Ggra2590.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra2590.t1
Unique NameGgra2590.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length518
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000005_piloncontigtig00000005_pilon:859808..861361 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005704310.1
PFAMsAsp
Max annot lvl2759|Eukaryota
KEGG koko:K01379,ko:K04521,ko:K06002,ko:K07747
KEGG Pathwayko04071,ko04140,ko04142,ko04210,ko04915,ko04974,ko05010,ko05152,map04071,map04140,map04142,map04210,map04915,map04974,map05010,map05152
Evalue9.12e-104
EggNOG OGsKOG1339@1|root,KOG1339@2759|Eukaryota
EC3.4.23.1,3.4.23.45,3.4.23.46,3.4.23.5
Descriptionaspartic-type endopeptidase activity
COG categoryM
BRITEko00000,ko00001,ko01000,ko01002,ko04147
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra2590Ggra2590Gracilaria gracilis GNS1m malegenetig00000005_pilon 859808..861361 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2590.t1.start1Ggra2590.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000005_pilon 859808..859810 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2590.t1.CDS1Ggra2590.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000005_pilon 859808..861361 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2590.t1.exon1Ggra2590.t1.exon1Gracilaria gracilis GNS1m maleexontig00000005_pilon 859808..861361 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2590.t1.stop1Ggra2590.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000005_pilon 861359..861361 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2590.t1Ggra2590.t1Gracilaria gracilis GNS1m malepolypeptidetig00000005_pilon 859808..861361 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra2590.t1 ID=Ggra2590.t1|Name=Ggra2590.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=518bp
MTFILILSARIVPVLGSPQPLGRHQRIRASLNRSVGGFWPISRLEKQAAG
LHRKKDTDDISAPVIIMPMIAVPPRDQIPGSTKGLPYKVRIVHSHRRKRY
GSLSGRLRQSTHALRRQIFGTGGVDDEQADSTVGTNDTVTVDLHGGIVGV
GEYFSIIEIGGTEMRVQVDTGSSTLAVPMKGCRSCSRKSDRRYALASSES
GKAISCDSERCAAGRCSSSCPICSSRGACCSTERPDECGFSLRYADGSTL
SGSLIQDEMVWGTLRCNVTFGGILRNSANFERSEVDGILGMAYKSLACNP
SCFDPPFDSLVKSGQVDDVFSICMTSTGGKLMLGGLDHKVTKSEVEYVDM
THLGTQRYYRVSLGGQLWIGEEKVSMPNFRTAIVDTGTTLIVTSTKTFTA
