Ggra2546.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra2546.t1
Unique NameGgra2546.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length572
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000005_piloncontigtig00000005_pilon:685858..687906 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog72019.SARC_03312T0
Preferred nameDUR3
PFAMsSSF
Max annot lvl33154|Opisthokonta
KEGG koko:K20989
KEGG TC2.A.21.6
GOsGO:0003674,GO:0005215,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005886,GO:0005887,GO:0006807,GO:0006810,GO:0006811,GO:0006812,GO:0008150,GO:0008152,GO:0008324,GO:0008519,GO:0009056,GO:0009987,GO:0012505,GO:0015075,GO:0015101,GO:0015203,GO:0015204,GO:0015291,GO:0015293,GO:0015489,GO:0015606,GO:0015695,GO:0015696,GO:0015840,GO:0015846,GO:0015847,GO:0015848,GO:0016020,GO:0016021,GO:0019627,GO:0019755,GO:0022804,GO:0022857,GO:0031224,GO:0031226,GO:0034220,GO:0034641,GO:0042886,GO:0042887,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043419,GO:0043603,GO:0043605,GO:0044237,GO:0044248,GO:0044270,GO:0044281,GO:0044282,GO:0044424,GO:0044425,GO:0044444,GO:0044459,GO:0044464,GO:0051179,GO:0051234,GO:0055085,GO:0071702,GO:0071704,GO:0071705,GO:0071918,GO:0071941,GO:0071944,GO:0072488,GO:0098655,GO:1901564,GO:1901565,GO:1901575,GO:1902047,GO:1903711
Evalue5.7e-222
EggNOG OGsCOG0591@1|root,KOG2348@2759|Eukaryota,38H6Q@33154|Opisthokonta
Descriptionputrescine transmembrane transporter activity
COG categoryE
BRITEko00000,ko02000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra2546Ggra2546Gracilaria gracilis GNS1m malegenetig00000005_pilon 685858..687906 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2546.t1Ggra2546.t1Gracilaria gracilis GNS1m malepolypeptidetig00000005_pilon 685858..687906 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2546.t1.stop1Ggra2546.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000005_pilon 685858..685860 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2546.t1.CDS1Ggra2546.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000005_pilon 685858..686004 -
Ggra2546.t1.CDS2Ggra2546.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000005_pilon 686338..687906 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2546.t1.exon1Ggra2546.t1.exon1Gracilaria gracilis GNS1m maleexontig00000005_pilon 685858..686004 -
Ggra2546.t1.exon2Ggra2546.t1.exon2Gracilaria gracilis GNS1m maleexontig00000005_pilon 686338..687906 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2546.t1.intron1Ggra2546.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000005_pilon 686005..686337 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2546.t1.start1Ggra2546.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000005_pilon 687904..687906 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra2546.t1 ID=Ggra2546.t1|Name=Ggra2546.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=572bp
