Ggra2543.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra2543.t1
Unique Name	Ggra2543.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	775

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000005_pilon	contig	tig00000005_pilon:664539..666863 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	4098.XP_009621357.1
PFAMs	COG4,PPR,PPR_2,RINT1_TIP1
Max annot lvl	35493\|Streptophyta
KEGG ko	ko:K20291
GOs	GO:0000301,GO:0003674,GO:0003676,GO:0003723,GO:0003824,GO:0004518,GO:0004519,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005794,GO:0006139,GO:0006725,GO:0006807,GO:0006810,GO:0006890,GO:0006891,GO:0006996,GO:0007030,GO:0008150,GO:0008152,GO:0009451,GO:0009987,GO:0010256,GO:0012505,GO:0016043,GO:0016070,GO:0016192,GO:0016787,GO:0016788,GO:0017119,GO:0022607,GO:0032991,GO:0034622,GO:0034641,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044431,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0048193,GO:0048213,GO:0051179,GO:0051234,GO:0065003,GO:0071704,GO:0071840,GO:0090304,GO:0090305,GO:0097159,GO:0099023,GO:1901360,GO:1901363
Evalue	5.95e-72
EggNOG OGs	KOG0412@1\|root,KOG0412@2759\|Eukaryota,37KBZ@33090\|Viridiplantae,3GB2Q@35493\|Streptophyta,44E03@71274\|asterids
Description	COG4 transport protein
COG category	U
BRITE	ko00000,ko04131

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra2543	Ggra2543	Gracilaria gracilis GNS1m male	gene	tig00000005_pilon 664539..666863 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2543.t1.stop1	Ggra2543.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000005_pilon 664539..664541 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2543.t1.CDS1	Ggra2543.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000005_pilon 664539..666863 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2543.t1.exon1	Ggra2543.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000005_pilon 664539..666863 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2543.t1.start1	Ggra2543.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000005_pilon 666861..666863 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2543.t1	Ggra2543.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000005_pilon 664539..666863 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000005_pilon:664539..666863-
coding sequence from alignment at tig00000005_pilon:664539..666863-

mRNA sequence

>Ggra2543.t1 ID=Ggra2543.t1|Name=Ggra2543.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=775bp
MPAPAQDAPITSLATLSSITQALQDAIISSEQTEAALDEQLAHSAQRAGE
RAQILETAANFSTAVSKETQELASLLESAVRKSDSACSDIRKLDVLLSRA
NGALSWADDILTLRVCAEGAKTSLSADDLASAARHVETYLTLGDTIRADS
ASATAVSQIEQSRAELSRKVRSAAEEKLKSELSTEDAISAVQLFVPIGLA
DEGLTKLCEHLKTRLARESDTDVRELLLASKAEGVGADEPHIVALARLFE
SVAAIVHDGRPSLSTLFGASSVSFILEGLQEQCDSSLNRILDRYEEAKRM
DEVIRALRSETTNARELDGLLNELTLMSQRIAGYIDFLVGKRLPTVPDGN
TGQTDDDSATDYRKIEKMLEKSGLFKRKRDLAGFYNTIESYFMRENARLA
IKIDESNGEDAETSTAVDDFFFVLQKCFQRAFAYGDTDPEVLRLVLNQVS
LCLMNDLIPYMRRRLRETEAALEKLFGGAGATSALPAAALTVSYLTELAK
ANITIPGGSDMSSSNTDVAKYDFFVALNNTSVSASYASRLRSNVEKAVHA
SAKLSSDDRTLVVAPLTNINDASRTLSQASEQGVAKLASVLLDRVTALVQ
NSLKETSYMVTEAQYSLDSDATPSFSREVANQIESKVLSSSLEKRLTETN
WDALVRQVAEWYAQQVEAIVFLPAIVGASMTKAFTAFGGLRADRDVRAIS
AYFSNKSRRSTVRDVFGRLSQLAMLVNLERPAEIYDVWGPNAGGMTWRLT
AGEVRRALSLRSDFNKDAIKSLKL*

