Ggra2545.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra2545.t1
Unique Name	Ggra2545.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	443

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000005_pilon	contig	tig00000005_pilon:683101..684429 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra2545	Ggra2545	Gracilaria gracilis GNS1m male	gene	tig00000005_pilon 683101..684429 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2545.t1.stop1	Ggra2545.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000005_pilon 683101..683103 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2545.t1.CDS1	Ggra2545.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000005_pilon 683101..684429 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2545.t1.exon1	Ggra2545.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000005_pilon 683101..684429 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2545.t1.start1	Ggra2545.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000005_pilon 684427..684429 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2545.t1	Ggra2545.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000005_pilon 683101..684429 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000005_pilon:683101..684429-
coding sequence from alignment at tig00000005_pilon:683101..684429-

mRNA sequence

>Ggra2545.t1 ID=Ggra2545.t1|Name=Ggra2545.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=443bp
MASSAPPPHHLRFDSAFSDDDDFNQLTVVDVTPRNSLVLAHSNHSQSTAL
SASTASRYTSRASIDVASPRTAEPSPDTARVDAAPKAVRKQRSHVEEPFS
FASLFAGFKKALKNNNSPNGATSPASLIQPPPNHHNLSPSHTWQKGSPSS
QLSRPIFRAIDGADAREFRLFLDDDEATRTNPVITLAPYGQQGTYAADIL
LIVHNTIRCELVDTFQIISVIRANFLSLSLRDMHNFRQWWRFFFLLWTEY
ITYHKNLLQPMIQNICQVDGRSDILKKRLRPLRASREWLCLKMEEITSYV
EEFESLPPARALCLICKNVHSFAENLMTYFRGCESVLPSFIESYHGEQVK
LSTECELIEQLRKSEHFPELMASIIRWIGSTAGSADGALDGKQQTKERDK
WLASHMFWLERPKVWYFFQRYEATHRSIFKRFVTRVRTLDSM*

spliced messenger RNA

>Ggra2545.t1 ID=Ggra2545.t1|Name=Ggra2545.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1329bp|location=Sequence derived from alignment at tig00000005_pilon:683101..684429- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCTCGTCCGCCCCGCCACCGCACCACCTGCGCTTCGACTCCGCCTT
CAGCGACGACGACGACTTCAACCAGCTCACCGTCGTCGACGTAACGCCGC
GCAACTCGCTCGTGCTCGCCCATTCCAACCACTCGCAGTCCACCGCGCTG
TCCGCGTCCACCGCCTCGCGTTATACCTCGCGTGCCTCCATCGACGTAGC
GTCGCCTCGTACCGCCGAGCCGTCGCCCGACACCGCGCGCGTCGACGCGG
CCCCAAAAGCCGTGCGCAAGCAGCGCTCGCACGTGGAGGAGCCTTTTTCC
TTTGCCTCGCTGTTTGCCGGCTTCAAGAAGGCGTTGAAGAACAACAACTC
TCCCAACGGCGCTACGTCTCCTGCCTCGCTCATACAGCCGCCGCCCAATC
ATCACAACCTCTCGCCGTCGCACACTTGGCAGAAGGGTTCACCGTCGTCG
CAGCTGTCACGCCCCATTTTCCGCGCCATCGATGGAGCGGATGCGCGCGA
GTTTCGTCTCTTTCTCGACGATGATGAAGCCACCAGAACCAATCCTGTCA
TCACGCTTGCTCCATACGGCCAACAAGGCACGTATGCGGCCGACATTTTG
CTCATCGTGCACAACACCATCCGCTGTGAGTTGGTGGACACCTTTCAGAT
TATCTCCGTGATTCGGGCCAACTTTTTGTCGCTTAGTCTTCGCGACATGC
ACAACTTTCGGCAGTGGTGGCGCTTCTTCTTTCTTCTTTGGACAGAGTAT
ATCACGTATCACAAAAACTTGTTGCAGCCCATGATACAAAACATTTGTCA
GGTGGATGGTCGCAGTGACATACTCAAGAAACGACTGCGTCCGTTGCGCG
CTTCTAGGGAGTGGCTGTGCCTTAAGATGGAGGAGATCACCAGTTATGTG
GAGGAATTCGAGTCTCTACCGCCTGCGCGCGCGCTGTGCCTCATCTGCAA
GAACGTGCATTCGTTTGCAGAGAACCTGATGACGTATTTCCGGGGGTGTG
AGAGTGTTCTTCCGTCGTTTATCGAAAGCTACCACGGGGAGCAAGTGAAG
CTGAGCACGGAATGTGAGCTGATCGAGCAGCTGAGGAAGAGCGAGCACTT
CCCCGAACTGATGGCTTCCATCATTCGATGGATTGGAAGCACGGCGGGCA
GCGCGGATGGGGCGTTGGATGGCAAGCAGCAGACGAAGGAACGAGACAAA
TGGCTCGCTTCGCACATGTTTTGGTTGGAACGACCCAAGGTGTGGTACTT
CTTTCAGCGCTACGAGGCTACGCACCGATCCATATTTAAACGATTTGTCA
CTCGCGTCCGCACGCTGGATTCGATGTAA