MATTVVATVNPFNCPPNTQLLNYFGFEQYRCQNEFFVKDILPLWSGWVVV
LAFGLVFGLFTVGLVYLEQFLTGVRMNSEFFNTAGRTIKTGLTASVLVSQ
WTWAATLLQSSTVANKYGISGPFWYASGATIQILLFSMLAVLVKRRAPTC
HTFLEIVRARWGTPAHLVFVVFAFTTNIIVTSMLILGGSSTVSALTGMNT
DLASFLIPLGVILYTLAGGLKATFIASYFNTAVILISLCIFIFQVYVTND
DLGSPSTVWERLNSVVKIAPVEKNYNGSYLTMLSLDGLFFGLTNIVGNFG
TVFVDQSYWQSAIAATPSASWKGYLLGGLCWFSIPFSLATSMGLASVALS
LPLTGDEVDDGLVPPAVASHLLGSGGAALILIMLFMAVTSTGAAEQIAVS
SLVSYDVYRTYINPNATGRQIIIVSRVAILMFGLLMGVLGIALNAIGVSL
NFLYLFMGVMIGSAVIPVAFSISWSKCSDVAAISGALGGLALGFTTWITY
GAVDGGVSIDNLGRPPIMLAGNLSFNTVVEAMRSQGEGGKNMDEESMMME
TGKSVSDTVAESEMTARSLEM*
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spliced messenger RNA

>Ggra2546.t1 ID=Ggra2546.t1|Name=Ggra2546.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1716bp|location=Sequence derived from alignment at tig00000005_pilon:685858..687906- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCACCACTGTCGTTGCTACCGTTAATCCGTTCAACTGCCCGCCCAA
CACCCAGCTGCTCAACTACTTTGGCTTTGAGCAGTACCGATGCCAGAACG
AGTTCTTCGTCAAAGACATCCTGCCGCTATGGTCCGGCTGGGTCGTCGTG
CTCGCCTTCGGTCTCGTCTTCGGCCTCTTCACCGTCGGCTTGGTGTACCT
TGAGCAGTTCCTCACCGGAGTGCGTATGAACTCCGAGTTCTTCAATACCG
CCGGCCGCACCATCAAGACCGGCCTCACCGCCTCCGTGCTCGTGTCGCAG
TGGACCTGGGCCGCCACCTTGTTGCAGTCCTCAACCGTCGCCAACAAGTA
TGGAATCTCTGGCCCGTTTTGGTACGCGTCTGGAGCCACCATTCAGATCC
TGCTCTTCTCCATGCTGGCCGTGTTGGTCAAACGCCGTGCGCCTACGTGC
CACACCTTTCTGGAGATTGTGCGCGCCCGCTGGGGCACACCGGCCCATCT
GGTGTTCGTCGTGTTCGCCTTCACCACCAATATTATCGTCACCTCTATGC
TCATTCTGGGTGGCTCCTCCACCGTCTCGGCGCTCACAGGCATGAATACC
GACTTGGCTTCGTTCCTCATCCCGCTTGGTGTCATTCTGTACACCTTGGC
TGGCGGCCTCAAGGCTACCTTCATCGCCTCGTACTTCAACACCGCTGTTA
TTCTCATCTCGTTGTGTATCTTCATCTTCCAGGTGTACGTCACCAACGAC
GATTTGGGCTCTCCTTCAACCGTGTGGGAAAGGCTCAACTCCGTTGTGAA
AATTGCCCCCGTGGAAAAGAACTACAACGGCTCGTACCTCACCATGCTTT
CGCTGGATGGCTTGTTCTTCGGTTTGACCAATATCGTCGGCAACTTTGGA
ACCGTGTTTGTAGATCAGTCGTACTGGCAGTCGGCCATTGCCGCCACGCC
CTCCGCCTCATGGAAGGGCTACTTGCTCGGTGGTCTGTGCTGGTTCTCCA
TTCCGTTCTCGTTGGCCACCTCCATGGGACTGGCGTCGGTGGCTCTTTCA
TTGCCACTGACCGGCGACGAGGTGGACGACGGTTTGGTGCCGCCCGCCGT
CGCGTCGCATCTTCTGGGCTCCGGTGGCGCCGCGCTGATCCTCATCATGC
TGTTCATGGCTGTGACTTCTACTGGTGCGGCCGAACAGATCGCGGTGTCG
TCGCTGGTGTCTTACGACGTGTACCGTACGTACATCAACCCCAACGCCAC
CGGGCGTCAGATCATCATTGTGTCGCGTGTGGCCATCTTGATGTTCGGGC
TTCTGATGGGTGTGCTCGGTATCGCGCTGAACGCTATTGGCGTGAGCCTC
AACTTTCTGTACCTGTTCATGGGCGTGATGATTGGATCGGCGGTGATCCC
GGTTGCGTTCTCCATCTCATGGAGCAAGTGCTCCGACGTGGCTGCGATCA
GTGGGGCGCTCGGCGGTCTTGCGCTCGGATTCACGACGTGGATCACGTAC
GGTGCGGTGGACGGCGGTGTGAGCATCGACAACCTGGGGCGCCCGCCGAT
CATGCTCGCCGGCAACCTGAGCTTCAATACGGTGGTGGAGGCGATGAGGA
GCCAAGGGGAGGGCGGTAAGAACATGGACGAGGAGTCGATGATGATGGAG
