Ggra2542.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra2542.t1
Unique NameGgra2542.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length276
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000005_piloncontigtig00000005_pilon:663239..664224 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005705382.1
Preferred namePSMB7
PFAMsPr_beta_C,Proteasome
Max annot lvl2759|Eukaryota
KEGG rclassRC00797
KEGG koko:K02733,ko:K02739,ko:K15402,ko:K18624
KEGG ReactionR09454
KEGG Pathwayko00073,ko03050,map00073,map03050
KEGG ModuleM00337,M00340
GOsGO:0000502,GO:0000902,GO:0001775,GO:0002252,GO:0002263,GO:0002274,GO:0002275,GO:0002283,GO:0002366,GO:0002376,GO:0002443,GO:0002444,GO:0002446,GO:0003674,GO:0003824,GO:0004175,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005783,GO:0005789,GO:0005829,GO:0005839,GO:0006464,GO:0006508,GO:0006511,GO:0006807,GO:0006810,GO:0006887,GO:0006955,GO:0006959,GO:0007088,GO:0007346,GO:0008150,GO:0008152,GO:0008233,GO:0008283,GO:0009056,GO:0009057,GO:0009653,GO:0009896,GO:0009987,GO:0010498,GO:0010499,GO:0010564,GO:0010638,GO:0010965,GO:0012505,GO:0016020,GO:0016043,GO:0016192,GO:0016579,GO:0016787,GO:0019538,GO:0019774,GO:0019941,GO:0030071,GO:0030141,GO:0030163,GO:0031331,GO:0031410,GO:0031597,GO:0031974,GO:0031981,GO:0031982,GO:0031983,GO:0031984,GO:0032270,GO:0032436,GO:0032502,GO:0032940,GO:0032943,GO:0032989,GO:0032991,GO:0033043,GO:0033044,GO:0033045,GO:0033047,GO:0034515,GO:0034774,GO:0036211,GO:0036230,GO:0042098,GO:0042110,GO:0042119,GO:0042175,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043299,GO:0043312,GO:0043412,GO:0043632,GO:0043687,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044432,GO:0044433,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0045055,GO:0045321,GO:0045732,GO:0045787,GO:0045840,GO:0045842,GO:0045862,GO:0045931,GO:0046649,GO:0046651,GO:0046903,GO:0048518,GO:0048522,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0050896,GO:0051128,GO:0051130,GO:0051179,GO:0051234,GO:0051247,GO:0051603,GO:0051726,GO:0051781,GO:0051783,GO:0051785,GO:0051983,GO:0051984,GO:0060205,GO:0062033,GO:0065007,GO:0070011,GO:0070013,GO:0070646,GO:0070647,GO:0070661,GO:0071704,GO:0071840,GO:0090068,GO:0097708,GO:0098827,GO:0099503,GO:0101002,GO:0140096,GO:1901564,GO:1901565,GO:1901575,GO:1901800,GO:1901970,GO:1901987,GO:1901989,GO:1901990,GO:1901992,GO:1902099,GO:1902101,GO:1902494,GO:1903052,GO:1903364,GO:1904813,GO:1905368,GO:1905369,GO:1905818,GO:1905820,GO:1990111,GO:2001252
Evalue1.15e-122
EggNOG OGsCOG0638@1|root,KOG0173@2759|Eukaryota
EC3.4.25.1
Descriptionthreonine-type endopeptidase activity
COG categoryO
BRITEko00000,ko00001,ko00002,ko00199,ko01000,ko01002,ko03051,ko04812
