Ggra2569.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra2569.t1
Unique NameGgra2569.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length365
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000005_piloncontigtig00000005_pilon:794361..795526 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005704904.1
PFAMsADH_N,ADH_zinc_N
Max annot lvl2759|Eukaryota
Evalue6.12e-158
EggNOG OGsCOG1063@1|root,KOG0024@2759|Eukaryota
DescriptionL-arabinose catabolic process
COG categoryE
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra2569Ggra2569Gracilaria gracilis GNS1m malegenetig00000005_pilon 794361..795526 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2569.t1Ggra2569.t1Gracilaria gracilis GNS1m malepolypeptidetig00000005_pilon 794361..795526 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2569.t1.stop1Ggra2569.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000005_pilon 794361..794363 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2569.t1.CDS1Ggra2569.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000005_pilon 794361..795276 -
Ggra2569.t1.CDS2Ggra2569.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000005_pilon 795348..795526 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2569.t1.exon1Ggra2569.t1.exon1Gracilaria gracilis GNS1m maleexontig00000005_pilon 794361..795276 -
Ggra2569.t1.exon2Ggra2569.t1.exon2Gracilaria gracilis GNS1m maleexontig00000005_pilon 795348..795526 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2569.t1.intron1Ggra2569.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000005_pilon 795277..795347 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2569.t1.start1Ggra2569.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000005_pilon 795524..795526 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra2569.t1 ID=Ggra2569.t1|Name=Ggra2569.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=365bp
MSVRDTSVPETMNGVLCSGIKDYKTKRLDVPTLLPGELLLRVKRCGVCAG
DAKCYAGAPMFWGDETRPAYVQTPVIPGHEFCGEVLVSKRDGVNVGQYVT
AEQVMACQECFYCKKGMRWLCAPHDIFGFHTNVPGGMAQFMKIPSKAIVH
VFPNSLSTSEMVYTEPLSCAVHGVERAEIALGDVAVVSGCGPIGLGMVAA
ARLRGPSRLIAVDLDDKRLEIARECGADVVLNATRENVVQTVRDMSSGHG
CDVYLEAAGAPASVIQGLHCCRKAATMVEFSVFGKATTVDWTIIGDTKEL
VIKGGHCSGDRGYVNAIDMMKRGLLPTERIVSHSYPLDDVVEAIGMVNDG
SKSVKVTIDPQAES*
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spliced messenger RNA