LKREFQRRFCDVPELCEDESWFQSGMCVSLSDEDMKLLPTLTIEVGGVVR
LSLRPQDYMLRYKRSGKTYRCVGIMGMDGLGGMVVLGNTVMQRYVTVYDR
RRGRIGFAEAADKCGDA*
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spliced messenger RNA

>Ggra2590.t1 ID=Ggra2590.t1|Name=Ggra2590.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1554bp|location=Sequence derived from alignment at tig00000005_pilon:859808..861361+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACTTTCATTTTGATACTATCAGCACGAATAGTCCCCGTTTTGGGTTC
ACCACAGCCTTTGGGACGACATCAGAGGATTCGCGCCTCTCTGAACCGTT
CCGTTGGTGGGTTTTGGCCCATTTCGCGCTTGGAAAAACAGGCAGCCGGA
CTACATAGGAAGAAAGACACGGATGATATTTCAGCGCCAGTGATCATCAT
GCCGATGATTGCTGTGCCGCCAAGAGATCAAATTCCAGGCTCTACAAAAG
GATTGCCGTACAAGGTACGCATTGTACACTCACATAGGCGGAAACGTTAC
GGCAGCCTTAGCGGGCGACTACGTCAATCGACTCATGCGCTCCGGAGACA
GATCTTCGGGACAGGCGGAGTAGACGACGAACAGGCGGACAGCACTGTTG
GTACCAATGATACTGTGACGGTGGACTTGCATGGAGGAATCGTTGGGGTA
GGGGAATACTTTTCAATCATAGAAATTGGCGGCACGGAAATGAGAGTTCA
GGTGGATACGGGGTCGAGCACATTAGCAGTACCGATGAAAGGCTGTCGTT
CATGTTCTCGAAAGTCGGATCGAAGATACGCTCTGGCCAGCAGCGAAAGC
GGAAAAGCTATCAGCTGCGATTCGGAACGGTGTGCAGCGGGGCGATGCTC
CAGCTCATGTCCCATCTGTTCGAGTCGCGGAGCTTGTTGCTCAACAGAGC
GACCGGATGAGTGCGGGTTTTCTCTGCGATACGCAGACGGGTCCACTCTG
TCGGGGTCGTTAATCCAAGACGAGATGGTGTGGGGCACGTTACGATGCAA
CGTGACGTTCGGAGGCATTCTGCGCAATTCGGCAAACTTTGAGCGCTCCG
AAGTGGACGGCATTCTAGGCATGGCGTACAAGTCGTTGGCGTGTAACCCG
TCTTGCTTCGATCCTCCGTTTGATTCACTGGTGAAGAGTGGTCAGGTTGA
CGACGTGTTCTCCATCTGCATGACGAGCACAGGTGGAAAGCTGATGCTAG
GCGGGCTGGATCACAAGGTGACCAAGTCGGAAGTGGAGTACGTGGACATG
ACTCACCTCGGGACGCAACGCTACTACAGAGTGTCACTGGGCGGACAGCT
GTGGATTGGGGAGGAGAAGGTGTCGATGCCCAACTTTCGCACGGCGATTG
TAGACACGGGCACAACGCTAATCGTGACGTCGACAAAGACGTTCACGGCG
CTGAAACGCGAATTTCAAAGGCGTTTTTGCGACGTGCCCGAGCTGTGCGA
GGATGAGTCGTGGTTTCAGAGCGGGATGTGCGTGAGCTTGTCCGACGAGG
ACATGAAGCTGCTACCGACTCTGACGATAGAGGTGGGCGGGGTGGTACGA
CTGTCTCTGCGACCGCAGGACTACATGCTGAGATACAAGCGCAGCGGAAA
GACTTACCGGTGCGTGGGCATCATGGGAATGGACGGACTGGGTGGGATGG
TGGTACTGGGCAACACTGTGATGCAGAGGTACGTGACAGTGTACGACCGA
AGACGCGGGCGAATCGGGTTTGCCGAGGCGGCGGACAAGTGTGGTGATGC
ATAG
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protein sequence of Ggra2590.t1

>Ggra2590.t1 ID=Ggra2590.t1|Name=Ggra2590.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=518bp
