATTTTGTGTGTGGAACTTTTAGTTCAGTCGGTTACGGGGAGTACTCATTT
CGACGTTTCATATATCCTTTTATACTTGTTACGCCACATTGCTCCGTACT
GGGCCTTCAGGCGCTGGTTCGATGAGTGGGATGCAGTCTCCAGGACCGAT
GATATATGA

Coding sequence (CDS) from alignment at tig00000005_pilon:940586..941794+

>Ggra2607.t1 ID=Ggra2607.t1|Name=Ggra2607.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1209bp|location=Sequence derived from alignment at tig00000005_pilon:940586..941794+ (Gracilaria gracilis GNS1m male)
ATGAGCGGCTTTCTGGGTCACACCAACGAAGGACACTGGGAACCAGAGTA
TTACGCAACTGTTAATAACCCGAGTCCTGCTCGGACCCGATATTGCAAGA
CGGCATTCATCACATGTCCAGCCTTTCATAGCTTTTGTTACCAGCGTCCG
ACGGTTACTCGAAGGAGAACGACATCTTCGCTCCTAAGAGCACCGAGAAC
ATTTGTTCGCCTCGTTCCAAGACCAGATGGCACGATCCATCTGCAGACCG
CCGTCACAACATACGAGACGGGGGCAGATCGAGGGGTTCTGATGCTTTAT
TCCATACTACATATAGCTGACTCATCGTACTATGAAGCCATTAAGTCATC
TGTGGATCAAGCTGTAGTTCTTTTTGAGCTGATAGCCCCCAGAACAGCTA
TTGAAGAGCACTCCAAGTTGAAGTCTTTAAAAACTCCGGTCTTTCCTCCC
CCCGCTTTGGAAGAAGCTGCTTGCTCTTTGAACGCCAAAACTCAGTTGAG
CGCCATGAACCTAATGCAACCGGACTGGTACATCGCAGATTTACCCAGAG
ATTGTCTTCCAGTGGCAAGACGCAAACCTCGAGAGCTTCGAGTATCCCGA
TTAGTTCTGAATGCTATCGCAGCGTTCCTTCCTTGCCCAGAACTGAATGC
TGCTTTACTACATGCCTTTTCGACAAGCACTATTCTTACCGCTGCCAGGT
TATTGCAACTTCTTGGCGCGGACTTAGTCACGAAAAGGCGGCTCATTTAC
GCTTGGCGGGCAGTTGCGAGCACTAACACAAAAGCGAACGCACGTGTACT
CGATGATTTAGGCAGGAATCGAGTCGCTTGGGAAGCTTTGGATGAAATCC
GTGAGAAGGATGTTGCTCTTTTGTACGGAGCGTGGCATACTGGTTGGTTT
TGTCGTAGAGCTGAAGCTGACGGAATGAAGTTTCTTACCCAGAAGTGGAT
TACGGCAATGGTTCTTCCGAACATTCCTGCCCGCCAGTCAGACGCCATAC
TCTGGTTGCTGGCCGCGGTCCTTTATTGTACTTACGCCGGACTGGACTGG
ATTTTGTGTGTGGAACTTTTAGTTCAGTCGGTTACGGGGAGTACTCATTT
CGACGTTTCATATATCCTTTTATACTTGTTACGCCACATTGCTCCGTACT
GGGCCTTCAGGCGCTGGTTCGATGAGTGGGATGCAGTCTCCAGGACCGAT
GATATATGA