Ggra2555.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra2555.t1
Unique NameGgra2555.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length341
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000005_piloncontigtig00000005_pilon:750683..751795 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005705471.1
PFAMsAcetyltransf_10
Max annot lvl2759|Eukaryota
Evalue7.34e-28
EggNOG OGs2D0KU@1|root,2SEKQ@2759|Eukaryota
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra2555Ggra2555Gracilaria gracilis GNS1m malegenetig00000005_pilon 750683..751795 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2555.t1Ggra2555.t1Gracilaria gracilis GNS1m malepolypeptidetig00000005_pilon 750683..751795 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2555.t1.stop1Ggra2555.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000005_pilon 750683..750685 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2555.t1.CDS1Ggra2555.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000005_pilon 750683..751036 -
Ggra2555.t1.CDS2Ggra2555.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000005_pilon 751127..751795 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2555.t1.exon1Ggra2555.t1.exon1Gracilaria gracilis GNS1m maleexontig00000005_pilon 750683..751036 -
Ggra2555.t1.exon2Ggra2555.t1.exon2Gracilaria gracilis GNS1m maleexontig00000005_pilon 751127..751795 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2555.t1.intron1Ggra2555.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000005_pilon 751037..751126 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2555.t1.start1Ggra2555.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000005_pilon 751793..751795 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra2555.t1 ID=Ggra2555.t1|Name=Ggra2555.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=341bp
MIAFLCPAIMSANLSANKALSDKGSVMVRPVRSVEELRQVLLIRSRVFVE
EMGIPQDEEYDRNDSWPIPGHITHYLVTIERQPIATCRLRKDQATLKLER
MAVARYARGHGIGRALLSYVERQPVVSNLRGAFYCHAMKDKELFYRNSGW
VTEEGHGVLVEGGFPHVAMVRRRRPVGACNEASLSHVMIRTMDIARARRF
YSLLGFQDVSRFKVNGVRGAWIESPYIEQRIELLEMKTLVTEQQVQNACQ
SGLADYTPGLGHISFDLSRACTSLSRFLCTVQKESVNRFQMSLRVVEKPR
PAVIGSNVLELSFISDADGTLLELTRLVQKHERAEYDAQW*
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spliced messenger RNA

>Ggra2555.t1 ID=Ggra2555.t1|Name=Ggra2555.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1023bp|location=Sequence derived from alignment at tig00000005_pilon:750683..751795- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATAGCTTTCTTATGTCCAGCTATAATGAGCGCGAACCTGAGTGCTAA
TAAAGCTCTTTCGGACAAAGGGTCTGTCATGGTACGACCAGTGCGCTCTG
TAGAAGAGCTTCGGCAAGTCCTTCTAATCCGTAGCAGAGTGTTTGTCGAA
GAAATGGGGATCCCGCAAGATGAAGAATACGATAGAAACGACTCTTGGCC
TATCCCTGGACATATCACGCATTATCTCGTTACCATTGAAAGGCAGCCGA
TTGCGACATGTCGTCTCAGAAAGGATCAAGCGACTTTGAAATTAGAACGC
ATGGCTGTTGCAAGATACGCACGAGGCCATGGCATTGGAAGAGCTTTATT
ATCCTATGTCGAGAGACAGCCGGTAGTTAGCAACCTCCGTGGCGCTTTTT
ACTGCCATGCTATGAAAGACAAAGAGCTCTTCTATCGCAACTCAGGTTGG
GTTACGGAGGAGGGGCACGGCGTACTTGTAGAAGGTGGTTTTCCACATGT
GGCGATGGTAAGACGAAGACGGCCTGTTGGTGCGTGCAATGAAGCTAGTC
TCAGTCACGTAATGATCCGCACAATGGACATAGCGCGGGCGAGACGATTC
TACTCTCTGCTCGGTTTCCAGGATGTTTCGCGATTCAAAGTAAACGGTGT
GCGTGGTGCGTGGATAGAGTCGCCATACATTGAACAGCGCATCGAACTTC
TGGAGATGAAAACTTTGGTCACGGAACAGCAAGTGCAAAACGCATGCCAA
AGCGGCTTGGCGGATTATACACCAGGTCTCGGGCATATATCTTTTGACCT
TTCGCGAGCGTGTACGAGTCTAAGCAGGTTCCTGTGCACGGTTCAAAAAG
AATCTGTGAACAGATTCCAAATGTCTTTGCGAGTGGTGGAGAAGCCAAGA
CCGGCAGTGATCGGAAGCAACGTTTTGGAACTTTCTTTCATTTCAGATGC
GGACGGTACTTTGCTTGAACTAACGAGGCTTGTTCAGAAACATGAAAGAG
CTGAATACGACGCGCAGTGGTAA
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protein sequence of Ggra2555.t1