MTFILILSARIVPVLGSPQPLGRHQRIRASLNRSVGGFWPISRLEKQAAG
LHRKKDTDDISAPVIIMPMIAVPPRDQIPGSTKGLPYKVRIVHSHRRKRY
GSLSGRLRQSTHALRRQIFGTGGVDDEQADSTVGTNDTVTVDLHGGIVGV
GEYFSIIEIGGTEMRVQVDTGSSTLAVPMKGCRSCSRKSDRRYALASSES
GKAISCDSERCAAGRCSSSCPICSSRGACCSTERPDECGFSLRYADGSTL
SGSLIQDEMVWGTLRCNVTFGGILRNSANFERSEVDGILGMAYKSLACNP
SCFDPPFDSLVKSGQVDDVFSICMTSTGGKLMLGGLDHKVTKSEVEYVDM
THLGTQRYYRVSLGGQLWIGEEKVSMPNFRTAIVDTGTTLIVTSTKTFTA
LKREFQRRFCDVPELCEDESWFQSGMCVSLSDEDMKLLPTLTIEVGGVVR
LSLRPQDYMLRYKRSGKTYRCVGIMGMDGLGGMVVLGNTVMQRYVTVYDR
RRGRIGFAEAADKCGDA*
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mRNA from alignment at tig00000005_pilon:859808..861361+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra2590.t1 ID=Ggra2590.t1|Name=Ggra2590.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1554bp|location=Sequence derived from alignment at tig00000005_pilon:859808..861361+ (Gracilaria gracilis GNS1m male)
ATGACTTTCATTTTGATACTATCAGCACGAATAGTCCCCGTTTTGGGTTC
ACCACAGCCTTTGGGACGACATCAGAGGATTCGCGCCTCTCTGAACCGTT
CCGTTGGTGGGTTTTGGCCCATTTCGCGCTTGGAAAAACAGGCAGCCGGA
CTACATAGGAAGAAAGACACGGATGATATTTCAGCGCCAGTGATCATCAT
GCCGATGATTGCTGTGCCGCCAAGAGATCAAATTCCAGGCTCTACAAAAG
GATTGCCGTACAAGGTACGCATTGTACACTCACATAGGCGGAAACGTTAC
GGCAGCCTTAGCGGGCGACTACGTCAATCGACTCATGCGCTCCGGAGACA
GATCTTCGGGACAGGCGGAGTAGACGACGAACAGGCGGACAGCACTGTTG
GTACCAATGATACTGTGACGGTGGACTTGCATGGAGGAATCGTTGGGGTA
GGGGAATACTTTTCAATCATAGAAATTGGCGGCACGGAAATGAGAGTTCA
GGTGGATACGGGGTCGAGCACATTAGCAGTACCGATGAAAGGCTGTCGTT
CATGTTCTCGAAAGTCGGATCGAAGATACGCTCTGGCCAGCAGCGAAAGC
GGAAAAGCTATCAGCTGCGATTCGGAACGGTGTGCAGCGGGGCGATGCTC
CAGCTCATGTCCCATCTGTTCGAGTCGCGGAGCTTGTTGCTCAACAGAGC
GACCGGATGAGTGCGGGTTTTCTCTGCGATACGCAGACGGGTCCACTCTG
TCGGGGTCGTTAATCCAAGACGAGATGGTGTGGGGCACGTTACGATGCAA
CGTGACGTTCGGAGGCATTCTGCGCAATTCGGCAAACTTTGAGCGCTCCG
AAGTGGACGGCATTCTAGGCATGGCGTACAAGTCGTTGGCGTGTAACCCG
TCTTGCTTCGATCCTCCGTTTGATTCACTGGTGAAGAGTGGTCAGGTTGA
CGACGTGTTCTCCATCTGCATGACGAGCACAGGTGGAAAGCTGATGCTAG
GCGGGCTGGATCACAAGGTGACCAAGTCGGAAGTGGAGTACGTGGACATG
ACTCACCTCGGGACGCAACGCTACTACAGAGTGTCACTGGGCGGACAGCT
GTGGATTGGGGAGGAGAAGGTGTCGATGCCCAACTTTCGCACGGCGATTG
TAGACACGGGCACAACGCTAATCGTGACGTCGACAAAGACGTTCACGGCG
CTGAAACGCGAATTTCAAAGGCGTTTTTGCGACGTGCCCGAGCTGTGCGA
GGATGAGTCGTGGTTTCAGAGCGGGATGTGCGTGAGCTTGTCCGACGAGG