ACGGGCAAGTCGGTAAGCGACACGGTGGCTGAGTCGGAGATGACGGCACG
TAGCCTGGAAATGTAA
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protein sequence of Ggra2546.t1

>Ggra2546.t1 ID=Ggra2546.t1|Name=Ggra2546.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=572bp
MATTVVATVNPFNCPPNTQLLNYFGFEQYRCQNEFFVKDILPLWSGWVVV
LAFGLVFGLFTVGLVYLEQFLTGVRMNSEFFNTAGRTIKTGLTASVLVSQ
WTWAATLLQSSTVANKYGISGPFWYASGATIQILLFSMLAVLVKRRAPTC
HTFLEIVRARWGTPAHLVFVVFAFTTNIIVTSMLILGGSSTVSALTGMNT
DLASFLIPLGVILYTLAGGLKATFIASYFNTAVILISLCIFIFQVYVTND
DLGSPSTVWERLNSVVKIAPVEKNYNGSYLTMLSLDGLFFGLTNIVGNFG
TVFVDQSYWQSAIAATPSASWKGYLLGGLCWFSIPFSLATSMGLASVALS
LPLTGDEVDDGLVPPAVASHLLGSGGAALILIMLFMAVTSTGAAEQIAVS
SLVSYDVYRTYINPNATGRQIIIVSRVAILMFGLLMGVLGIALNAIGVSL
NFLYLFMGVMIGSAVIPVAFSISWSKCSDVAAISGALGGLALGFTTWITY
GAVDGGVSIDNLGRPPIMLAGNLSFNTVVEAMRSQGEGGKNMDEESMMME
TGKSVSDTVAESEMTARSLEM*
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mRNA from alignment at tig00000005_pilon:685858..687906-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra2546.t1 ID=Ggra2546.t1|Name=Ggra2546.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2049bp|location=Sequence derived from alignment at tig00000005_pilon:685858..687906- (Gracilaria gracilis GNS1m male)
ATGGCCACCACTGTCGTTGCTACCGTTAATCCGTTCAACTGCCCGCCCAA
CACCCAGCTGCTCAACTACTTTGGCTTTGAGCAGTACCGATGCCAGAACG
AGTTCTTCGTCAAAGACATCCTGCCGCTATGGTCCGGCTGGGTCGTCGTG
CTCGCCTTCGGTCTCGTCTTCGGCCTCTTCACCGTCGGCTTGGTGTACCT
TGAGCAGTTCCTCACCGGAGTGCGTATGAACTCCGAGTTCTTCAATACCG
CCGGCCGCACCATCAAGACCGGCCTCACCGCCTCCGTGCTCGTGTCGCAG
TGGACCTGGGCCGCCACCTTGTTGCAGTCCTCAACCGTCGCCAACAAGTA
TGGAATCTCTGGCCCGTTTTGGTACGCGTCTGGAGCCACCATTCAGATCC
TGCTCTTCTCCATGCTGGCCGTGTTGGTCAAACGCCGTGCGCCTACGTGC
CACACCTTTCTGGAGATTGTGCGCGCCCGCTGGGGCACACCGGCCCATCT
GGTGTTCGTCGTGTTCGCCTTCACCACCAATATTATCGTCACCTCTATGC
TCATTCTGGGTGGCTCCTCCACCGTCTCGGCGCTCACAGGCATGAATACC
GACTTGGCTTCGTTCCTCATCCCGCTTGGTGTCATTCTGTACACCTTGGC
TGGCGGCCTCAAGGCTACCTTCATCGCCTCGTACTTCAACACCGCTGTTA
TTCTCATCTCGTTGTGTATCTTCATCTTCCAGGTGTACGTCACCAACGAC
GATTTGGGCTCTCCTTCAACCGTGTGGGAAAGGCTCAACTCCGTTGTGAA
AATTGCCCCCGTGGAAAAGAACTACAACGGCTCGTACCTCACCATGCTTT
CGCTGGATGGCTTGTTCTTCGGTTTGACCAATATCGTCGGCAACTTTGGA
ACCGTGTTTGTAGATCAGTCGTACTGGCAGTCGGCCATTGCCGCCACGCC
CTCCGCCTCATGGAAGGGCTACTTGCTCGGTGGTCTGTGCTGGTTCTCCA
TTCCGTTCTCGTTGGCCACCTCCATGGGACTGGCGTCGGTGGCTCTTTCA
TTGCCACTGACCGGCGACGAGGTGGACGACGGTTTGGTGCCGCCCGCCGT
CGCGTCGCATCTTCTGGGCTCCGGTGGCGCCGCGCTGATCCTCATCATGC
TGTTCATGGCTGTGACTTCTACTGGTGCGGCCGAACAGATCGCGGTGTCG
TCGCTGGTGTCTTACGACGTGTACCGTACGTACATCAACCCCAACGCCAC
CGGGCGTCAGATCATCATTGTGTCGCGTGTGGCCATCTTGATGTTCGGGC
TTCTGATGGGTGTGCTCGGTATCGCGCTGAACGCTATTGGCGTGAGCCTC
AACTTTCTGTACCTGTTCATGGGCGTGATGATTGGATCGGCGGTGATCCC
GGTTGCGTTCTCCATCTCATGGAGCAAGTGCTCCGACGTGGCTGCGATCA
GTGGGGCGCTCGGCGGTCTTGCGCTCGGATTCACGACGTGGATCACGTAC
