Ggra2540.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra2540.t1
Unique NameGgra2540.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length350
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000005_piloncontigtig00000005_pilon:658286..659335 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1449346.JQMO01000003_gene5402
PFAMsadh_short,adh_short_C2
Max annot lvl201174|Actinobacteria
Evalue7.8e-46
EggNOG OGsCOG1028@1|root,COG1028@2|Bacteria,2IC68@201174|Actinobacteria
DescriptionEnoyl-(Acyl carrier protein) reductase
COG categoryIQ
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra2540Ggra2540Gracilaria gracilis GNS1m malegenetig00000005_pilon 658286..659335 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2540.t1.stop1Ggra2540.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000005_pilon 658286..658288 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2540.t1.CDS1Ggra2540.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000005_pilon 658286..659335 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2540.t1.exon1Ggra2540.t1.exon1Gracilaria gracilis GNS1m maleexontig00000005_pilon 658286..659335 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2540.t1.start1Ggra2540.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000005_pilon 659333..659335 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2540.t1Ggra2540.t1Gracilaria gracilis GNS1m malepolypeptidetig00000005_pilon 658286..659335 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra2540.t1 ID=Ggra2540.t1|Name=Ggra2540.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=350bp
MPSNAHTYCAPADVPTPPSPPSPTMTNSTPLHSATKASPTVSAPPLMLPT
FQSPRQPRRQSLNIVVTGGSTGIGEAIVRVFAEAGHRVLFTYLTRRNAAE
RLQALWPHVTAAPLDQADVAGIAAFARTVCQWAGSAGVHVLVNNAALGSA
TVCRYVQQQMGSNHFAKLPAEQLPDSAVRMAKRAQNDLALMRVNALGPLW
VTDALSDALSKAASAAGRATVIFIGSVGGGSSAVFPEYCAADLMSKAAIT
YLSKHLAAQHVMDNIDVMCISPGATETEMFRQSTLANVPNVDAFVGSMPK
RRLIQPLEVARSVYWLAAESPPGIFHGSVLDASMGLAVRPGLQTENQSR*
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spliced messenger RNA

>Ggra2540.t1 ID=Ggra2540.t1|Name=Ggra2540.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1050bp|location=Sequence derived from alignment at tig00000005_pilon:658286..659335- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCGAGTAACGCTCACACCTATTGTGCGCCGGCCGATGTCCCTACTCC
GCCGTCACCCCCATCGCCTACCATGACCAACTCAACCCCACTGCACTCAG
CGACTAAGGCCTCTCCTACCGTGTCTGCTCCGCCTCTGATGTTGCCCACT
TTCCAATCGCCCCGTCAGCCCCGCCGTCAGAGTCTCAACATCGTCGTCAC
TGGCGGCTCCACTGGAATTGGCGAAGCTATTGTACGTGTGTTCGCGGAAG
CTGGCCATCGTGTGCTGTTCACTTATCTTACTCGCCGAAATGCCGCCGAG
CGCCTGCAGGCGTTGTGGCCGCATGTAACCGCAGCGCCGCTCGACCAGGC
AGACGTGGCAGGCATCGCCGCGTTTGCGCGCACCGTCTGCCAGTGGGCCG
GATCTGCTGGCGTTCACGTTTTGGTCAACAACGCGGCGCTCGGTTCTGCC
ACTGTGTGTCGCTACGTACAGCAGCAGATGGGCTCTAACCACTTTGCAAA
GCTGCCAGCAGAACAACTTCCGGACTCTGCTGTCAGAATGGCTAAGCGCG
CTCAGAACGATCTGGCTCTGATGCGAGTGAACGCGTTGGGACCTTTGTGG
GTCACTGATGCTCTTTCAGACGCGCTCAGCAAAGCCGCCAGTGCGGCTGG
TAGAGCCACGGTGATATTTATTGGCTCTGTGGGGGGAGGAAGCAGCGCCG
TGTTTCCGGAATACTGTGCCGCTGACTTAATGAGCAAGGCTGCCATTACG
TACCTTTCAAAGCATCTGGCAGCGCAGCACGTCATGGATAACATTGACGT
GATGTGTATCTCGCCGGGAGCCACGGAGACAGAAATGTTTAGACAGAGCA
CACTAGCAAACGTCCCTAACGTGGACGCTTTCGTTGGCAGCATGCCGAAG
CGGAGGCTTATTCAACCACTGGAGGTGGCAAGGAGCGTCTACTGGCTGGC
TGCCGAGAGTCCACCCGGCATTTTCCACGGCTCAGTGTTGGACGCTTCGA
TGGGATTGGCTGTCCGGCCGGGACTGCAGACAGAAAACCAGTCGCGCTAA
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protein sequence of Ggra2540.t1

