Ggra2549.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra2549.t1
Unique NameGgra2549.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length206
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000005_piloncontigtig00000005_pilon:700750..701367 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog10228.TriadP49959
Preferred namePPCDC
PFAMsFlavoprotein
Max annot lvl33208|Metazoa
KEGG rclassRC00822
KEGG koko:K01598
KEGG ReactionR03269
KEGG Pathwayko00770,ko01100,map00770,map01100
KEGG ModuleM00120
GOsGO:0003674,GO:0003824,GO:0004633,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006163,GO:0006164,GO:0006725,GO:0006732,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009108,GO:0009117,GO:0009150,GO:0009152,GO:0009165,GO:0009259,GO:0009260,GO:0009987,GO:0015936,GO:0015937,GO:0016829,GO:0016830,GO:0016831,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0033865,GO:0033866,GO:0033875,GO:0034030,GO:0034032,GO:0034033,GO:0034641,GO:0034654,GO:0042802,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046390,GO:0046483,GO:0051186,GO:0051188,GO:0055086,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576
Evalue5.84e-58
EggNOG OGsCOG0452@1|root,KOG0672@2759|Eukaryota,38DMT@33154|Opisthokonta,3BHHS@33208|Metazoa
EC4.1.1.36
DescriptionPhosphopantothenoylcysteine decarboxylase
COG categoryDP
BRITEko00000,ko00001,ko00002,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra2549Ggra2549Gracilaria gracilis GNS1m malegenetig00000005_pilon 700750..701367 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2549.t1.start1Ggra2549.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000005_pilon 700750..700752 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2549.t1.CDS1Ggra2549.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000005_pilon 700750..701367 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2549.t1.exon1Ggra2549.t1.exon1Gracilaria gracilis GNS1m maleexontig00000005_pilon 700750..701367 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2549.t1.stop1Ggra2549.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000005_pilon 701365..701367 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2549.t1Ggra2549.t1Gracilaria gracilis GNS1m malepolypeptidetig00000005_pilon 700750..701367 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra2549.t1 ID=Ggra2549.t1|Name=Ggra2549.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=206bp
MEPESPHAPDSLAGKNILIGVSGSVAAIRVPLLVDLLLSKGAAVKVISTA
HGSAFIEAERPLTSNVIWLKDEDEWRKWQKLSDPVLHIELRKWADIFLIA
PLSANTLAKLAHGICDNLVTCVARAWPLVGPEAQLFFVAPAMNTHMWDHP
ITSVQLDSIRGFGLQVIEPIRKKLACGDVGKGAMEDPKAIVTVLLSSISL
CRTQQ*
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spliced messenger RNA

>Ggra2549.t1 ID=Ggra2549.t1|Name=Ggra2549.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=618bp|location=Sequence derived from alignment at tig00000005_pilon:700750..701367+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAGCCAGAATCGCCTCACGCTCCAGACAGTCTGGCAGGAAAGAATAT
CTTGATCGGAGTAAGTGGTTCAGTAGCAGCCATTCGAGTTCCGCTGCTTG
TGGATCTCCTGCTATCCAAAGGGGCCGCCGTCAAAGTTATCAGCACTGCG
CATGGTTCGGCCTTCATAGAAGCGGAACGGCCTTTGACATCCAACGTAAT
CTGGCTCAAAGATGAGGATGAGTGGAGAAAATGGCAAAAGCTGTCTGACC
CTGTGTTGCACATCGAGCTGCGAAAATGGGCAGACATTTTTCTTATCGCC
CCACTCTCTGCAAACACTTTGGCCAAGCTAGCGCATGGCATTTGTGATAA
TCTTGTAACATGCGTAGCGAGAGCCTGGCCCTTAGTAGGGCCAGAAGCCC
AGCTTTTCTTCGTTGCTCCAGCCATGAATACTCATATGTGGGACCATCCG
ATAACATCGGTACAGCTAGATAGTATCCGTGGTTTCGGTCTGCAAGTTAT
TGAACCGATTCGAAAAAAACTGGCCTGCGGGGACGTAGGAAAAGGAGCAA
TGGAAGATCCGAAAGCTATTGTTACAGTTCTGCTCAGCAGCATTTCTCTA
TGCCGTACGCAACAATAG
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protein sequence of Ggra2549.t1