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra2542Ggra2542Gracilaria gracilis GNS1m malegenetig00000005_pilon 663239..664224 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2542.t1Ggra2542.t1Gracilaria gracilis GNS1m malepolypeptidetig00000005_pilon 663239..664224 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2542.t1.start1Ggra2542.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000005_pilon 663239..663241 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2542.t1.CDS1Ggra2542.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000005_pilon 663239..663312 +
Ggra2542.t1.CDS2Ggra2542.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000005_pilon 663377..663759 +
Ggra2542.t1.CDS3Ggra2542.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000005_pilon 663854..664224 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2542.t1.exon1Ggra2542.t1.exon1Gracilaria gracilis GNS1m maleexontig00000005_pilon 663239..663312 +
Ggra2542.t1.exon2Ggra2542.t1.exon2Gracilaria gracilis GNS1m maleexontig00000005_pilon 663377..663759 +
Ggra2542.t1.exon3Ggra2542.t1.exon3Gracilaria gracilis GNS1m maleexontig00000005_pilon 663854..664224 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2542.t1.intron1Ggra2542.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000005_pilon 663313..663376 +
Ggra2542.t1.intron2Ggra2542.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000005_pilon 663760..663853 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2542.t1.stop1Ggra2542.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000005_pilon 664222..664224 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra2542.t1 ID=Ggra2542.t1|Name=Ggra2542.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=276bp
MNTPQSARGGFCFENAVRNSILSSKGYKPPTARKTGTTIAGVVFEGGIVL
GADTRATAGATVFEKNCQKIHYIADNIMCCGAGTAADTEHTTQLIASKIW
LHSLATRRKPRVATALNMLKHMLFRYQGYVSAALVLGGVDFLGPHLYTVY
PHGSTDRLPFVSMGSGSLAAMAVFESKYKDGMTVEEAKQLVYEGISGGIF
NDLGSGGNVDLCIITADGKEFIRGFAKENERKYRRPAGYSFPKGTTPVVA
GSVTFKERSKGFALLTEQDGMDVSA*
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spliced messenger RNA

>Ggra2542.t1 ID=Ggra2542.t1|Name=Ggra2542.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=828bp|location=Sequence derived from alignment at tig00000005_pilon:663239..664224+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAACACACCTCAGTCCGCCCGCGGCGGTTTCTGTTTCGAAAATGCCGT
CCGCAACTCCATTCTTTCTTCCAAAGGCTACAAGCCGCCAACAGCCCGCA
AGACCGGAACAACCATCGCCGGCGTCGTTTTTGAAGGCGGCATAGTTCTC
GGCGCCGATACGCGAGCTACTGCAGGTGCTACCGTGTTTGAAAAGAACTG
CCAGAAGATTCACTATATTGCTGATAATATCATGTGCTGCGGGGCGGGAA
CAGCTGCCGATACGGAACACACAACTCAACTCATTGCCTCCAAGATTTGG
TTGCATTCGTTGGCTACTCGTCGTAAACCGCGCGTTGCTACCGCGTTGAA
TATGCTCAAGCACATGCTTTTCAGGTATCAGGGTTATGTTTCAGCTGCGT
TAGTTCTAGGCGGCGTTGATTTTCTTGGCCCTCATTTGTACACTGTGTAT
CCGCACGGAAGCACGGATCGTTTGCCATTCGTGTCGATGGGATCAGGATC
TTTGGCTGCAATGGCGGTCTTTGAATCAAAATACAAGGATGGAATGACTG
TGGAAGAAGCAAAACAACTTGTGTATGAGGGTATATCTGGTGGTATATTC
AACGATTTGGGTTCTGGTGGAAACGTTGACCTTTGCATCATTACTGCGGA
TGGCAAAGAGTTTATTCGCGGCTTTGCTAAAGAAAATGAGAGGAAGTATC
GTCGTCCTGCTGGATATAGCTTCCCGAAGGGTACAACCCCTGTTGTTGCT
GGTTCTGTAACGTTTAAGGAACGGTCGAAAGGTTTTGCCCTGCTTACTGA
ACAGGATGGAATGGATGTATCAGCATAG
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protein sequence of Ggra2542.t1

