Ggra2585.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra2585.t1
Unique Name	Ggra2585.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	513

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000005_pilon	contig	tig00000005_pilon:842764..844302 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	3712.Bo3g153130.1
PFAMs	GRDP-like
Max annot lvl	35493\|Streptophyta
GOs	GO:0006950,GO:0006970,GO:0008150,GO:0009628,GO:0009966,GO:0009987,GO:0010646,GO:0010928,GO:0023051,GO:0033554,GO:0048580,GO:0048583,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051239,GO:0051716,GO:0065007,GO:0071214,GO:0071470,GO:0104004,GO:2000026,GO:2000028,GO:2000241
Evalue	2.09e-23
EggNOG OGs	28JC1@1\|root,2QRQZ@2759\|Eukaryota,37ISR@33090\|Viridiplantae,3GDPC@35493\|Streptophyta,3HPHE@3699\|Brassicales
Description	cellular response to osmotic stress
COG category	S

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra2585	Ggra2585	Gracilaria gracilis GNS1m male	gene	tig00000005_pilon 842764..844302 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2585.t1.stop1	Ggra2585.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000005_pilon 842764..842766 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2585.t1.CDS1	Ggra2585.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000005_pilon 842764..844302 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2585.t1.exon1	Ggra2585.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000005_pilon 842764..844302 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2585.t1.start1	Ggra2585.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000005_pilon 844300..844302 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2585.t1	Ggra2585.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000005_pilon 842764..844302 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000005_pilon:842764..844302-
coding sequence from alignment at tig00000005_pilon:842764..844302-

mRNA sequence

>Ggra2585.t1 ID=Ggra2585.t1|Name=Ggra2585.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=513bp
MDSHILNLELQRMHRNLSHAMMQYLHAARSMTYMVKAVDLTYESMYEGPA
LQRSIWRYEALWLPLLAAISNPPARDNENPIKPRWAQPNFALKVDEIRAK
NFAKGGLWLNRETIVPPLDIAWVWHCHRLNPHAYAEDLARFARDGDADTV
AYMKEKACATTIDTAFKFSDGEDSQSRPTRRLWEIIYPYESYMPKYLLNH
TYAEEEHRKRQHITSYTNEINRSTFRSVLEYDLPRAALLQKSFVYQIVDE
NDPEKCEQYETNGYLMRAFQRYLQFIVLHKSANELLVPMKDINIIWHMHI
SCTTEYENDCNALIGYVVKHDSIAVDDTRRKELEEMEEDGIANGKVRTNL
EDNEQDEIQERRQRGISIVRTKRLWEKVYGGKPRYDILETRYRGQPRGER
GGFKEVFERTNGTSRDISWIETLFFMTMAILIFFLGVTGLLYSFYKTMFT
HGKFLLGLPLSIGIMVAGVYIFLAIPISRPLSSDSRYWLERAYKQTHNPL
PAYLTPTTRKSL*

spliced messenger RNA

>Ggra2585.t1 ID=Ggra2585.t1|Name=Ggra2585.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1539bp|location=Sequence derived from alignment at tig00000005_pilon:842764..844302- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGATTCCCACATCCTTAATCTTGAGCTCCAGCGCATGCACCGCAATTT
GTCACATGCAATGATGCAGTACCTCCACGCTGCGAGGAGCATGACCTACA
TGGTGAAGGCCGTTGACCTCACATATGAATCTATGTACGAGGGACCCGCT
CTGCAGCGTTCCATCTGGCGTTACGAAGCATTGTGGCTCCCTCTTCTGGC
TGCGATATCGAATCCTCCCGCCAGAGACAATGAAAATCCAATCAAACCGC
GCTGGGCTCAACCCAATTTTGCCCTCAAAGTCGACGAAATTCGAGCCAAG
AACTTTGCCAAGGGCGGTCTCTGGCTCAACCGCGAAACAATTGTCCCGCC
TTTGGACATCGCATGGGTCTGGCATTGCCATCGCTTGAATCCTCATGCTT
ACGCCGAGGACCTCGCACGCTTTGCGCGCGACGGCGACGCAGATACTGTC
GCATACATGAAGGAGAAGGCCTGCGCCACAACCATCGACACTGCGTTCAA
GTTCAGCGATGGCGAGGATTCTCAAAGTAGACCAACTCGCCGCCTCTGGG
AAATCATATATCCTTATGAATCTTACATGCCAAAATATCTCCTGAACCAC
ACCTATGCGGAAGAGGAGCACAGGAAACGCCAACATATTACCAGCTATAC
GAATGAAATCAACCGTTCCACATTCCGTTCAGTCCTTGAGTACGACCTCC
CTCGCGCTGCACTTCTTCAGAAGTCATTTGTATATCAGATTGTGGACGAA
AACGACCCTGAGAAATGTGAGCAATATGAGACGAACGGCTACCTTATGCG
CGCGTTTCAACGCTACCTGCAATTCATTGTGTTGCACAAGAGTGCGAACG
AATTACTCGTGCCCATGAAGGATATTAATATTATCTGGCACATGCACATT
TCGTGCACTACCGAGTACGAGAATGACTGCAATGCTCTAATCGGTTATGT
CGTAAAACATGACAGTATCGCCGTTGACGACACGCGAAGGAAAGAGTTGG
AGGAAATGGAAGAAGATGGTATAGCAAACGGAAAAGTTAGGACAAATCTT
GAAGACAATGAACAAGATGAAATTCAAGAACGTCGTCAAAGGGGGATATC
AATTGTTCGAACAAAACGCCTGTGGGAGAAGGTATACGGCGGCAAACCGC
GTTATGACATTTTAGAGACAAGATACAGAGGGCAACCAAGAGGTGAACGA
GGTGGCTTTAAGGAAGTTTTTGAGAGGACAAATGGTACTTCCCGCGACAT
CTCATGGATAGAGACTCTTTTCTTTATGACTATGGCCATACTGATCTTTT
TCCTTGGGGTTACTGGTCTTCTGTACTCATTTTATAAGACTATGTTCACA
CATGGCAAGTTTTTGTTGGGCCTCCCTTTGAGTATTGGAATTATGGTAGC
AGGTGTTTACATTTTCTTAGCAATTCCGATAAGCAGGCCGTTGTCCTCGG
ACTCGCGGTACTGGCTTGAACGTGCTTATAAGCAGACCCACAACCCCCTC
CCTGCGTATCTTACTCCGACCACGAGGAAGTCCCTGTGA