ACATGAAGCTGCTACCGACTCTGACGATAGAGGTGGGCGGGGTGGTACGA
CTGTCTCTGCGACCGCAGGACTACATGCTGAGATACAAGCGCAGCGGAAA
GACTTACCGGTGCGTGGGCATCATGGGAATGGACGGACTGGGTGGGATGG
TGGTACTGGGCAACACTGTGATGCAGAGGTACGTGACAGTGTACGACCGA
AGACGCGGGCGAATCGGGTTTGCCGAGGCGGCGGACAAGTGTGGTGATGC
ATAG
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Coding sequence (CDS) from alignment at tig00000005_pilon:859808..861361+

>Ggra2590.t1 ID=Ggra2590.t1|Name=Ggra2590.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1554bp|location=Sequence derived from alignment at tig00000005_pilon:859808..861361+ (Gracilaria gracilis GNS1m male)
ATGACTTTCATTTTGATACTATCAGCACGAATAGTCCCCGTTTTGGGTTC
ACCACAGCCTTTGGGACGACATCAGAGGATTCGCGCCTCTCTGAACCGTT
CCGTTGGTGGGTTTTGGCCCATTTCGCGCTTGGAAAAACAGGCAGCCGGA
CTACATAGGAAGAAAGACACGGATGATATTTCAGCGCCAGTGATCATCAT
GCCGATGATTGCTGTGCCGCCAAGAGATCAAATTCCAGGCTCTACAAAAG
GATTGCCGTACAAGGTACGCATTGTACACTCACATAGGCGGAAACGTTAC
GGCAGCCTTAGCGGGCGACTACGTCAATCGACTCATGCGCTCCGGAGACA
GATCTTCGGGACAGGCGGAGTAGACGACGAACAGGCGGACAGCACTGTTG
GTACCAATGATACTGTGACGGTGGACTTGCATGGAGGAATCGTTGGGGTA
GGGGAATACTTTTCAATCATAGAAATTGGCGGCACGGAAATGAGAGTTCA
GGTGGATACGGGGTCGAGCACATTAGCAGTACCGATGAAAGGCTGTCGTT
CATGTTCTCGAAAGTCGGATCGAAGATACGCTCTGGCCAGCAGCGAAAGC
GGAAAAGCTATCAGCTGCGATTCGGAACGGTGTGCAGCGGGGCGATGCTC
CAGCTCATGTCCCATCTGTTCGAGTCGCGGAGCTTGTTGCTCAACAGAGC
GACCGGATGAGTGCGGGTTTTCTCTGCGATACGCAGACGGGTCCACTCTG
TCGGGGTCGTTAATCCAAGACGAGATGGTGTGGGGCACGTTACGATGCAA
CGTGACGTTCGGAGGCATTCTGCGCAATTCGGCAAACTTTGAGCGCTCCG
AAGTGGACGGCATTCTAGGCATGGCGTACAAGTCGTTGGCGTGTAACCCG
TCTTGCTTCGATCCTCCGTTTGATTCACTGGTGAAGAGTGGTCAGGTTGA
CGACGTGTTCTCCATCTGCATGACGAGCACAGGTGGAAAGCTGATGCTAG
GCGGGCTGGATCACAAGGTGACCAAGTCGGAAGTGGAGTACGTGGACATG
ACTCACCTCGGGACGCAACGCTACTACAGAGTGTCACTGGGCGGACAGCT
GTGGATTGGGGAGGAGAAGGTGTCGATGCCCAACTTTCGCACGGCGATTG
TAGACACGGGCACAACGCTAATCGTGACGTCGACAAAGACGTTCACGGCG
CTGAAACGCGAATTTCAAAGGCGTTTTTGCGACGTGCCCGAGCTGTGCGA
GGATGAGTCGTGGTTTCAGAGCGGGATGTGCGTGAGCTTGTCCGACGAGG
ACATGAAGCTGCTACCGACTCTGACGATAGAGGTGGGCGGGGTGGTACGA
CTGTCTCTGCGACCGCAGGACTACATGCTGAGATACAAGCGCAGCGGAAA
GACTTACCGGTGCGTGGGCATCATGGGAATGGACGGACTGGGTGGGATGG
TGGTACTGGGCAACACTGTGATGCAGAGGTACGTGACAGTGTACGACCGA
AGACGCGGGCGAATCGGGTTTGCCGAGGCGGCGGACAAGTGTGGTGATGC
ATAG
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