Ggra2558.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra2558.t1
Unique NameGgra2558.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length243
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000005_piloncontigtig00000005_pilon:760895..761623 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra2558Ggra2558Gracilaria gracilis GNS1m malegenetig00000005_pilon 760895..761623 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2558.t1.stop1Ggra2558.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000005_pilon 760895..760897 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2558.t1.CDS1Ggra2558.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000005_pilon 760895..761623 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2558.t1.exon1Ggra2558.t1.exon1Gracilaria gracilis GNS1m maleexontig00000005_pilon 760895..761623 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2558.t1.start1Ggra2558.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000005_pilon 761621..761623 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2558.t1Ggra2558.t1Gracilaria gracilis GNS1m malepolypeptidetig00000005_pilon 760895..761623 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra2558.t1 ID=Ggra2558.t1|Name=Ggra2558.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=243bp
MQQVAVADGVSPVPLAFHAASARWARGQASAEDHAAMCALSMHQPLAPAF
DAAKLGFDLTTRLPPAHALALFDDVKNRARAQFHAEAAVQARRALERAVL
HPSSCQFPQALGALPASAGLAAAARLGIGKRFCVAWTVEAAVLEAASVQF
VGAAASAGFIPQFDVEDQSRVLFVARASLPDSALRRLVYQLRRANDENVL
PAGTAALTGIVRLPDDDDDDEQFNCTDLLTFRSFALYPKSRL*
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spliced messenger RNA

>Ggra2558.t1 ID=Ggra2558.t1|Name=Ggra2558.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=729bp|location=Sequence derived from alignment at tig00000005_pilon:760895..761623- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAGCAAGTCGCCGTCGCCGATGGCGTCTCGCCGGTTCCGCTCGCCTT
CCACGCCGCTTCCGCGCGCTGGGCGCGCGGCCAGGCGTCTGCGGAGGACC
ACGCCGCCATGTGCGCACTCTCCATGCACCAGCCGCTCGCGCCTGCCTTC
GATGCTGCCAAGCTGGGCTTTGATTTGACCACACGTCTTCCGCCCGCTCA
TGCACTCGCACTCTTCGATGACGTCAAGAACCGGGCAAGGGCTCAGTTTC
ACGCCGAAGCTGCTGTACAGGCGCGTCGCGCCCTGGAACGTGCTGTGCTG
CACCCCAGCAGCTGTCAATTCCCGCAAGCATTGGGCGCGTTGCCGGCTTC
TGCGGGTCTAGCCGCTGCGGCGCGTCTGGGCATTGGTAAACGGTTTTGCG
TGGCCTGGACCGTTGAGGCTGCTGTGTTGGAGGCTGCGAGTGTCCAGTTT
GTGGGCGCTGCTGCAAGCGCAGGATTCATACCGCAGTTTGACGTGGAAGA
CCAGTCGCGTGTGCTGTTTGTTGCCCGAGCCAGTCTGCCTGATTCCGCGC
TGCGTCGTTTAGTGTACCAGCTACGTCGTGCTAATGATGAAAATGTTTTG
CCGGCGGGTACTGCCGCCCTCACAGGTATTGTTCGTCTGCCAGATGACGA
TGACGATGACGAACAGTTTAACTGCACCGATCTGCTTACTTTTCGGAGCT
TTGCGCTGTACCCTAAGAGCAGGCTCTAA
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protein sequence of Ggra2558.t1