spliced messenger RNA

>Ggra2543.t1 ID=Ggra2543.t1|Name=Ggra2543.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2325bp|location=Sequence derived from alignment at tig00000005_pilon:664539..666863- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCGGCGCCAGCACAAGACGCTCCGATCACTTCTCTCGCAACGCTTTC
GTCTATAACCCAGGCATTGCAGGATGCAATAATATCATCGGAGCAAACGG
AGGCTGCTCTTGATGAACAGCTTGCCCACTCAGCTCAGAGAGCTGGCGAG
AGAGCGCAGATTTTGGAAACTGCTGCAAACTTCTCAACCGCAGTATCAAA
AGAAACACAAGAACTTGCTTCTCTTCTCGAATCTGCAGTGCGAAAATCGG
ATTCAGCATGCTCAGATATTCGTAAACTTGACGTGCTGCTGTCTCGAGCG
AATGGGGCTTTGTCTTGGGCTGATGATATACTAACTTTAAGAGTCTGTGC
TGAAGGGGCCAAAACAAGTTTGAGTGCGGACGATCTTGCAAGTGCTGCTC
GTCATGTAGAGACATACCTGACCTTGGGCGACACAATTCGAGCAGACTCA
GCGTCTGCCACTGCCGTTTCACAAATCGAGCAATCACGTGCGGAGTTATC
TCGGAAGGTTCGTAGCGCTGCTGAAGAGAAACTAAAATCAGAACTTTCTA
CGGAAGATGCTATAAGCGCTGTACAACTTTTCGTACCTATTGGTTTGGCA
GATGAAGGGTTGACCAAGCTTTGCGAGCATCTGAAGACACGTCTCGCGCG
CGAGAGCGATACTGATGTCCGGGAACTATTGCTTGCTTCTAAAGCTGAAG
GCGTTGGGGCTGATGAACCGCATATAGTTGCTCTGGCTCGCCTGTTTGAA
AGCGTTGCGGCCATCGTACACGACGGAAGGCCTAGTCTTTCAACCTTATT
TGGGGCCTCTTCGGTCTCGTTTATTCTTGAAGGGCTTCAGGAGCAATGCG
ACTCGAGCTTGAACCGTATTCTCGATCGGTATGAAGAAGCTAAGCGTATG
GATGAAGTCATTCGTGCATTACGTTCCGAAACGACAAATGCAAGAGAGTT
GGATGGTCTTCTAAACGAACTTACATTGATGAGCCAAAGGATTGCGGGAT
ATATCGACTTTTTAGTTGGTAAACGGCTGCCAACCGTTCCAGACGGAAAC
ACTGGGCAGACAGATGATGATTCAGCAACTGATTATCGCAAAATCGAAAA
GATGCTAGAGAAGTCCGGGCTGTTTAAGAGAAAACGGGATCTGGCCGGAT
TCTACAATACAATTGAATCCTACTTCATGAGAGAAAACGCAAGATTGGCG
ATCAAGATTGACGAAAGCAACGGTGAGGACGCTGAGACTTCAACCGCTGT
TGATGACTTTTTCTTCGTCTTGCAAAAGTGTTTCCAACGAGCTTTCGCGT
ATGGCGACACAGATCCTGAAGTATTGCGTTTGGTGCTTAATCAGGTCAGC
CTCTGCCTCATGAACGATCTGATTCCTTACATGAGACGGCGGCTTCGGGA
AACTGAAGCAGCCCTTGAAAAGCTTTTTGGCGGTGCAGGTGCAACTTCTG
CTTTACCGGCAGCGGCATTGACTGTATCATACCTCACAGAACTGGCAAAA
GCAAACATCACCATCCCAGGAGGAAGCGATATGTCTTCCAGCAATACCGA
CGTTGCGAAGTATGACTTTTTCGTTGCACTCAACAACACTTCAGTTTCCG
CGAGCTATGCAAGTCGACTTCGCAGTAACGTTGAGAAGGCAGTTCACGCT
TCGGCGAAGCTTTCATCCGACGATAGGACTCTAGTGGTTGCCCCCCTGAC
AAACATAAACGACGCTTCTCGAACGCTCTCGCAGGCATCAGAACAGGGGG
TTGCCAAACTAGCTTCGGTTCTATTGGACAGAGTAACTGCTCTAGTGCAG
AACTCGTTGAAGGAAACCTCGTATATGGTTACCGAGGCGCAGTATTCACT
CGACTCTGATGCAACTCCATCATTTTCACGTGAGGTTGCAAATCAGATAG
AGAGCAAAGTTTTGAGCTCTTCCCTTGAGAAGCGTCTCACGGAAACAAAC
TGGGACGCGCTTGTGCGGCAGGTAGCCGAGTGGTATGCGCAACAAGTGGA
GGCAATCGTTTTCCTTCCCGCCATTGTAGGTGCAAGTATGACAAAGGCGT
TTACGGCGTTTGGTGGTTTGCGAGCAGACAGAGATGTGAGAGCAATCTCA
GCATACTTTTCGAACAAGAGCCGGCGGAGTACTGTTAGGGACGTGTTTGG
AAGACTATCGCAGCTAGCTATGCTGGTCAATCTTGAACGACCTGCCGAAA
TATACGATGTTTGGGGACCTAACGCGGGTGGTATGACTTGGAGATTAACA
GCTGGCGAAGTTAGACGAGCACTGTCATTACGGTCGGATTTCAACAAAGA
TGCGATTAAGTCGTTGAAGCTTTAG