>Ggra2569.t1 ID=Ggra2569.t1|Name=Ggra2569.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1095bp|location=Sequence derived from alignment at tig00000005_pilon:794361..795526- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGCGTTCGCGACACCAGCGTACCCGAGACCATGAATGGCGTGTTGTG
CAGCGGCATCAAGGACTACAAAACCAAACGGCTTGACGTTCCAACGCTGC
TGCCTGGAGAACTTCTTCTTCGGGTCAAACGATGTGGTGTATGTGCTGGT
GATGCTAAATGCTATGCAGGAGCGCCAATGTTCTGGGGGGATGAAACACG
TCCCGCGTACGTACAAACGCCGGTGATCCCGGGGCATGAGTTCTGTGGCG
AGGTACTTGTATCAAAGAGAGACGGTGTTAATGTTGGCCAGTACGTGACC
GCTGAGCAAGTTATGGCTTGCCAAGAATGCTTCTATTGCAAGAAAGGTAT
GCGGTGGTTATGTGCTCCTCATGATATCTTTGGCTTCCATACCAATGTAC
CAGGTGGTATGGCACAGTTTATGAAGATTCCGTCCAAGGCTATTGTTCAC
GTTTTCCCAAACTCGTTAAGCACTTCCGAGATGGTGTATACAGAACCTCT
CAGCTGTGCTGTGCATGGAGTCGAGCGGGCTGAAATTGCCTTGGGAGATG
TGGCTGTCGTTAGTGGATGTGGTCCAATTGGTTTGGGTATGGTGGCTGCA
GCACGTCTCCGTGGTCCTTCTCGTCTCATAGCAGTCGACCTTGACGACAA
ACGTCTCGAAATTGCCCGTGAATGTGGCGCTGATGTCGTGCTTAACGCAA
CGAGAGAAAATGTAGTACAAACTGTGAGGGACATGAGTTCAGGACATGGA
TGTGATGTATACCTAGAAGCAGCTGGTGCTCCCGCCAGTGTGATACAGGG
CTTGCATTGTTGTCGAAAGGCAGCGACAATGGTGGAGTTTTCTGTGTTTG
GCAAGGCTACCACTGTGGACTGGACGATAATAGGAGATACCAAAGAACTG
GTTATCAAAGGTGGCCATTGCTCAGGGGATCGTGGGTATGTAAATGCAAT
TGATATGATGAAAAGGGGTCTGTTGCCCACTGAGCGCATTGTATCCCACT
CGTACCCTCTTGATGACGTCGTTGAAGCGATTGGTATGGTCAATGATGGT
TCCAAATCGGTCAAAGTCACGATAGATCCGCAGGCCGAATCGTAA
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protein sequence of Ggra2569.t1

>Ggra2569.t1 ID=Ggra2569.t1|Name=Ggra2569.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=365bp
MSVRDTSVPETMNGVLCSGIKDYKTKRLDVPTLLPGELLLRVKRCGVCAG
DAKCYAGAPMFWGDETRPAYVQTPVIPGHEFCGEVLVSKRDGVNVGQYVT
AEQVMACQECFYCKKGMRWLCAPHDIFGFHTNVPGGMAQFMKIPSKAIVH
VFPNSLSTSEMVYTEPLSCAVHGVERAEIALGDVAVVSGCGPIGLGMVAA
ARLRGPSRLIAVDLDDKRLEIARECGADVVLNATRENVVQTVRDMSSGHG
CDVYLEAAGAPASVIQGLHCCRKAATMVEFSVFGKATTVDWTIIGDTKEL
VIKGGHCSGDRGYVNAIDMMKRGLLPTERIVSHSYPLDDVVEAIGMVNDG
SKSVKVTIDPQAES*
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mRNA from alignment at tig00000005_pilon:794361..795526-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra2569.t1 ID=Ggra2569.t1|Name=Ggra2569.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1166bp|location=Sequence derived from alignment at tig00000005_pilon:794361..795526- (Gracilaria gracilis GNS1m male)
ATGAGCGTTCGCGACACCAGCGTACCCGAGACCATGAATGGCGTGTTGTG
CAGCGGCATCAAGGACTACAAAACCAAACGGCTTGACGTTCCAACGCTGC
TGCCTGGAGAACTTCTTCTTCGGGTCAAACGATGTGGTGTATGTGCTGGT
GATGCTAAATGCTATGCAGGAGCGCCAATGTAAGTTCGATTATCTTGTCT
AGTATGGAAGTCAGTGTTATTTTGATTCATTTCTCTAACCAATACATCAG
