Ggra2565.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra2565.t1
Unique Name	Ggra2565.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	541

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000005_pilon	contig	tig00000005_pilon:788669..790291 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005703819.1
PFAMs	Glyco_transf_90
Max annot lvl	2759\|Eukaryota
Evalue	1.32e-47
EggNOG OGs	KOG2458@1\|root,KOG2458@2759\|Eukaryota
Description	glucosyltransferase activity
COG category	S

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra2565	Ggra2565	Gracilaria gracilis GNS1m male	gene	tig00000005_pilon 788669..790291 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2565.t1.start1	Ggra2565.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000005_pilon 788669..788671 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2565.t1.CDS1	Ggra2565.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000005_pilon 788669..790291 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2565.t1.exon1	Ggra2565.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000005_pilon 788669..790291 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2565.t1.stop1	Ggra2565.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000005_pilon 790289..790291 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2565.t1	Ggra2565.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000005_pilon 788669..790291 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000005_pilon:788669..790291+
coding sequence from alignment at tig00000005_pilon:788669..790291+

mRNA sequence

>Ggra2565.t1 ID=Ggra2565.t1|Name=Ggra2565.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=541bp
MQTRSCSVNALEFRELSTSWSAAADSCFISIRRRFRRIPLLSLILLTVCA
IAVYTAEYPRPRAKRPMPALNTRIPSSPSPHPPTPTAIDQNKYDPREPQA
TTMAVHESERPNVHAHARNVSIGTVSVSRNLPPSNSSVRKAYARLASSYL
SPFKSRGKITNSSYMESYFGSEGQGSGCFLLQVKNGSMFLHDRLGVLSKM
APHRALRLREALRWIESSVSRGIVDNFEMVISTTDGVATTCKNHTYRMPA
PGPSRPIFGAITCNISHNIPFPLMLSDVLRRGVPDKFWETRSQTVDEWDD
AMDRFALLDANAVPWNLKQARAVFRGRIRISAFLSDREGFDSSCDRVGRT
ALWARAHKHEELQRKWAFSKALERRIWPWPISWFLPKTESLLDVKIDGTC
GKRIYVTDNMSMQKQAGYKYIVHVEGNSFWADRLLLLLFGSSAILKQETP
CAMFFEPLLQPKVHYIAVDFWFGNVLRKVKWAREHDEEVLQIVRNARQFA
AEYLSTSGIQTYVDELLKQYVELLANRRIEVRSGGVKVYP*