protein sequence of Ggra2543.t1

>Ggra2543.t1 ID=Ggra2543.t1|Name=Ggra2543.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=775bp
MPAPAQDAPITSLATLSSITQALQDAIISSEQTEAALDEQLAHSAQRAGE
RAQILETAANFSTAVSKETQELASLLESAVRKSDSACSDIRKLDVLLSRA
NGALSWADDILTLRVCAEGAKTSLSADDLASAARHVETYLTLGDTIRADS
ASATAVSQIEQSRAELSRKVRSAAEEKLKSELSTEDAISAVQLFVPIGLA
DEGLTKLCEHLKTRLARESDTDVRELLLASKAEGVGADEPHIVALARLFE
SVAAIVHDGRPSLSTLFGASSVSFILEGLQEQCDSSLNRILDRYEEAKRM
DEVIRALRSETTNARELDGLLNELTLMSQRIAGYIDFLVGKRLPTVPDGN
TGQTDDDSATDYRKIEKMLEKSGLFKRKRDLAGFYNTIESYFMRENARLA
IKIDESNGEDAETSTAVDDFFFVLQKCFQRAFAYGDTDPEVLRLVLNQVS
LCLMNDLIPYMRRRLRETEAALEKLFGGAGATSALPAAALTVSYLTELAK
ANITIPGGSDMSSSNTDVAKYDFFVALNNTSVSASYASRLRSNVEKAVHA
SAKLSSDDRTLVVAPLTNINDASRTLSQASEQGVAKLASVLLDRVTALVQ
NSLKETSYMVTEAQYSLDSDATPSFSREVANQIESKVLSSSLEKRLTETN
WDALVRQVAEWYAQQVEAIVFLPAIVGASMTKAFTAFGGLRADRDVRAIS
AYFSNKSRRSTVRDVFGRLSQLAMLVNLERPAEIYDVWGPNAGGMTWRLT
AGEVRRALSLRSDFNKDAIKSLKL*

