Ggra2600.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra2600.t1
Unique NameGgra2600.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length211
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000005_piloncontigtig00000005_pilon:903534..904166 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra2600Ggra2600Gracilaria gracilis GNS1m malegenetig00000005_pilon 903534..904166 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2600.t1.stop1Ggra2600.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000005_pilon 903534..903536 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2600.t1.CDS1Ggra2600.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000005_pilon 903534..904166 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2600.t1.exon1Ggra2600.t1.exon1Gracilaria gracilis GNS1m maleexontig00000005_pilon 903534..904166 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2600.t1.start1Ggra2600.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000005_pilon 904164..904166 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2600.t1Ggra2600.t1Gracilaria gracilis GNS1m malepolypeptidetig00000005_pilon 903534..904166 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra2600.t1 ID=Ggra2600.t1|Name=Ggra2600.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=211bp
MIRTSSPLRTRRLRCQRCSEKKFRTTQDLALHVLSKHAKLQLPPTPADDS
RSITLNSPMLPGEAEELDQLLGSALRESFVGNRVNNFKPHVEERSASELK
TTDTTKRPRRQATTESHKKRAKAARSETTTTESCQSPQAPAPRCGAPDRA
FGTEIQPSSRVGEVYNPVPGESIGPCAQDVFLAQCRSGQISLVPTLMKQT
TTLNFANALF*
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spliced messenger RNA

>Ggra2600.t1 ID=Ggra2600.t1|Name=Ggra2600.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=633bp|location=Sequence derived from alignment at tig00000005_pilon:903534..904166- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATACGCACTTCCTCGCCGCTTCGCACAAGACGTCTCCGCTGCCAACG
TTGCTCTGAGAAGAAGTTCCGAACAACGCAAGACCTTGCCTTGCATGTGC
TTTCAAAACATGCCAAGCTTCAGTTACCACCCACCCCTGCCGACGATTCG
CGCTCAATAACTCTCAACTCGCCCATGCTGCCAGGTGAAGCAGAGGAACT
AGACCAACTGCTGGGTAGTGCGTTGCGTGAAAGCTTTGTCGGTAACCGCG
TCAATAACTTCAAGCCACATGTCGAAGAACGCTCAGCGTCTGAACTCAAA
ACAACAGATACCACGAAACGACCGCGAAGACAGGCCACAACGGAAAGCCA
CAAAAAACGCGCGAAGGCTGCACGCTCCGAGACAACTACGACTGAGTCTT
GCCAAAGCCCGCAGGCCCCGGCTCCGCGTTGCGGGGCACCAGACCGTGCC
TTTGGGACAGAAATCCAACCTTCTTCCCGTGTAGGTGAGGTTTATAACCC
GGTCCCTGGTGAAAGTATCGGACCATGCGCTCAAGATGTCTTTCTTGCGC
AATGTCGCTCAGGTCAAATATCTCTTGTTCCTACCCTTATGAAGCAGACA
ACCACTCTAAACTTCGCAAACGCCCTGTTCTAG
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protein sequence of Ggra2600.t1

>Ggra2600.t1 ID=Ggra2600.t1|Name=Ggra2600.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=211bp
MIRTSSPLRTRRLRCQRCSEKKFRTTQDLALHVLSKHAKLQLPPTPADDS
RSITLNSPMLPGEAEELDQLLGSALRESFVGNRVNNFKPHVEERSASELK
TTDTTKRPRRQATTESHKKRAKAARSETTTTESCQSPQAPAPRCGAPDRA
FGTEIQPSSRVGEVYNPVPGESIGPCAQDVFLAQCRSGQISLVPTLMKQT
TTLNFANALF*
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mRNA from alignment at tig00000005_pilon:903534..904166-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra2600.t1 ID=Ggra2600.t1|Name=Ggra2600.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=633bp|location=Sequence derived from alignment at tig00000005_pilon:903534..904166- (Gracilaria gracilis GNS1m male)
ATGATACGCACTTCCTCGCCGCTTCGCACAAGACGTCTCCGCTGCCAACG
TTGCTCTGAGAAGAAGTTCCGAACAACGCAAGACCTTGCCTTGCATGTGC
TTTCAAAACATGCCAAGCTTCAGTTACCACCCACCCCTGCCGACGATTCG
CGCTCAATAACTCTCAACTCGCCCATGCTGCCAGGTGAAGCAGAGGAACT
AGACCAACTGCTGGGTAGTGCGTTGCGTGAAAGCTTTGTCGGTAACCGCG
TCAATAACTTCAAGCCACATGTCGAAGAACGCTCAGCGTCTGAACTCAAA
ACAACAGATACCACGAAACGACCGCGAAGACAGGCCACAACGGAAAGCCA
CAAAAAACGCGCGAAGGCTGCACGCTCCGAGACAACTACGACTGAGTCTT
GCCAAAGCCCGCAGGCCCCGGCTCCGCGTTGCGGGGCACCAGACCGTGCC
TTTGGGACAGAAATCCAACCTTCTTCCCGTGTAGGTGAGGTTTATAACCC
GGTCCCTGGTGAAAGTATCGGACCATGCGCTCAAGATGTCTTTCTTGCGC
AATGTCGCTCAGGTCAAATATCTCTTGTTCCTACCCTTATGAAGCAGACA
ACCACTCTAAACTTCGCAAACGCCCTGTTCTAG
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Coding sequence (CDS) from alignment at tig00000005_pilon:903534..904166-

>Ggra2600.t1 ID=Ggra2600.t1|Name=Ggra2600.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=633bp|location=Sequence derived from alignment at tig00000005_pilon:903534..904166- (Gracilaria gracilis GNS1m male)
ATGATACGCACTTCCTCGCCGCTTCGCACAAGACGTCTCCGCTGCCAACG
TTGCTCTGAGAAGAAGTTCCGAACAACGCAAGACCTTGCCTTGCATGTGC
TTTCAAAACATGCCAAGCTTCAGTTACCACCCACCCCTGCCGACGATTCG
CGCTCAATAACTCTCAACTCGCCCATGCTGCCAGGTGAAGCAGAGGAACT
AGACCAACTGCTGGGTAGTGCGTTGCGTGAAAGCTTTGTCGGTAACCGCG
TCAATAACTTCAAGCCACATGTCGAAGAACGCTCAGCGTCTGAACTCAAA
ACAACAGATACCACGAAACGACCGCGAAGACAGGCCACAACGGAAAGCCA
CAAAAAACGCGCGAAGGCTGCACGCTCCGAGACAACTACGACTGAGTCTT
GCCAAAGCCCGCAGGCCCCGGCTCCGCGTTGCGGGGCACCAGACCGTGCC
TTTGGGACAGAAATCCAACCTTCTTCCCGTGTAGGTGAGGTTTATAACCC
GGTCCCTGGTGAAAGTATCGGACCATGCGCTCAAGATGTCTTTCTTGCGC
AATGTCGCTCAGGTCAAATATCTCTTGTTCCTACCCTTATGAAGCAGACA
ACCACTCTAAACTTCGCAAACGCCCTGTTCTAG
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