spliced messenger RNA

>Ggra2565.t1 ID=Ggra2565.t1|Name=Ggra2565.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1623bp|location=Sequence derived from alignment at tig00000005_pilon:788669..790291+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAGACCCGATCGTGCTCCGTCAATGCGTTGGAATTTCGGGAGCTCAG
CACGTCATGGAGCGCGGCTGCAGACAGTTGCTTCATCTCTATACGTCGTC
GATTTCGTCGTATCCCTTTGCTATCTCTCATTCTGTTAACGGTTTGTGCG
ATTGCCGTTTACACAGCTGAGTACCCACGACCAAGAGCTAAGCGCCCGAT
GCCTGCGCTTAATACGCGAATACCTTCGAGCCCTAGTCCGCATCCGCCTA
CTCCCACAGCAATAGATCAAAACAAGTATGATCCTCGCGAACCCCAGGCA
ACTACAATGGCTGTTCATGAGTCGGAGAGACCCAATGTTCACGCTCATGC
TCGTAATGTGAGTATAGGTACTGTTTCTGTGAGCAGAAATCTGCCTCCTT
CGAACTCCTCTGTTCGAAAAGCGTACGCTCGTCTTGCTAGTTCTTACTTG
TCACCCTTTAAAAGCCGCGGTAAGATCACCAATAGCTCGTACATGGAATC
CTACTTTGGCAGCGAAGGCCAAGGCAGTGGCTGTTTCCTTTTGCAAGTGA
AGAACGGCTCTATGTTCCTCCATGACCGACTTGGAGTGCTCTCCAAGATG
GCTCCACATCGCGCTTTGAGATTACGAGAAGCTTTGCGATGGATAGAATC
AAGTGTGTCGCGAGGAATCGTTGACAACTTTGAAATGGTGATTTCCACCA
CGGACGGAGTAGCGACTACTTGTAAGAATCACACATATCGGATGCCCGCT
CCTGGACCTTCGAGACCAATCTTTGGAGCCATCACGTGCAACATTTCCCA
CAACATTCCTTTTCCTTTGATGTTATCGGATGTATTGAGAAGAGGAGTTC
CCGATAAGTTTTGGGAGACTAGATCCCAGACAGTAGATGAATGGGATGAT
GCAATGGATCGTTTTGCGCTGCTTGACGCCAACGCGGTTCCGTGGAACTT
AAAACAAGCGCGTGCGGTATTCAGGGGCCGTATTCGGATTTCTGCGTTCT
TGAGTGACCGGGAGGGCTTTGATTCGTCATGCGATAGAGTTGGAAGAACA
GCACTCTGGGCTCGGGCGCACAAACATGAAGAATTGCAAAGGAAGTGGGC
GTTTTCAAAGGCACTTGAGAGAAGAATCTGGCCATGGCCCATATCATGGT
TTCTTCCAAAAACAGAATCTCTTCTCGATGTTAAGATAGACGGTACCTGT
GGAAAGCGAATCTATGTAACCGATAACATGTCGATGCAAAAGCAAGCTGG
GTACAAGTACATCGTTCATGTGGAAGGTAACTCCTTCTGGGCTGACAGGC
TGTTGTTGCTATTGTTTGGCTCCAGTGCCATTCTGAAACAAGAAACGCCA
TGTGCAATGTTTTTCGAACCGTTGCTCCAGCCGAAAGTACACTACATTGC
GGTGGACTTTTGGTTTGGAAATGTACTGAGAAAGGTCAAATGGGCTCGCG
AACATGATGAAGAAGTGTTGCAGATCGTACGAAATGCTAGACAGTTTGCT
GCAGAATACCTGTCGACTTCAGGTATTCAAACATATGTGGATGAGCTTTT
GAAACAATATGTGGAATTGTTGGCGAACAGACGAATTGAAGTGAGATCAG
GTGGTGTGAAGGTGTATCCTTAG

protein sequence of Ggra2565.t1

>Ggra2565.t1 ID=Ggra2565.t1|Name=Ggra2565.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=541bp
MQTRSCSVNALEFRELSTSWSAAADSCFISIRRRFRRIPLLSLILLTVCA
IAVYTAEYPRPRAKRPMPALNTRIPSSPSPHPPTPTAIDQNKYDPREPQA
TTMAVHESERPNVHAHARNVSIGTVSVSRNLPPSNSSVRKAYARLASSYL
SPFKSRGKITNSSYMESYFGSEGQGSGCFLLQVKNGSMFLHDRLGVLSKM
APHRALRLREALRWIESSVSRGIVDNFEMVISTTDGVATTCKNHTYRMPA
PGPSRPIFGAITCNISHNIPFPLMLSDVLRRGVPDKFWETRSQTVDEWDD
AMDRFALLDANAVPWNLKQARAVFRGRIRISAFLSDREGFDSSCDRVGRT
ALWARAHKHEELQRKWAFSKALERRIWPWPISWFLPKTESLLDVKIDGTC
GKRIYVTDNMSMQKQAGYKYIVHVEGNSFWADRLLLLLFGSSAILKQETP
CAMFFEPLLQPKVHYIAVDFWFGNVLRKVKWAREHDEEVLQIVRNARQFA
AEYLSTSGIQTYVDELLKQYVELLANRRIEVRSGGVKVYP*

