Ggra2606.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra2606.t1
Unique NameGgra2606.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length327
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000005_piloncontigtig00000005_pilon:935910..936890 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog3885.XP_007157869.1
PFAMs2OG-FeII_Oxy_3
Max annot lvl35493|Streptophyta
KEGG rclassRC00478
KEGG koko:K00472
KEGG ReactionR01252
KEGG Pathwayko00330,ko01100,map00330,map01100
GOsGO:0003674,GO:0003824,GO:0004656,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0006082,GO:0006464,GO:0006520,GO:0006575,GO:0006807,GO:0007275,GO:0008150,GO:0008152,GO:0009653,GO:0009888,GO:0009987,GO:0010015,GO:0010053,GO:0010054,GO:0012505,GO:0016491,GO:0016705,GO:0016706,GO:0018126,GO:0018193,GO:0018208,GO:0018401,GO:0019471,GO:0019511,GO:0019538,GO:0019752,GO:0019798,GO:0021700,GO:0022622,GO:0030154,GO:0031543,GO:0031545,GO:0032501,GO:0032502,GO:0036211,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043436,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0048364,GO:0048468,GO:0048469,GO:0048731,GO:0048764,GO:0048765,GO:0048856,GO:0048869,GO:0051213,GO:0055114,GO:0071695,GO:0071704,GO:0080147,GO:0090558,GO:0090627,GO:0099402,GO:0140096,GO:1901564,GO:1901605,GO:1905392
Evalue2.65e-34
EggNOG OGsKOG1591@1|root,KOG1591@2759|Eukaryota,37KCY@33090|Viridiplantae,3GFH4@35493|Streptophyta,4JKGJ@91835|fabids
EC1.14.11.2
Descriptionprolyl 4-hydroxylase
COG categoryE
BRITEko00000,ko00001,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra2606Ggra2606Gracilaria gracilis GNS1m malegenetig00000005_pilon 935910..936890 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2606.t1.stop1Ggra2606.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000005_pilon 935910..935912 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2606.t1.CDS1Ggra2606.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000005_pilon 935910..936890 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2606.t1.exon1Ggra2606.t1.exon1Gracilaria gracilis GNS1m maleexontig00000005_pilon 935910..936890 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2606.t1.start1Ggra2606.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000005_pilon 936888..936890 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2606.t1Ggra2606.t1Gracilaria gracilis GNS1m malepolypeptidetig00000005_pilon 935910..936890 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra2606.t1 ID=Ggra2606.t1|Name=Ggra2606.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=327bp