>Ggra2555.t1 ID=Ggra2555.t1|Name=Ggra2555.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=341bp
MIAFLCPAIMSANLSANKALSDKGSVMVRPVRSVEELRQVLLIRSRVFVE
EMGIPQDEEYDRNDSWPIPGHITHYLVTIERQPIATCRLRKDQATLKLER
MAVARYARGHGIGRALLSYVERQPVVSNLRGAFYCHAMKDKELFYRNSGW
VTEEGHGVLVEGGFPHVAMVRRRRPVGACNEASLSHVMIRTMDIARARRF
YSLLGFQDVSRFKVNGVRGAWIESPYIEQRIELLEMKTLVTEQQVQNACQ
SGLADYTPGLGHISFDLSRACTSLSRFLCTVQKESVNRFQMSLRVVEKPR
PAVIGSNVLELSFISDADGTLLELTRLVQKHERAEYDAQW*
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mRNA from alignment at tig00000005_pilon:750683..751795-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra2555.t1 ID=Ggra2555.t1|Name=Ggra2555.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1113bp|location=Sequence derived from alignment at tig00000005_pilon:750683..751795- (Gracilaria gracilis GNS1m male)
ATGATAGCTTTCTTATGTCCAGCTATAATGAGCGCGAACCTGAGTGCTAA
TAAAGCTCTTTCGGACAAAGGGTCTGTCATGGTACGACCAGTGCGCTCTG
TAGAAGAGCTTCGGCAAGTCCTTCTAATCCGTAGCAGAGTGTTTGTCGAA
GAAATGGGGATCCCGCAAGATGAAGAATACGATAGAAACGACTCTTGGCC
TATCCCTGGACATATCACGCATTATCTCGTTACCATTGAAAGGCAGCCGA
TTGCGACATGTCGTCTCAGAAAGGATCAAGCGACTTTGAAATTAGAACGC
ATGGCTGTTGCAAGATACGCACGAGGCCATGGCATTGGAAGAGCTTTATT
ATCCTATGTCGAGAGACAGCCGGTAGTTAGCAACCTCCGTGGCGCTTTTT
ACTGCCATGCTATGAAAGACAAAGAGCTCTTCTATCGCAACTCAGGTTGG
GTTACGGAGGAGGGGCACGGCGTACTTGTAGAAGGTGGTTTTCCACATGT
GGCGATGGTAAGACGAAGACGGCCTGTTGGTGCGTGCAATGAAGCTAGTC
TCAGTCACGTAATGATCCGCACAATGGACATAGCGCGGGCGAGACGATTC
TACTCTCTGCTCGGTTTCCAGGATGTTTCGCGATTCAAAGTAAACGGTGT
GCGTGGTGCGTGGATAGAGGTGCGTAAATTTACTTCATGTGTTGAACGTG
GTTAAAGAGGCAATCTACTAACAGTGTTTGAGATCGCGTGCTTGAATATT
CTTAAACAGTCGCCATACATTGAACAGCGCATCGAACTTCTGGAGATGAA
AACTTTGGTCACGGAACAGCAAGTGCAAAACGCATGCCAAAGCGGCTTGG
CGGATTATACACCAGGTCTCGGGCATATATCTTTTGACCTTTCGCGAGCG
TGTACGAGTCTAAGCAGGTTCCTGTGCACGGTTCAAAAAGAATCTGTGAA
CAGATTCCAAATGTCTTTGCGAGTGGTGGAGAAGCCAAGACCGGCAGTGA
TCGGAAGCAACGTTTTGGAACTTTCTTTCATTTCAGATGCGGACGGTACT
TTGCTTGAACTAACGAGGCTTGTTCAGAAACATGAAAGAGCTGAATACGA
CGCGCAGTGGTAA
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Coding sequence (CDS) from alignment at tig00000005_pilon:750683..751795-

>Ggra2555.t1 ID=Ggra2555.t1|Name=Ggra2555.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1023bp|location=Sequence derived from alignment at tig00000005_pilon:750683..751795- (Gracilaria gracilis GNS1m male)
ATGATAGCTTTCTTATGTCCAGCTATAATGAGCGCGAACCTGAGTGCTAA
TAAAGCTCTTTCGGACAAAGGGTCTGTCATGGTACGACCAGTGCGCTCTG
TAGAAGAGCTTCGGCAAGTCCTTCTAATCCGTAGCAGAGTGTTTGTCGAA
GAAATGGGGATCCCGCAAGATGAAGAATACGATAGAAACGACTCTTGGCC
TATCCCTGGACATATCACGCATTATCTCGTTACCATTGAAAGGCAGCCGA
TTGCGACATGTCGTCTCAGAAAGGATCAAGCGACTTTGAAATTAGAACGC
ATGGCTGTTGCAAGATACGCACGAGGCCATGGCATTGGAAGAGCTTTATT
ATCCTATGTCGAGAGACAGCCGGTAGTTAGCAACCTCCGTGGCGCTTTTT
ACTGCCATGCTATGAAAGACAAAGAGCTCTTCTATCGCAACTCAGGTTGG
GTTACGGAGGAGGGGCACGGCGTACTTGTAGAAGGTGGTTTTCCACATGT
GGCGATGGTAAGACGAAGACGGCCTGTTGGTGCGTGCAATGAAGCTAGTC
TCAGTCACGTAATGATCCGCACAATGGACATAGCGCGGGCGAGACGATTC
TACTCTCTGCTCGGTTTCCAGGATGTTTCGCGATTCAAAGTAAACGGTGT
GCGTGGTGCGTGGATAGAGTCGCCATACATTGAACAGCGCATCGAACTTC
TGGAGATGAAAACTTTGGTCACGGAACAGCAAGTGCAAAACGCATGCCAA
AGCGGCTTGGCGGATTATACACCAGGTCTCGGGCATATATCTTTTGACCT
TTCGCGAGCGTGTACGAGTCTAAGCAGGTTCCTGTGCACGGTTCAAAAAG
AATCTGTGAACAGATTCCAAATGTCTTTGCGAGTGGTGGAGAAGCCAAGA
CCGGCAGTGATCGGAAGCAACGTTTTGGAACTTTCTTTCATTTCAGATGC
GGACGGTACTTTGCTTGAACTAACGAGGCTTGTTCAGAAACATGAAAGAG
CTGAATACGACGCGCAGTGGTAA
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