mRNA from alignment at tig00000005_pilon:788669..790291+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra2565.t1 ID=Ggra2565.t1|Name=Ggra2565.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1623bp|location=Sequence derived from alignment at tig00000005_pilon:788669..790291+ (Gracilaria gracilis GNS1m male)
ATGCAGACCCGATCGTGCTCCGTCAATGCGTTGGAATTTCGGGAGCTCAG
CACGTCATGGAGCGCGGCTGCAGACAGTTGCTTCATCTCTATACGTCGTC
GATTTCGTCGTATCCCTTTGCTATCTCTCATTCTGTTAACGGTTTGTGCG
ATTGCCGTTTACACAGCTGAGTACCCACGACCAAGAGCTAAGCGCCCGAT
GCCTGCGCTTAATACGCGAATACCTTCGAGCCCTAGTCCGCATCCGCCTA
CTCCCACAGCAATAGATCAAAACAAGTATGATCCTCGCGAACCCCAGGCA
ACTACAATGGCTGTTCATGAGTCGGAGAGACCCAATGTTCACGCTCATGC
TCGTAATGTGAGTATAGGTACTGTTTCTGTGAGCAGAAATCTGCCTCCTT
CGAACTCCTCTGTTCGAAAAGCGTACGCTCGTCTTGCTAGTTCTTACTTG
TCACCCTTTAAAAGCCGCGGTAAGATCACCAATAGCTCGTACATGGAATC
CTACTTTGGCAGCGAAGGCCAAGGCAGTGGCTGTTTCCTTTTGCAAGTGA
AGAACGGCTCTATGTTCCTCCATGACCGACTTGGAGTGCTCTCCAAGATG
GCTCCACATCGCGCTTTGAGATTACGAGAAGCTTTGCGATGGATAGAATC
AAGTGTGTCGCGAGGAATCGTTGACAACTTTGAAATGGTGATTTCCACCA
CGGACGGAGTAGCGACTACTTGTAAGAATCACACATATCGGATGCCCGCT
CCTGGACCTTCGAGACCAATCTTTGGAGCCATCACGTGCAACATTTCCCA
CAACATTCCTTTTCCTTTGATGTTATCGGATGTATTGAGAAGAGGAGTTC
CCGATAAGTTTTGGGAGACTAGATCCCAGACAGTAGATGAATGGGATGAT
GCAATGGATCGTTTTGCGCTGCTTGACGCCAACGCGGTTCCGTGGAACTT
AAAACAAGCGCGTGCGGTATTCAGGGGCCGTATTCGGATTTCTGCGTTCT
TGAGTGACCGGGAGGGCTTTGATTCGTCATGCGATAGAGTTGGAAGAACA
GCACTCTGGGCTCGGGCGCACAAACATGAAGAATTGCAAAGGAAGTGGGC
GTTTTCAAAGGCACTTGAGAGAAGAATCTGGCCATGGCCCATATCATGGT
TTCTTCCAAAAACAGAATCTCTTCTCGATGTTAAGATAGACGGTACCTGT
GGAAAGCGAATCTATGTAACCGATAACATGTCGATGCAAAAGCAAGCTGG
GTACAAGTACATCGTTCATGTGGAAGGTAACTCCTTCTGGGCTGACAGGC
TGTTGTTGCTATTGTTTGGCTCCAGTGCCATTCTGAAACAAGAAACGCCA
TGTGCAATGTTTTTCGAACCGTTGCTCCAGCCGAAAGTACACTACATTGC
GGTGGACTTTTGGTTTGGAAATGTACTGAGAAAGGTCAAATGGGCTCGCG
AACATGATGAAGAAGTGTTGCAGATCGTACGAAATGCTAGACAGTTTGCT
GCAGAATACCTGTCGACTTCAGGTATTCAAACATATGTGGATGAGCTTTT
GAAACAATATGTGGAATTGTTGGCGAACAGACGAATTGAAGTGAGATCAG
GTGGTGTGAAGGTGTATCCTTAG