MKAANGGYALFLSAVCIVGATVLLVTNPRLGHPYLDPLQPHFDRVRTALN
LPLSRSLPDNVSHGSQGRPLLPDGRISSPAWDRPRYLMETNFSSVAETVP
GAEVNYAWDEPLVVYYDNILTEEEIDLMIEKATPLFKKSMVVGPGGEQVE
DNTRTSDTAWLYYVTDESVADIVQKVTSLAGFSMYHAEGMAINRYQSGQY
FNPHFDFLQPDQLDGMSEFKGCQRASTVLIYLSDVEEGGETVFARDGRMD
GNFRYDKTNPDQLVVEPRRGRILIWYDMHPYTETVDSRTLHGGSPVVKGT
KIAATIFVRNCSRSDYQPVEVSKTEL*
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spliced messenger RNA

>Ggra2606.t1 ID=Ggra2606.t1|Name=Ggra2606.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=981bp|location=Sequence derived from alignment at tig00000005_pilon:935910..936890- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAAGCTGCCAATGGCGGATACGCGCTCTTCTTATCAGCTGTGTGTAT
CGTTGGAGCTACGGTGCTTCTCGTCACAAACCCACGTCTTGGCCATCCAT
ACCTAGATCCGCTGCAACCGCACTTTGATCGCGTCCGAACGGCCTTGAAT
CTTCCGCTGTCCAGATCCCTGCCCGATAACGTTTCTCATGGCTCTCAGGG
ACGCCCGCTGCTTCCAGATGGAAGAATTTCAAGCCCTGCTTGGGATCGCC
CTCGGTATCTCATGGAAACCAACTTTTCATCGGTTGCAGAAACTGTACCG
GGCGCAGAAGTGAACTACGCTTGGGATGAGCCTCTGGTCGTGTATTATGA
TAATATTCTCACAGAAGAAGAGATTGACTTGATGATTGAGAAGGCCACCC
CGCTTTTCAAGAAGAGCATGGTTGTTGGACCAGGGGGGGAGCAAGTGGAA
GATAATACACGGACTTCCGACACAGCATGGCTGTATTATGTGACCGATGA
AAGCGTTGCTGATATCGTTCAAAAAGTAACTTCCTTGGCAGGATTTTCGA
TGTACCATGCTGAAGGTATGGCAATTAATAGGTATCAGAGTGGTCAGTAC
TTTAACCCTCACTTTGACTTTCTTCAACCTGATCAACTTGATGGTATGTC
CGAGTTCAAAGGATGTCAGAGAGCGAGCACCGTACTTATTTACCTCTCTG
ACGTCGAAGAGGGAGGCGAAACTGTTTTTGCACGCGATGGGAGGATGGAT
GGAAATTTCCGCTACGATAAAACCAACCCAGACCAGTTAGTGGTGGAACC
AAGACGTGGACGAATCCTCATTTGGTACGACATGCATCCGTACACCGAAA
CTGTCGATTCACGTACTCTTCATGGAGGAAGTCCTGTTGTCAAAGGCACG
AAGATTGCAGCGACCATTTTCGTGCGGAACTGCAGCCGCAGCGACTATCA
ACCCGTGGAAGTCTCCAAGACGGAGTTGTAA
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protein sequence of Ggra2606.t1

>Ggra2606.t1 ID=Ggra2606.t1|Name=Ggra2606.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=327bp
MKAANGGYALFLSAVCIVGATVLLVTNPRLGHPYLDPLQPHFDRVRTALN
LPLSRSLPDNVSHGSQGRPLLPDGRISSPAWDRPRYLMETNFSSVAETVP
GAEVNYAWDEPLVVYYDNILTEEEIDLMIEKATPLFKKSMVVGPGGEQVE
DNTRTSDTAWLYYVTDESVADIVQKVTSLAGFSMYHAEGMAINRYQSGQY
FNPHFDFLQPDQLDGMSEFKGCQRASTVLIYLSDVEEGGETVFARDGRMD
GNFRYDKTNPDQLVVEPRRGRILIWYDMHPYTETVDSRTLHGGSPVVKGT
KIAATIFVRNCSRSDYQPVEVSKTEL*
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mRNA from alignment at tig00000005_pilon:935910..936890-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra2606.t1 ID=Ggra2606.t1|Name=Ggra2606.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=981bp|location=Sequence derived from alignment at tig00000005_pilon:935910..936890- (Gracilaria gracilis GNS1m male)