protein sequence of Ggra2585.t1

>Ggra2585.t1 ID=Ggra2585.t1|Name=Ggra2585.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=513bp
MDSHILNLELQRMHRNLSHAMMQYLHAARSMTYMVKAVDLTYESMYEGPA
LQRSIWRYEALWLPLLAAISNPPARDNENPIKPRWAQPNFALKVDEIRAK
NFAKGGLWLNRETIVPPLDIAWVWHCHRLNPHAYAEDLARFARDGDADTV
AYMKEKACATTIDTAFKFSDGEDSQSRPTRRLWEIIYPYESYMPKYLLNH
TYAEEEHRKRQHITSYTNEINRSTFRSVLEYDLPRAALLQKSFVYQIVDE
NDPEKCEQYETNGYLMRAFQRYLQFIVLHKSANELLVPMKDINIIWHMHI
SCTTEYENDCNALIGYVVKHDSIAVDDTRRKELEEMEEDGIANGKVRTNL
EDNEQDEIQERRQRGISIVRTKRLWEKVYGGKPRYDILETRYRGQPRGER
GGFKEVFERTNGTSRDISWIETLFFMTMAILIFFLGVTGLLYSFYKTMFT
HGKFLLGLPLSIGIMVAGVYIFLAIPISRPLSSDSRYWLERAYKQTHNPL
PAYLTPTTRKSL*

mRNA from alignment at tig00000005_pilon:842764..844302-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra2585.t1 ID=Ggra2585.t1|Name=Ggra2585.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1539bp|location=Sequence derived from alignment at tig00000005_pilon:842764..844302- (Gracilaria gracilis GNS1m male)
ATGGATTCCCACATCCTTAATCTTGAGCTCCAGCGCATGCACCGCAATTT
GTCACATGCAATGATGCAGTACCTCCACGCTGCGAGGAGCATGACCTACA
TGGTGAAGGCCGTTGACCTCACATATGAATCTATGTACGAGGGACCCGCT
CTGCAGCGTTCCATCTGGCGTTACGAAGCATTGTGGCTCCCTCTTCTGGC
TGCGATATCGAATCCTCCCGCCAGAGACAATGAAAATCCAATCAAACCGC
GCTGGGCTCAACCCAATTTTGCCCTCAAAGTCGACGAAATTCGAGCCAAG
AACTTTGCCAAGGGCGGTCTCTGGCTCAACCGCGAAACAATTGTCCCGCC
TTTGGACATCGCATGGGTCTGGCATTGCCATCGCTTGAATCCTCATGCTT
ACGCCGAGGACCTCGCACGCTTTGCGCGCGACGGCGACGCAGATACTGTC
GCATACATGAAGGAGAAGGCCTGCGCCACAACCATCGACACTGCGTTCAA
GTTCAGCGATGGCGAGGATTCTCAAAGTAGACCAACTCGCCGCCTCTGGG
AAATCATATATCCTTATGAATCTTACATGCCAAAATATCTCCTGAACCAC
ACCTATGCGGAAGAGGAGCACAGGAAACGCCAACATATTACCAGCTATAC
GAATGAAATCAACCGTTCCACATTCCGTTCAGTCCTTGAGTACGACCTCC
CTCGCGCTGCACTTCTTCAGAAGTCATTTGTATATCAGATTGTGGACGAA
AACGACCCTGAGAAATGTGAGCAATATGAGACGAACGGCTACCTTATGCG
CGCGTTTCAACGCTACCTGCAATTCATTGTGTTGCACAAGAGTGCGAACG
AATTACTCGTGCCCATGAAGGATATTAATATTATCTGGCACATGCACATT
TCGTGCACTACCGAGTACGAGAATGACTGCAATGCTCTAATCGGTTATGT
CGTAAAACATGACAGTATCGCCGTTGACGACACGCGAAGGAAAGAGTTGG
AGGAAATGGAAGAAGATGGTATAGCAAACGGAAAAGTTAGGACAAATCTT
GAAGACAATGAACAAGATGAAATTCAAGAACGTCGTCAAAGGGGGATATC
AATTGTTCGAACAAAACGCCTGTGGGAGAAGGTATACGGCGGCAAACCGC
GTTATGACATTTTAGAGACAAGATACAGAGGGCAACCAAGAGGTGAACGA
GGTGGCTTTAAGGAAGTTTTTGAGAGGACAAATGGTACTTCCCGCGACAT
CTCATGGATAGAGACTCTTTTCTTTATGACTATGGCCATACTGATCTTTT
TCCTTGGGGTTACTGGTCTTCTGTACTCATTTTATAAGACTATGTTCACA
CATGGCAAGTTTTTGTTGGGCCTCCCTTTGAGTATTGGAATTATGGTAGC
AGGTGTTTACATTTTCTTAGCAATTCCGATAAGCAGGCCGTTGTCCTCGG
ACTCGCGGTACTGGCTTGAACGTGCTTATAAGCAGACCCACAACCCCCTC
CCTGCGTATCTTACTCCGACCACGAGGAAGTCCCTGTGA