>Ggra2549.t1 ID=Ggra2549.t1|Name=Ggra2549.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=206bp
MEPESPHAPDSLAGKNILIGVSGSVAAIRVPLLVDLLLSKGAAVKVISTA
HGSAFIEAERPLTSNVIWLKDEDEWRKWQKLSDPVLHIELRKWADIFLIA
PLSANTLAKLAHGICDNLVTCVARAWPLVGPEAQLFFVAPAMNTHMWDHP
ITSVQLDSIRGFGLQVIEPIRKKLACGDVGKGAMEDPKAIVTVLLSSISL
CRTQQ*
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mRNA from alignment at tig00000005_pilon:700750..701367+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra2549.t1 ID=Ggra2549.t1|Name=Ggra2549.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=618bp|location=Sequence derived from alignment at tig00000005_pilon:700750..701367+ (Gracilaria gracilis GNS1m male)
ATGGAGCCAGAATCGCCTCACGCTCCAGACAGTCTGGCAGGAAAGAATAT
CTTGATCGGAGTAAGTGGTTCAGTAGCAGCCATTCGAGTTCCGCTGCTTG
TGGATCTCCTGCTATCCAAAGGGGCCGCCGTCAAAGTTATCAGCACTGCG
CATGGTTCGGCCTTCATAGAAGCGGAACGGCCTTTGACATCCAACGTAAT
CTGGCTCAAAGATGAGGATGAGTGGAGAAAATGGCAAAAGCTGTCTGACC
CTGTGTTGCACATCGAGCTGCGAAAATGGGCAGACATTTTTCTTATCGCC
CCACTCTCTGCAAACACTTTGGCCAAGCTAGCGCATGGCATTTGTGATAA
TCTTGTAACATGCGTAGCGAGAGCCTGGCCCTTAGTAGGGCCAGAAGCCC
AGCTTTTCTTCGTTGCTCCAGCCATGAATACTCATATGTGGGACCATCCG
ATAACATCGGTACAGCTAGATAGTATCCGTGGTTTCGGTCTGCAAGTTAT
TGAACCGATTCGAAAAAAACTGGCCTGCGGGGACGTAGGAAAAGGAGCAA
TGGAAGATCCGAAAGCTATTGTTACAGTTCTGCTCAGCAGCATTTCTCTA
TGCCGTACGCAACAATAG
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Coding sequence (CDS) from alignment at tig00000005_pilon:700750..701367+

>Ggra2549.t1 ID=Ggra2549.t1|Name=Ggra2549.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=618bp|location=Sequence derived from alignment at tig00000005_pilon:700750..701367+ (Gracilaria gracilis GNS1m male)
ATGGAGCCAGAATCGCCTCACGCTCCAGACAGTCTGGCAGGAAAGAATAT
CTTGATCGGAGTAAGTGGTTCAGTAGCAGCCATTCGAGTTCCGCTGCTTG
TGGATCTCCTGCTATCCAAAGGGGCCGCCGTCAAAGTTATCAGCACTGCG
CATGGTTCGGCCTTCATAGAAGCGGAACGGCCTTTGACATCCAACGTAAT
CTGGCTCAAAGATGAGGATGAGTGGAGAAAATGGCAAAAGCTGTCTGACC
CTGTGTTGCACATCGAGCTGCGAAAATGGGCAGACATTTTTCTTATCGCC
CCACTCTCTGCAAACACTTTGGCCAAGCTAGCGCATGGCATTTGTGATAA
TCTTGTAACATGCGTAGCGAGAGCCTGGCCCTTAGTAGGGCCAGAAGCCC
AGCTTTTCTTCGTTGCTCCAGCCATGAATACTCATATGTGGGACCATCCG
ATAACATCGGTACAGCTAGATAGTATCCGTGGTTTCGGTCTGCAAGTTAT
TGAACCGATTCGAAAAAAACTGGCCTGCGGGGACGTAGGAAAAGGAGCAA
TGGAAGATCCGAAAGCTATTGTTACAGTTCTGCTCAGCAGCATTTCTCTA
TGCCGTACGCAACAATAG
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