Coding sequence (CDS) from alignment at tig00000005_pilon:788669..790291+

>Ggra2565.t1 ID=Ggra2565.t1|Name=Ggra2565.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1623bp|location=Sequence derived from alignment at tig00000005_pilon:788669..790291+ (Gracilaria gracilis GNS1m male)
ATGCAGACCCGATCGTGCTCCGTCAATGCGTTGGAATTTCGGGAGCTCAG
CACGTCATGGAGCGCGGCTGCAGACAGTTGCTTCATCTCTATACGTCGTC
GATTTCGTCGTATCCCTTTGCTATCTCTCATTCTGTTAACGGTTTGTGCG
ATTGCCGTTTACACAGCTGAGTACCCACGACCAAGAGCTAAGCGCCCGAT
GCCTGCGCTTAATACGCGAATACCTTCGAGCCCTAGTCCGCATCCGCCTA
CTCCCACAGCAATAGATCAAAACAAGTATGATCCTCGCGAACCCCAGGCA
ACTACAATGGCTGTTCATGAGTCGGAGAGACCCAATGTTCACGCTCATGC
TCGTAATGTGAGTATAGGTACTGTTTCTGTGAGCAGAAATCTGCCTCCTT
CGAACTCCTCTGTTCGAAAAGCGTACGCTCGTCTTGCTAGTTCTTACTTG
TCACCCTTTAAAAGCCGCGGTAAGATCACCAATAGCTCGTACATGGAATC
CTACTTTGGCAGCGAAGGCCAAGGCAGTGGCTGTTTCCTTTTGCAAGTGA
AGAACGGCTCTATGTTCCTCCATGACCGACTTGGAGTGCTCTCCAAGATG
GCTCCACATCGCGCTTTGAGATTACGAGAAGCTTTGCGATGGATAGAATC
AAGTGTGTCGCGAGGAATCGTTGACAACTTTGAAATGGTGATTTCCACCA
CGGACGGAGTAGCGACTACTTGTAAGAATCACACATATCGGATGCCCGCT
CCTGGACCTTCGAGACCAATCTTTGGAGCCATCACGTGCAACATTTCCCA
CAACATTCCTTTTCCTTTGATGTTATCGGATGTATTGAGAAGAGGAGTTC
CCGATAAGTTTTGGGAGACTAGATCCCAGACAGTAGATGAATGGGATGAT
GCAATGGATCGTTTTGCGCTGCTTGACGCCAACGCGGTTCCGTGGAACTT
AAAACAAGCGCGTGCGGTATTCAGGGGCCGTATTCGGATTTCTGCGTTCT
TGAGTGACCGGGAGGGCTTTGATTCGTCATGCGATAGAGTTGGAAGAACA
GCACTCTGGGCTCGGGCGCACAAACATGAAGAATTGCAAAGGAAGTGGGC
GTTTTCAAAGGCACTTGAGAGAAGAATCTGGCCATGGCCCATATCATGGT
TTCTTCCAAAAACAGAATCTCTTCTCGATGTTAAGATAGACGGTACCTGT
GGAAAGCGAATCTATGTAACCGATAACATGTCGATGCAAAAGCAAGCTGG
GTACAAGTACATCGTTCATGTGGAAGGTAACTCCTTCTGGGCTGACAGGC
TGTTGTTGCTATTGTTTGGCTCCAGTGCCATTCTGAAACAAGAAACGCCA
TGTGCAATGTTTTTCGAACCGTTGCTCCAGCCGAAAGTACACTACATTGC
GGTGGACTTTTGGTTTGGAAATGTACTGAGAAAGGTCAAATGGGCTCGCG
AACATGATGAAGAAGTGTTGCAGATCGTACGAAATGCTAGACAGTTTGCT
GCAGAATACCTGTCGACTTCAGGTATTCAAACATATGTGGATGAGCTTTT
GAAACAATATGTGGAATTGTTGGCGAACAGACGAATTGAAGTGAGATCAG
GTGGTGTGAAGGTGTATCCTTAG