>Ggra2558.t1 ID=Ggra2558.t1|Name=Ggra2558.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=243bp
MQQVAVADGVSPVPLAFHAASARWARGQASAEDHAAMCALSMHQPLAPAF
DAAKLGFDLTTRLPPAHALALFDDVKNRARAQFHAEAAVQARRALERAVL
HPSSCQFPQALGALPASAGLAAAARLGIGKRFCVAWTVEAAVLEAASVQF
VGAAASAGFIPQFDVEDQSRVLFVARASLPDSALRRLVYQLRRANDENVL
PAGTAALTGIVRLPDDDDDDEQFNCTDLLTFRSFALYPKSRL*
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mRNA from alignment at tig00000005_pilon:760895..761623-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra2558.t1 ID=Ggra2558.t1|Name=Ggra2558.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=729bp|location=Sequence derived from alignment at tig00000005_pilon:760895..761623- (Gracilaria gracilis GNS1m male)
ATGCAGCAAGTCGCCGTCGCCGATGGCGTCTCGCCGGTTCCGCTCGCCTT
CCACGCCGCTTCCGCGCGCTGGGCGCGCGGCCAGGCGTCTGCGGAGGACC
ACGCCGCCATGTGCGCACTCTCCATGCACCAGCCGCTCGCGCCTGCCTTC
GATGCTGCCAAGCTGGGCTTTGATTTGACCACACGTCTTCCGCCCGCTCA
TGCACTCGCACTCTTCGATGACGTCAAGAACCGGGCAAGGGCTCAGTTTC
ACGCCGAAGCTGCTGTACAGGCGCGTCGCGCCCTGGAACGTGCTGTGCTG
CACCCCAGCAGCTGTCAATTCCCGCAAGCATTGGGCGCGTTGCCGGCTTC
TGCGGGTCTAGCCGCTGCGGCGCGTCTGGGCATTGGTAAACGGTTTTGCG
TGGCCTGGACCGTTGAGGCTGCTGTGTTGGAGGCTGCGAGTGTCCAGTTT
GTGGGCGCTGCTGCAAGCGCAGGATTCATACCGCAGTTTGACGTGGAAGA
CCAGTCGCGTGTGCTGTTTGTTGCCCGAGCCAGTCTGCCTGATTCCGCGC
TGCGTCGTTTAGTGTACCAGCTACGTCGTGCTAATGATGAAAATGTTTTG
CCGGCGGGTACTGCCGCCCTCACAGGTATTGTTCGTCTGCCAGATGACGA
TGACGATGACGAACAGTTTAACTGCACCGATCTGCTTACTTTTCGGAGCT
TTGCGCTGTACCCTAAGAGCAGGCTCTAA
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Coding sequence (CDS) from alignment at tig00000005_pilon:760895..761623-

>Ggra2558.t1 ID=Ggra2558.t1|Name=Ggra2558.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=729bp|location=Sequence derived from alignment at tig00000005_pilon:760895..761623- (Gracilaria gracilis GNS1m male)
ATGCAGCAAGTCGCCGTCGCCGATGGCGTCTCGCCGGTTCCGCTCGCCTT
CCACGCCGCTTCCGCGCGCTGGGCGCGCGGCCAGGCGTCTGCGGAGGACC
ACGCCGCCATGTGCGCACTCTCCATGCACCAGCCGCTCGCGCCTGCCTTC
GATGCTGCCAAGCTGGGCTTTGATTTGACCACACGTCTTCCGCCCGCTCA
TGCACTCGCACTCTTCGATGACGTCAAGAACCGGGCAAGGGCTCAGTTTC
ACGCCGAAGCTGCTGTACAGGCGCGTCGCGCCCTGGAACGTGCTGTGCTG
CACCCCAGCAGCTGTCAATTCCCGCAAGCATTGGGCGCGTTGCCGGCTTC
TGCGGGTCTAGCCGCTGCGGCGCGTCTGGGCATTGGTAAACGGTTTTGCG
TGGCCTGGACCGTTGAGGCTGCTGTGTTGGAGGCTGCGAGTGTCCAGTTT
GTGGGCGCTGCTGCAAGCGCAGGATTCATACCGCAGTTTGACGTGGAAGA
CCAGTCGCGTGTGCTGTTTGTTGCCCGAGCCAGTCTGCCTGATTCCGCGC
TGCGTCGTTTAGTGTACCAGCTACGTCGTGCTAATGATGAAAATGTTTTG
CCGGCGGGTACTGCCGCCCTCACAGGTATTGTTCGTCTGCCAGATGACGA
TGACGATGACGAACAGTTTAACTGCACCGATCTGCTTACTTTTCGGAGCT
TTGCGCTGTACCCTAAGAGCAGGCTCTAA
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