mRNA from alignment at tig00000005_pilon:664539..666863-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra2543.t1 ID=Ggra2543.t1|Name=Ggra2543.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2325bp|location=Sequence derived from alignment at tig00000005_pilon:664539..666863- (Gracilaria gracilis GNS1m male)
ATGCCGGCGCCAGCACAAGACGCTCCGATCACTTCTCTCGCAACGCTTTC
GTCTATAACCCAGGCATTGCAGGATGCAATAATATCATCGGAGCAAACGG
AGGCTGCTCTTGATGAACAGCTTGCCCACTCAGCTCAGAGAGCTGGCGAG
AGAGCGCAGATTTTGGAAACTGCTGCAAACTTCTCAACCGCAGTATCAAA
AGAAACACAAGAACTTGCTTCTCTTCTCGAATCTGCAGTGCGAAAATCGG
ATTCAGCATGCTCAGATATTCGTAAACTTGACGTGCTGCTGTCTCGAGCG
AATGGGGCTTTGTCTTGGGCTGATGATATACTAACTTTAAGAGTCTGTGC
TGAAGGGGCCAAAACAAGTTTGAGTGCGGACGATCTTGCAAGTGCTGCTC
GTCATGTAGAGACATACCTGACCTTGGGCGACACAATTCGAGCAGACTCA
GCGTCTGCCACTGCCGTTTCACAAATCGAGCAATCACGTGCGGAGTTATC
TCGGAAGGTTCGTAGCGCTGCTGAAGAGAAACTAAAATCAGAACTTTCTA
CGGAAGATGCTATAAGCGCTGTACAACTTTTCGTACCTATTGGTTTGGCA
GATGAAGGGTTGACCAAGCTTTGCGAGCATCTGAAGACACGTCTCGCGCG
CGAGAGCGATACTGATGTCCGGGAACTATTGCTTGCTTCTAAAGCTGAAG
GCGTTGGGGCTGATGAACCGCATATAGTTGCTCTGGCTCGCCTGTTTGAA
AGCGTTGCGGCCATCGTACACGACGGAAGGCCTAGTCTTTCAACCTTATT
TGGGGCCTCTTCGGTCTCGTTTATTCTTGAAGGGCTTCAGGAGCAATGCG
ACTCGAGCTTGAACCGTATTCTCGATCGGTATGAAGAAGCTAAGCGTATG
GATGAAGTCATTCGTGCATTACGTTCCGAAACGACAAATGCAAGAGAGTT
GGATGGTCTTCTAAACGAACTTACATTGATGAGCCAAAGGATTGCGGGAT
ATATCGACTTTTTAGTTGGTAAACGGCTGCCAACCGTTCCAGACGGAAAC
ACTGGGCAGACAGATGATGATTCAGCAACTGATTATCGCAAAATCGAAAA
GATGCTAGAGAAGTCCGGGCTGTTTAAGAGAAAACGGGATCTGGCCGGAT
TCTACAATACAATTGAATCCTACTTCATGAGAGAAAACGCAAGATTGGCG
ATCAAGATTGACGAAAGCAACGGTGAGGACGCTGAGACTTCAACCGCTGT
TGATGACTTTTTCTTCGTCTTGCAAAAGTGTTTCCAACGAGCTTTCGCGT
ATGGCGACACAGATCCTGAAGTATTGCGTTTGGTGCTTAATCAGGTCAGC
CTCTGCCTCATGAACGATCTGATTCCTTACATGAGACGGCGGCTTCGGGA
AACTGAAGCAGCCCTTGAAAAGCTTTTTGGCGGTGCAGGTGCAACTTCTG
CTTTACCGGCAGCGGCATTGACTGTATCATACCTCACAGAACTGGCAAAA
GCAAACATCACCATCCCAGGAGGAAGCGATATGTCTTCCAGCAATACCGA
CGTTGCGAAGTATGACTTTTTCGTTGCACTCAACAACACTTCAGTTTCCG
CGAGCTATGCAAGTCGACTTCGCAGTAACGTTGAGAAGGCAGTTCACGCT
TCGGCGAAGCTTTCATCCGACGATAGGACTCTAGTGGTTGCCCCCCTGAC
AAACATAAACGACGCTTCTCGAACGCTCTCGCAGGCATCAGAACAGGGGG
TTGCCAAACTAGCTTCGGTTCTATTGGACAGAGTAACTGCTCTAGTGCAG
AACTCGTTGAAGGAAACCTCGTATATGGTTACCGAGGCGCAGTATTCACT
CGACTCTGATGCAACTCCATCATTTTCACGTGAGGTTGCAAATCAGATAG
AGAGCAAAGTTTTGAGCTCTTCCCTTGAGAAGCGTCTCACGGAAACAAAC
TGGGACGCGCTTGTGCGGCAGGTAGCCGAGTGGTATGCGCAACAAGTGGA
GGCAATCGTTTTCCTTCCCGCCATTGTAGGTGCAAGTATGACAAAGGCGT
TTACGGCGTTTGGTGGTTTGCGAGCAGACAGAGATGTGAGAGCAATCTCA
GCATACTTTTCGAACAAGAGCCGGCGGAGTACTGTTAGGGACGTGTTTGG
AAGACTATCGCAGCTAGCTATGCTGGTCAATCTTGAACGACCTGCCGAAA
TATACGATGTTTGGGGACCTAACGCGGGTGGTATGACTTGGAGATTAACA
GCTGGCGAAGTTAGACGAGCACTGTCATTACGGTCGGATTTCAACAAAGA
TGCGATTAAGTCGTTGAAGCTTTAG