Coding sequence (CDS) from alignment at tig00000005_pilon:842764..844302-

>Ggra2585.t1 ID=Ggra2585.t1|Name=Ggra2585.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1539bp|location=Sequence derived from alignment at tig00000005_pilon:842764..844302- (Gracilaria gracilis GNS1m male)
ATGGATTCCCACATCCTTAATCTTGAGCTCCAGCGCATGCACCGCAATTT
GTCACATGCAATGATGCAGTACCTCCACGCTGCGAGGAGCATGACCTACA
TGGTGAAGGCCGTTGACCTCACATATGAATCTATGTACGAGGGACCCGCT
CTGCAGCGTTCCATCTGGCGTTACGAAGCATTGTGGCTCCCTCTTCTGGC
TGCGATATCGAATCCTCCCGCCAGAGACAATGAAAATCCAATCAAACCGC
GCTGGGCTCAACCCAATTTTGCCCTCAAAGTCGACGAAATTCGAGCCAAG
AACTTTGCCAAGGGCGGTCTCTGGCTCAACCGCGAAACAATTGTCCCGCC
TTTGGACATCGCATGGGTCTGGCATTGCCATCGCTTGAATCCTCATGCTT
ACGCCGAGGACCTCGCACGCTTTGCGCGCGACGGCGACGCAGATACTGTC
GCATACATGAAGGAGAAGGCCTGCGCCACAACCATCGACACTGCGTTCAA
GTTCAGCGATGGCGAGGATTCTCAAAGTAGACCAACTCGCCGCCTCTGGG
AAATCATATATCCTTATGAATCTTACATGCCAAAATATCTCCTGAACCAC
ACCTATGCGGAAGAGGAGCACAGGAAACGCCAACATATTACCAGCTATAC
GAATGAAATCAACCGTTCCACATTCCGTTCAGTCCTTGAGTACGACCTCC
CTCGCGCTGCACTTCTTCAGAAGTCATTTGTATATCAGATTGTGGACGAA
AACGACCCTGAGAAATGTGAGCAATATGAGACGAACGGCTACCTTATGCG
CGCGTTTCAACGCTACCTGCAATTCATTGTGTTGCACAAGAGTGCGAACG
AATTACTCGTGCCCATGAAGGATATTAATATTATCTGGCACATGCACATT
TCGTGCACTACCGAGTACGAGAATGACTGCAATGCTCTAATCGGTTATGT
CGTAAAACATGACAGTATCGCCGTTGACGACACGCGAAGGAAAGAGTTGG
AGGAAATGGAAGAAGATGGTATAGCAAACGGAAAAGTTAGGACAAATCTT
GAAGACAATGAACAAGATGAAATTCAAGAACGTCGTCAAAGGGGGATATC
AATTGTTCGAACAAAACGCCTGTGGGAGAAGGTATACGGCGGCAAACCGC
GTTATGACATTTTAGAGACAAGATACAGAGGGCAACCAAGAGGTGAACGA
GGTGGCTTTAAGGAAGTTTTTGAGAGGACAAATGGTACTTCCCGCGACAT
CTCATGGATAGAGACTCTTTTCTTTATGACTATGGCCATACTGATCTTTT
TCCTTGGGGTTACTGGTCTTCTGTACTCATTTTATAAGACTATGTTCACA
CATGGCAAGTTTTTGTTGGGCCTCCCTTTGAGTATTGGAATTATGGTAGC
AGGTGTTTACATTTTCTTAGCAATTCCGATAAGCAGGCCGTTGTCCTCGG
ACTCGCGGTACTGGCTTGAACGTGCTTATAAGCAGACCCACAACCCCCTC
CCTGCGTATCTTACTCCGACCACGAGGAAGTCCCTGTGA