protein sequence of Ggra2545.t1

>Ggra2545.t1 ID=Ggra2545.t1|Name=Ggra2545.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=443bp
MASSAPPPHHLRFDSAFSDDDDFNQLTVVDVTPRNSLVLAHSNHSQSTAL
SASTASRYTSRASIDVASPRTAEPSPDTARVDAAPKAVRKQRSHVEEPFS
FASLFAGFKKALKNNNSPNGATSPASLIQPPPNHHNLSPSHTWQKGSPSS
QLSRPIFRAIDGADAREFRLFLDDDEATRTNPVITLAPYGQQGTYAADIL
LIVHNTIRCELVDTFQIISVIRANFLSLSLRDMHNFRQWWRFFFLLWTEY
ITYHKNLLQPMIQNICQVDGRSDILKKRLRPLRASREWLCLKMEEITSYV
EEFESLPPARALCLICKNVHSFAENLMTYFRGCESVLPSFIESYHGEQVK
LSTECELIEQLRKSEHFPELMASIIRWIGSTAGSADGALDGKQQTKERDK
WLASHMFWLERPKVWYFFQRYEATHRSIFKRFVTRVRTLDSM*

mRNA from alignment at tig00000005_pilon:683101..684429-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra2545.t1 ID=Ggra2545.t1|Name=Ggra2545.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1329bp|location=Sequence derived from alignment at tig00000005_pilon:683101..684429- (Gracilaria gracilis GNS1m male)
ATGGCCTCGTCCGCCCCGCCACCGCACCACCTGCGCTTCGACTCCGCCTT
CAGCGACGACGACGACTTCAACCAGCTCACCGTCGTCGACGTAACGCCGC
GCAACTCGCTCGTGCTCGCCCATTCCAACCACTCGCAGTCCACCGCGCTG
TCCGCGTCCACCGCCTCGCGTTATACCTCGCGTGCCTCCATCGACGTAGC
GTCGCCTCGTACCGCCGAGCCGTCGCCCGACACCGCGCGCGTCGACGCGG
CCCCAAAAGCCGTGCGCAAGCAGCGCTCGCACGTGGAGGAGCCTTTTTCC
TTTGCCTCGCTGTTTGCCGGCTTCAAGAAGGCGTTGAAGAACAACAACTC
TCCCAACGGCGCTACGTCTCCTGCCTCGCTCATACAGCCGCCGCCCAATC
ATCACAACCTCTCGCCGTCGCACACTTGGCAGAAGGGTTCACCGTCGTCG
CAGCTGTCACGCCCCATTTTCCGCGCCATCGATGGAGCGGATGCGCGCGA
GTTTCGTCTCTTTCTCGACGATGATGAAGCCACCAGAACCAATCCTGTCA
TCACGCTTGCTCCATACGGCCAACAAGGCACGTATGCGGCCGACATTTTG
CTCATCGTGCACAACACCATCCGCTGTGAGTTGGTGGACACCTTTCAGAT
TATCTCCGTGATTCGGGCCAACTTTTTGTCGCTTAGTCTTCGCGACATGC
ACAACTTTCGGCAGTGGTGGCGCTTCTTCTTTCTTCTTTGGACAGAGTAT
ATCACGTATCACAAAAACTTGTTGCAGCCCATGATACAAAACATTTGTCA
GGTGGATGGTCGCAGTGACATACTCAAGAAACGACTGCGTCCGTTGCGCG
CTTCTAGGGAGTGGCTGTGCCTTAAGATGGAGGAGATCACCAGTTATGTG
GAGGAATTCGAGTCTCTACCGCCTGCGCGCGCGCTGTGCCTCATCTGCAA
GAACGTGCATTCGTTTGCAGAGAACCTGATGACGTATTTCCGGGGGTGTG
AGAGTGTTCTTCCGTCGTTTATCGAAAGCTACCACGGGGAGCAAGTGAAG
CTGAGCACGGAATGTGAGCTGATCGAGCAGCTGAGGAAGAGCGAGCACTT
CCCCGAACTGATGGCTTCCATCATTCGATGGATTGGAAGCACGGCGGGCA
GCGCGGATGGGGCGTTGGATGGCAAGCAGCAGACGAAGGAACGAGACAAA
TGGCTCGCTTCGCACATGTTTTGGTTGGAACGACCCAAGGTGTGGTACTT
CTTTCAGCGCTACGAGGCTACGCACCGATCCATATTTAAACGATTTGTCA
CTCGCGTCCGCACGCTGGATTCGATGTAA