>Ggra2542.t1 ID=Ggra2542.t1|Name=Ggra2542.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=276bp
MNTPQSARGGFCFENAVRNSILSSKGYKPPTARKTGTTIAGVVFEGGIVL
GADTRATAGATVFEKNCQKIHYIADNIMCCGAGTAADTEHTTQLIASKIW
LHSLATRRKPRVATALNMLKHMLFRYQGYVSAALVLGGVDFLGPHLYTVY
PHGSTDRLPFVSMGSGSLAAMAVFESKYKDGMTVEEAKQLVYEGISGGIF
NDLGSGGNVDLCIITADGKEFIRGFAKENERKYRRPAGYSFPKGTTPVVA
GSVTFKERSKGFALLTEQDGMDVSA*
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mRNA from alignment at tig00000005_pilon:663239..664224+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra2542.t1 ID=Ggra2542.t1|Name=Ggra2542.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=986bp|location=Sequence derived from alignment at tig00000005_pilon:663239..664224+ (Gracilaria gracilis GNS1m male)
ATGAACACACCTCAGTCCGCCCGCGGCGGTTTCTGTTTCGAAAATGCCGT
CCGCAACTCCATTCTTTCTTCCAAGTAAGTTCAACGCGCCGCAAACGCAC
CGATCTCGCGTGTTTCATCAATTCTGACGTGTCTCCAGAGGCTACAAGCC
GCCAACAGCCCGCAAGACCGGAACAACCATCGCCGGCGTCGTTTTTGAAG
GCGGCATAGTTCTCGGCGCCGATACGCGAGCTACTGCAGGTGCTACCGTG
TTTGAAAAGAACTGCCAGAAGATTCACTATATTGCTGATAATATCATGTG
CTGCGGGGCGGGAACAGCTGCCGATACGGAACACACAACTCAACTCATTG
CCTCCAAGATTTGGTTGCATTCGTTGGCTACTCGTCGTAAACCGCGCGTT
GCTACCGCGTTGAATATGCTCAAGCACATGCTTTTCAGGTATCAGGGTTA
TGTTTCAGCTGCGTTAGTTCTAGGCGGCGTTGATTTTCTTGGCCCTCATT
TGTACACTGTGTATCCGCACGGTACGTTTTTGTTCCAGCGTTTCGCGCAA
AGTCGTCGAGCCGATCGCAATCATTTTGTTCCTAACAACCGCTTTATGAT
GTTTTAATATTGCAGGAAGCACGGATCGTTTGCCATTCGTGTCGATGGGA
TCAGGATCTTTGGCTGCAATGGCGGTCTTTGAATCAAAATACAAGGATGG
AATGACTGTGGAAGAAGCAAAACAACTTGTGTATGAGGGTATATCTGGTG
GTATATTCAACGATTTGGGTTCTGGTGGAAACGTTGACCTTTGCATCATT
ACTGCGGATGGCAAAGAGTTTATTCGCGGCTTTGCTAAAGAAAATGAGAG
GAAGTATCGTCGTCCTGCTGGATATAGCTTCCCGAAGGGTACAACCCCTG
TTGTTGCTGGTTCTGTAACGTTTAAGGAACGGTCGAAAGGTTTTGCCCTG
CTTACTGAACAGGATGGAATGGATGTATCAGCATAG
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Coding sequence (CDS) from alignment at tig00000005_pilon:663239..664224+

>Ggra2542.t1 ID=Ggra2542.t1|Name=Ggra2542.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=828bp|location=Sequence derived from alignment at tig00000005_pilon:663239..664224+ (Gracilaria gracilis GNS1m male)
ATGAACACACCTCAGTCCGCCCGCGGCGGTTTCTGTTTCGAAAATGCCGT
CCGCAACTCCATTCTTTCTTCCAAAGGCTACAAGCCGCCAACAGCCCGCA
AGACCGGAACAACCATCGCCGGCGTCGTTTTTGAAGGCGGCATAGTTCTC
GGCGCCGATACGCGAGCTACTGCAGGTGCTACCGTGTTTGAAAAGAACTG
CCAGAAGATTCACTATATTGCTGATAATATCATGTGCTGCGGGGCGGGAA
CAGCTGCCGATACGGAACACACAACTCAACTCATTGCCTCCAAGATTTGG
TTGCATTCGTTGGCTACTCGTCGTAAACCGCGCGTTGCTACCGCGTTGAA
TATGCTCAAGCACATGCTTTTCAGGTATCAGGGTTATGTTTCAGCTGCGT
TAGTTCTAGGCGGCGTTGATTTTCTTGGCCCTCATTTGTACACTGTGTAT
CCGCACGGAAGCACGGATCGTTTGCCATTCGTGTCGATGGGATCAGGATC
TTTGGCTGCAATGGCGGTCTTTGAATCAAAATACAAGGATGGAATGACTG
TGGAAGAAGCAAAACAACTTGTGTATGAGGGTATATCTGGTGGTATATTC
AACGATTTGGGTTCTGGTGGAAACGTTGACCTTTGCATCATTACTGCGGA
TGGCAAAGAGTTTATTCGCGGCTTTGCTAAAGAAAATGAGAGGAAGTATC
GTCGTCCTGCTGGATATAGCTTCCCGAAGGGTACAACCCCTGTTGTTGCT
GGTTCTGTAACGTTTAAGGAACGGTCGAAAGGTTTTGCCCTGCTTACTGA
ACAGGATGGAATGGATGTATCAGCATAG
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