ATGAAAGCTGCCAATGGCGGATACGCGCTCTTCTTATCAGCTGTGTGTAT
CGTTGGAGCTACGGTGCTTCTCGTCACAAACCCACGTCTTGGCCATCCAT
ACCTAGATCCGCTGCAACCGCACTTTGATCGCGTCCGAACGGCCTTGAAT
CTTCCGCTGTCCAGATCCCTGCCCGATAACGTTTCTCATGGCTCTCAGGG
ACGCCCGCTGCTTCCAGATGGAAGAATTTCAAGCCCTGCTTGGGATCGCC
CTCGGTATCTCATGGAAACCAACTTTTCATCGGTTGCAGAAACTGTACCG
GGCGCAGAAGTGAACTACGCTTGGGATGAGCCTCTGGTCGTGTATTATGA
TAATATTCTCACAGAAGAAGAGATTGACTTGATGATTGAGAAGGCCACCC
CGCTTTTCAAGAAGAGCATGGTTGTTGGACCAGGGGGGGAGCAAGTGGAA
GATAATACACGGACTTCCGACACAGCATGGCTGTATTATGTGACCGATGA
AAGCGTTGCTGATATCGTTCAAAAAGTAACTTCCTTGGCAGGATTTTCGA
TGTACCATGCTGAAGGTATGGCAATTAATAGGTATCAGAGTGGTCAGTAC
TTTAACCCTCACTTTGACTTTCTTCAACCTGATCAACTTGATGGTATGTC
CGAGTTCAAAGGATGTCAGAGAGCGAGCACCGTACTTATTTACCTCTCTG
ACGTCGAAGAGGGAGGCGAAACTGTTTTTGCACGCGATGGGAGGATGGAT
GGAAATTTCCGCTACGATAAAACCAACCCAGACCAGTTAGTGGTGGAACC
AAGACGTGGACGAATCCTCATTTGGTACGACATGCATCCGTACACCGAAA
CTGTCGATTCACGTACTCTTCATGGAGGAAGTCCTGTTGTCAAAGGCACG
AAGATTGCAGCGACCATTTTCGTGCGGAACTGCAGCCGCAGCGACTATCA
ACCCGTGGAAGTCTCCAAGACGGAGTTGTAA
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Coding sequence (CDS) from alignment at tig00000005_pilon:935910..936890-

>Ggra2606.t1 ID=Ggra2606.t1|Name=Ggra2606.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=981bp|location=Sequence derived from alignment at tig00000005_pilon:935910..936890- (Gracilaria gracilis GNS1m male)
ATGAAAGCTGCCAATGGCGGATACGCGCTCTTCTTATCAGCTGTGTGTAT
CGTTGGAGCTACGGTGCTTCTCGTCACAAACCCACGTCTTGGCCATCCAT
ACCTAGATCCGCTGCAACCGCACTTTGATCGCGTCCGAACGGCCTTGAAT
CTTCCGCTGTCCAGATCCCTGCCCGATAACGTTTCTCATGGCTCTCAGGG
ACGCCCGCTGCTTCCAGATGGAAGAATTTCAAGCCCTGCTTGGGATCGCC
CTCGGTATCTCATGGAAACCAACTTTTCATCGGTTGCAGAAACTGTACCG
GGCGCAGAAGTGAACTACGCTTGGGATGAGCCTCTGGTCGTGTATTATGA
TAATATTCTCACAGAAGAAGAGATTGACTTGATGATTGAGAAGGCCACCC
CGCTTTTCAAGAAGAGCATGGTTGTTGGACCAGGGGGGGAGCAAGTGGAA
GATAATACACGGACTTCCGACACAGCATGGCTGTATTATGTGACCGATGA
AAGCGTTGCTGATATCGTTCAAAAAGTAACTTCCTTGGCAGGATTTTCGA
TGTACCATGCTGAAGGTATGGCAATTAATAGGTATCAGAGTGGTCAGTAC
TTTAACCCTCACTTTGACTTTCTTCAACCTGATCAACTTGATGGTATGTC
CGAGTTCAAAGGATGTCAGAGAGCGAGCACCGTACTTATTTACCTCTCTG
ACGTCGAAGAGGGAGGCGAAACTGTTTTTGCACGCGATGGGAGGATGGAT
GGAAATTTCCGCTACGATAAAACCAACCCAGACCAGTTAGTGGTGGAACC
AAGACGTGGACGAATCCTCATTTGGTACGACATGCATCCGTACACCGAAA
CTGTCGATTCACGTACTCTTCATGGAGGAAGTCCTGTTGTCAAAGGCACG
AAGATTGCAGCGACCATTTTCGTGCGGAACTGCAGCCGCAGCGACTATCA
ACCCGTGGAAGTCTCCAAGACGGAGTTGTAA
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