Coding sequence (CDS) from alignment at tig00000005_pilon:683101..684429-

>Ggra2545.t1 ID=Ggra2545.t1|Name=Ggra2545.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1329bp|location=Sequence derived from alignment at tig00000005_pilon:683101..684429- (Gracilaria gracilis GNS1m male)
ATGGCCTCGTCCGCCCCGCCACCGCACCACCTGCGCTTCGACTCCGCCTT
CAGCGACGACGACGACTTCAACCAGCTCACCGTCGTCGACGTAACGCCGC
GCAACTCGCTCGTGCTCGCCCATTCCAACCACTCGCAGTCCACCGCGCTG
TCCGCGTCCACCGCCTCGCGTTATACCTCGCGTGCCTCCATCGACGTAGC
GTCGCCTCGTACCGCCGAGCCGTCGCCCGACACCGCGCGCGTCGACGCGG
CCCCAAAAGCCGTGCGCAAGCAGCGCTCGCACGTGGAGGAGCCTTTTTCC
TTTGCCTCGCTGTTTGCCGGCTTCAAGAAGGCGTTGAAGAACAACAACTC
TCCCAACGGCGCTACGTCTCCTGCCTCGCTCATACAGCCGCCGCCCAATC
ATCACAACCTCTCGCCGTCGCACACTTGGCAGAAGGGTTCACCGTCGTCG
CAGCTGTCACGCCCCATTTTCCGCGCCATCGATGGAGCGGATGCGCGCGA
GTTTCGTCTCTTTCTCGACGATGATGAAGCCACCAGAACCAATCCTGTCA
TCACGCTTGCTCCATACGGCCAACAAGGCACGTATGCGGCCGACATTTTG
CTCATCGTGCACAACACCATCCGCTGTGAGTTGGTGGACACCTTTCAGAT
TATCTCCGTGATTCGGGCCAACTTTTTGTCGCTTAGTCTTCGCGACATGC
ACAACTTTCGGCAGTGGTGGCGCTTCTTCTTTCTTCTTTGGACAGAGTAT
ATCACGTATCACAAAAACTTGTTGCAGCCCATGATACAAAACATTTGTCA
GGTGGATGGTCGCAGTGACATACTCAAGAAACGACTGCGTCCGTTGCGCG
CTTCTAGGGAGTGGCTGTGCCTTAAGATGGAGGAGATCACCAGTTATGTG
GAGGAATTCGAGTCTCTACCGCCTGCGCGCGCGCTGTGCCTCATCTGCAA
GAACGTGCATTCGTTTGCAGAGAACCTGATGACGTATTTCCGGGGGTGTG
AGAGTGTTCTTCCGTCGTTTATCGAAAGCTACCACGGGGAGCAAGTGAAG
CTGAGCACGGAATGTGAGCTGATCGAGCAGCTGAGGAAGAGCGAGCACTT
CCCCGAACTGATGGCTTCCATCATTCGATGGATTGGAAGCACGGCGGGCA
GCGCGGATGGGGCGTTGGATGGCAAGCAGCAGACGAAGGAACGAGACAAA
TGGCTCGCTTCGCACATGTTTTGGTTGGAACGACCCAAGGTGTGGTACTT
CTTTCAGCGCTACGAGGCTACGCACCGATCCATATTTAAACGATTTGTCA
CTCGCGTCCGCACGCTGGATTCGATGTAA