GTTCTGGGGGGATGAAACACGTCCCGCGTACGTACAAACGCCGGTGATCC
CGGGGCATGAGTTCTGTGGCGAGGTACTTGTATCAAAGAGAGACGGTGTT
AATGTTGGCCAGTACGTGACCGCTGAGCAAGTTATGGCTTGCCAAGAATG
CTTCTATTGCAAGAAAGGTATGCGGTGGTTATGTGCTCCTCATGATATCT
TTGGCTTCCATACCAATGTACCAGGTGGTATGGCACAGTTTATGAAGATT
CCGTCCAAGGCTATTGTTCACGTTTTCCCAAACTCGTTAAGCACTTCCGA
GATGGTGTATACAGAACCTCTCAGCTGTGCTGTGCATGGAGTCGAGCGGG
CTGAAATTGCCTTGGGAGATGTGGCTGTCGTTAGTGGATGTGGTCCAATT
GGTTTGGGTATGGTGGCTGCAGCACGTCTCCGTGGTCCTTCTCGTCTCAT
AGCAGTCGACCTTGACGACAAACGTCTCGAAATTGCCCGTGAATGTGGCG
CTGATGTCGTGCTTAACGCAACGAGAGAAAATGTAGTACAAACTGTGAGG
GACATGAGTTCAGGACATGGATGTGATGTATACCTAGAAGCAGCTGGTGC
TCCCGCCAGTGTGATACAGGGCTTGCATTGTTGTCGAAAGGCAGCGACAA
TGGTGGAGTTTTCTGTGTTTGGCAAGGCTACCACTGTGGACTGGACGATA
ATAGGAGATACCAAAGAACTGGTTATCAAAGGTGGCCATTGCTCAGGGGA
TCGTGGGTATGTAAATGCAATTGATATGATGAAAAGGGGTCTGTTGCCCA
CTGAGCGCATTGTATCCCACTCGTACCCTCTTGATGACGTCGTTGAAGCG
ATTGGTATGGTCAATGATGGTTCCAAATCGGTCAAAGTCACGATAGATCC
GCAGGCCGAATCGTAA
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Coding sequence (CDS) from alignment at tig00000005_pilon:794361..795526-

>Ggra2569.t1 ID=Ggra2569.t1|Name=Ggra2569.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1095bp|location=Sequence derived from alignment at tig00000005_pilon:794361..795526- (Gracilaria gracilis GNS1m male)
ATGAGCGTTCGCGACACCAGCGTACCCGAGACCATGAATGGCGTGTTGTG
CAGCGGCATCAAGGACTACAAAACCAAACGGCTTGACGTTCCAACGCTGC
TGCCTGGAGAACTTCTTCTTCGGGTCAAACGATGTGGTGTATGTGCTGGT
GATGCTAAATGCTATGCAGGAGCGCCAATGTTCTGGGGGGATGAAACACG
TCCCGCGTACGTACAAACGCCGGTGATCCCGGGGCATGAGTTCTGTGGCG
AGGTACTTGTATCAAAGAGAGACGGTGTTAATGTTGGCCAGTACGTGACC
GCTGAGCAAGTTATGGCTTGCCAAGAATGCTTCTATTGCAAGAAAGGTAT
GCGGTGGTTATGTGCTCCTCATGATATCTTTGGCTTCCATACCAATGTAC
CAGGTGGTATGGCACAGTTTATGAAGATTCCGTCCAAGGCTATTGTTCAC
GTTTTCCCAAACTCGTTAAGCACTTCCGAGATGGTGTATACAGAACCTCT
CAGCTGTGCTGTGCATGGAGTCGAGCGGGCTGAAATTGCCTTGGGAGATG
TGGCTGTCGTTAGTGGATGTGGTCCAATTGGTTTGGGTATGGTGGCTGCA
GCACGTCTCCGTGGTCCTTCTCGTCTCATAGCAGTCGACCTTGACGACAA
ACGTCTCGAAATTGCCCGTGAATGTGGCGCTGATGTCGTGCTTAACGCAA
CGAGAGAAAATGTAGTACAAACTGTGAGGGACATGAGTTCAGGACATGGA
TGTGATGTATACCTAGAAGCAGCTGGTGCTCCCGCCAGTGTGATACAGGG
CTTGCATTGTTGTCGAAAGGCAGCGACAATGGTGGAGTTTTCTGTGTTTG
GCAAGGCTACCACTGTGGACTGGACGATAATAGGAGATACCAAAGAACTG
GTTATCAAAGGTGGCCATTGCTCAGGGGATCGTGGGTATGTAAATGCAAT
TGATATGATGAAAAGGGGTCTGTTGCCCACTGAGCGCATTGTATCCCACT
CGTACCCTCTTGATGACGTCGTTGAAGCGATTGGTATGGTCAATGATGGT
TCCAAATCGGTCAAAGTCACGATAGATCCGCAGGCCGAATCGTAA
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