GGTGCGGTGGACGGCGGTGTGAGCATCGACAACCTGGGGCGCCCGCCGAT
CATGCTCGCCGGCAACCTGGTATCGATTCTGAGTTCAGGGGCGATTTGCA
TCGCAGTGACGATGCTGGTGAAGAAGGACAACTGCGATTGGTCCAACACA
AAGGCGATTGCGCTGGTGGAGGAGGACAAGAACGCTGAACTGAGCGAGGA
GACGGAGGCGGAACTGGCTCGGGCAAGCAAGCTGATCATGGCGTGGGGTC
TGGGATTGGCGCTGTTGCTGGTGGTGGCGTGGCCGCTGCTGACGCTGCCG
GCGCGCGCGTTCTCCAAGGGGTACTTTACGTTCTGGGTGATTATTTCGTT
CATCTGGGGGCTGGTGGCTACGGCTACTATGGTGATTCTTCCGGTGTACG
AGAGCTTCAATACGGTGGTGGAGGCGATGAGGAGCCAAGGGGAGGGCGGT
AAGAACATGGACGAGGAGTCGATGATGATGGAGACGGGCAAGTCGGTAAG
CGACACGGTGGCTGAGTCGGAGATGACGGCACGTAGCCTGGAAATGTAA
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Coding sequence (CDS) from alignment at tig00000005_pilon:685858..687906-

>Ggra2546.t1 ID=Ggra2546.t1|Name=Ggra2546.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1716bp|location=Sequence derived from alignment at tig00000005_pilon:685858..687906- (Gracilaria gracilis GNS1m male)
ATGGCCACCACTGTCGTTGCTACCGTTAATCCGTTCAACTGCCCGCCCAA
CACCCAGCTGCTCAACTACTTTGGCTTTGAGCAGTACCGATGCCAGAACG
AGTTCTTCGTCAAAGACATCCTGCCGCTATGGTCCGGCTGGGTCGTCGTG
CTCGCCTTCGGTCTCGTCTTCGGCCTCTTCACCGTCGGCTTGGTGTACCT
TGAGCAGTTCCTCACCGGAGTGCGTATGAACTCCGAGTTCTTCAATACCG
CCGGCCGCACCATCAAGACCGGCCTCACCGCCTCCGTGCTCGTGTCGCAG
TGGACCTGGGCCGCCACCTTGTTGCAGTCCTCAACCGTCGCCAACAAGTA
TGGAATCTCTGGCCCGTTTTGGTACGCGTCTGGAGCCACCATTCAGATCC
TGCTCTTCTCCATGCTGGCCGTGTTGGTCAAACGCCGTGCGCCTACGTGC
CACACCTTTCTGGAGATTGTGCGCGCCCGCTGGGGCACACCGGCCCATCT
GGTGTTCGTCGTGTTCGCCTTCACCACCAATATTATCGTCACCTCTATGC
TCATTCTGGGTGGCTCCTCCACCGTCTCGGCGCTCACAGGCATGAATACC
GACTTGGCTTCGTTCCTCATCCCGCTTGGTGTCATTCTGTACACCTTGGC
TGGCGGCCTCAAGGCTACCTTCATCGCCTCGTACTTCAACACCGCTGTTA
TTCTCATCTCGTTGTGTATCTTCATCTTCCAGGTGTACGTCACCAACGAC
GATTTGGGCTCTCCTTCAACCGTGTGGGAAAGGCTCAACTCCGTTGTGAA
AATTGCCCCCGTGGAAAAGAACTACAACGGCTCGTACCTCACCATGCTTT
CGCTGGATGGCTTGTTCTTCGGTTTGACCAATATCGTCGGCAACTTTGGA
ACCGTGTTTGTAGATCAGTCGTACTGGCAGTCGGCCATTGCCGCCACGCC
CTCCGCCTCATGGAAGGGCTACTTGCTCGGTGGTCTGTGCTGGTTCTCCA
TTCCGTTCTCGTTGGCCACCTCCATGGGACTGGCGTCGGTGGCTCTTTCA
TTGCCACTGACCGGCGACGAGGTGGACGACGGTTTGGTGCCGCCCGCCGT
CGCGTCGCATCTTCTGGGCTCCGGTGGCGCCGCGCTGATCCTCATCATGC
TGTTCATGGCTGTGACTTCTACTGGTGCGGCCGAACAGATCGCGGTGTCG
TCGCTGGTGTCTTACGACGTGTACCGTACGTACATCAACCCCAACGCCAC
CGGGCGTCAGATCATCATTGTGTCGCGTGTGGCCATCTTGATGTTCGGGC
TTCTGATGGGTGTGCTCGGTATCGCGCTGAACGCTATTGGCGTGAGCCTC
AACTTTCTGTACCTGTTCATGGGCGTGATGATTGGATCGGCGGTGATCCC
GGTTGCGTTCTCCATCTCATGGAGCAAGTGCTCCGACGTGGCTGCGATCA
GTGGGGCGCTCGGCGGTCTTGCGCTCGGATTCACGACGTGGATCACGTAC
GGTGCGGTGGACGGCGGTGTGAGCATCGACAACCTGGGGCGCCCGCCGAT
CATGCTCGCCGGCAACCTGAGCTTCAATACGGTGGTGGAGGCGATGAGGA
GCCAAGGGGAGGGCGGTAAGAACATGGACGAGGAGTCGATGATGATGGAG
ACGGGCAAGTCGGTAAGCGACACGGTGGCTGAGTCGGAGATGACGGCACG
TAGCCTGGAAATGTAA
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