Coding sequence (CDS) from alignment at tig00000005_pilon:664539..666863-

>Ggra2543.t1 ID=Ggra2543.t1|Name=Ggra2543.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=2325bp|location=Sequence derived from alignment at tig00000005_pilon:664539..666863- (Gracilaria gracilis GNS1m male)
ATGCCGGCGCCAGCACAAGACGCTCCGATCACTTCTCTCGCAACGCTTTC
GTCTATAACCCAGGCATTGCAGGATGCAATAATATCATCGGAGCAAACGG
AGGCTGCTCTTGATGAACAGCTTGCCCACTCAGCTCAGAGAGCTGGCGAG
AGAGCGCAGATTTTGGAAACTGCTGCAAACTTCTCAACCGCAGTATCAAA
AGAAACACAAGAACTTGCTTCTCTTCTCGAATCTGCAGTGCGAAAATCGG
ATTCAGCATGCTCAGATATTCGTAAACTTGACGTGCTGCTGTCTCGAGCG
AATGGGGCTTTGTCTTGGGCTGATGATATACTAACTTTAAGAGTCTGTGC
TGAAGGGGCCAAAACAAGTTTGAGTGCGGACGATCTTGCAAGTGCTGCTC
GTCATGTAGAGACATACCTGACCTTGGGCGACACAATTCGAGCAGACTCA
GCGTCTGCCACTGCCGTTTCACAAATCGAGCAATCACGTGCGGAGTTATC
TCGGAAGGTTCGTAGCGCTGCTGAAGAGAAACTAAAATCAGAACTTTCTA
CGGAAGATGCTATAAGCGCTGTACAACTTTTCGTACCTATTGGTTTGGCA
GATGAAGGGTTGACCAAGCTTTGCGAGCATCTGAAGACACGTCTCGCGCG
CGAGAGCGATACTGATGTCCGGGAACTATTGCTTGCTTCTAAAGCTGAAG
GCGTTGGGGCTGATGAACCGCATATAGTTGCTCTGGCTCGCCTGTTTGAA
AGCGTTGCGGCCATCGTACACGACGGAAGGCCTAGTCTTTCAACCTTATT
TGGGGCCTCTTCGGTCTCGTTTATTCTTGAAGGGCTTCAGGAGCAATGCG
ACTCGAGCTTGAACCGTATTCTCGATCGGTATGAAGAAGCTAAGCGTATG
GATGAAGTCATTCGTGCATTACGTTCCGAAACGACAAATGCAAGAGAGTT
GGATGGTCTTCTAAACGAACTTACATTGATGAGCCAAAGGATTGCGGGAT
ATATCGACTTTTTAGTTGGTAAACGGCTGCCAACCGTTCCAGACGGAAAC
ACTGGGCAGACAGATGATGATTCAGCAACTGATTATCGCAAAATCGAAAA
GATGCTAGAGAAGTCCGGGCTGTTTAAGAGAAAACGGGATCTGGCCGGAT
TCTACAATACAATTGAATCCTACTTCATGAGAGAAAACGCAAGATTGGCG
ATCAAGATTGACGAAAGCAACGGTGAGGACGCTGAGACTTCAACCGCTGT
TGATGACTTTTTCTTCGTCTTGCAAAAGTGTTTCCAACGAGCTTTCGCGT
ATGGCGACACAGATCCTGAAGTATTGCGTTTGGTGCTTAATCAGGTCAGC
CTCTGCCTCATGAACGATCTGATTCCTTACATGAGACGGCGGCTTCGGGA
AACTGAAGCAGCCCTTGAAAAGCTTTTTGGCGGTGCAGGTGCAACTTCTG
CTTTACCGGCAGCGGCATTGACTGTATCATACCTCACAGAACTGGCAAAA
GCAAACATCACCATCCCAGGAGGAAGCGATATGTCTTCCAGCAATACCGA
CGTTGCGAAGTATGACTTTTTCGTTGCACTCAACAACACTTCAGTTTCCG
CGAGCTATGCAAGTCGACTTCGCAGTAACGTTGAGAAGGCAGTTCACGCT
TCGGCGAAGCTTTCATCCGACGATAGGACTCTAGTGGTTGCCCCCCTGAC
AAACATAAACGACGCTTCTCGAACGCTCTCGCAGGCATCAGAACAGGGGG
TTGCCAAACTAGCTTCGGTTCTATTGGACAGAGTAACTGCTCTAGTGCAG
AACTCGTTGAAGGAAACCTCGTATATGGTTACCGAGGCGCAGTATTCACT
CGACTCTGATGCAACTCCATCATTTTCACGTGAGGTTGCAAATCAGATAG
AGAGCAAAGTTTTGAGCTCTTCCCTTGAGAAGCGTCTCACGGAAACAAAC
TGGGACGCGCTTGTGCGGCAGGTAGCCGAGTGGTATGCGCAACAAGTGGA
GGCAATCGTTTTCCTTCCCGCCATTGTAGGTGCAAGTATGACAAAGGCGT
TTACGGCGTTTGGTGGTTTGCGAGCAGACAGAGATGTGAGAGCAATCTCA
GCATACTTTTCGAACAAGAGCCGGCGGAGTACTGTTAGGGACGTGTTTGG
AAGACTATCGCAGCTAGCTATGCTGGTCAATCTTGAACGACCTGCCGAAA
TATACGATGTTTGGGGACCTAACGCGGGTGGTATGACTTGGAGATTAACA
GCTGGCGAAGTTAGACGAGCACTGTCATTACGGTCGGATTTCAACAAAGA
TGCGATTAAGTCGTTGAAGCTTTAG