>Ggra2540.t1 ID=Ggra2540.t1|Name=Ggra2540.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=350bp
MPSNAHTYCAPADVPTPPSPPSPTMTNSTPLHSATKASPTVSAPPLMLPT
FQSPRQPRRQSLNIVVTGGSTGIGEAIVRVFAEAGHRVLFTYLTRRNAAE
RLQALWPHVTAAPLDQADVAGIAAFARTVCQWAGSAGVHVLVNNAALGSA
TVCRYVQQQMGSNHFAKLPAEQLPDSAVRMAKRAQNDLALMRVNALGPLW
VTDALSDALSKAASAAGRATVIFIGSVGGGSSAVFPEYCAADLMSKAAIT
YLSKHLAAQHVMDNIDVMCISPGATETEMFRQSTLANVPNVDAFVGSMPK
RRLIQPLEVARSVYWLAAESPPGIFHGSVLDASMGLAVRPGLQTENQSR*
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mRNA from alignment at tig00000005_pilon:658286..659335-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra2540.t1 ID=Ggra2540.t1|Name=Ggra2540.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1050bp|location=Sequence derived from alignment at tig00000005_pilon:658286..659335- (Gracilaria gracilis GNS1m male)
ATGCCGAGTAACGCTCACACCTATTGTGCGCCGGCCGATGTCCCTACTCC
GCCGTCACCCCCATCGCCTACCATGACCAACTCAACCCCACTGCACTCAG
CGACTAAGGCCTCTCCTACCGTGTCTGCTCCGCCTCTGATGTTGCCCACT
TTCCAATCGCCCCGTCAGCCCCGCCGTCAGAGTCTCAACATCGTCGTCAC
TGGCGGCTCCACTGGAATTGGCGAAGCTATTGTACGTGTGTTCGCGGAAG
CTGGCCATCGTGTGCTGTTCACTTATCTTACTCGCCGAAATGCCGCCGAG
CGCCTGCAGGCGTTGTGGCCGCATGTAACCGCAGCGCCGCTCGACCAGGC
AGACGTGGCAGGCATCGCCGCGTTTGCGCGCACCGTCTGCCAGTGGGCCG
GATCTGCTGGCGTTCACGTTTTGGTCAACAACGCGGCGCTCGGTTCTGCC
ACTGTGTGTCGCTACGTACAGCAGCAGATGGGCTCTAACCACTTTGCAAA
GCTGCCAGCAGAACAACTTCCGGACTCTGCTGTCAGAATGGCTAAGCGCG
CTCAGAACGATCTGGCTCTGATGCGAGTGAACGCGTTGGGACCTTTGTGG
GTCACTGATGCTCTTTCAGACGCGCTCAGCAAAGCCGCCAGTGCGGCTGG
TAGAGCCACGGTGATATTTATTGGCTCTGTGGGGGGAGGAAGCAGCGCCG
TGTTTCCGGAATACTGTGCCGCTGACTTAATGAGCAAGGCTGCCATTACG
TACCTTTCAAAGCATCTGGCAGCGCAGCACGTCATGGATAACATTGACGT
GATGTGTATCTCGCCGGGAGCCACGGAGACAGAAATGTTTAGACAGAGCA
CACTAGCAAACGTCCCTAACGTGGACGCTTTCGTTGGCAGCATGCCGAAG
CGGAGGCTTATTCAACCACTGGAGGTGGCAAGGAGCGTCTACTGGCTGGC
TGCCGAGAGTCCACCCGGCATTTTCCACGGCTCAGTGTTGGACGCTTCGA
TGGGATTGGCTGTCCGGCCGGGACTGCAGACAGAAAACCAGTCGCGCTAA
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Coding sequence (CDS) from alignment at tig00000005_pilon:658286..659335-

>Ggra2540.t1 ID=Ggra2540.t1|Name=Ggra2540.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1050bp|location=Sequence derived from alignment at tig00000005_pilon:658286..659335- (Gracilaria gracilis GNS1m male)
ATGCCGAGTAACGCTCACACCTATTGTGCGCCGGCCGATGTCCCTACTCC
GCCGTCACCCCCATCGCCTACCATGACCAACTCAACCCCACTGCACTCAG
CGACTAAGGCCTCTCCTACCGTGTCTGCTCCGCCTCTGATGTTGCCCACT
TTCCAATCGCCCCGTCAGCCCCGCCGTCAGAGTCTCAACATCGTCGTCAC
TGGCGGCTCCACTGGAATTGGCGAAGCTATTGTACGTGTGTTCGCGGAAG
CTGGCCATCGTGTGCTGTTCACTTATCTTACTCGCCGAAATGCCGCCGAG
CGCCTGCAGGCGTTGTGGCCGCATGTAACCGCAGCGCCGCTCGACCAGGC
AGACGTGGCAGGCATCGCCGCGTTTGCGCGCACCGTCTGCCAGTGGGCCG
GATCTGCTGGCGTTCACGTTTTGGTCAACAACGCGGCGCTCGGTTCTGCC
ACTGTGTGTCGCTACGTACAGCAGCAGATGGGCTCTAACCACTTTGCAAA
GCTGCCAGCAGAACAACTTCCGGACTCTGCTGTCAGAATGGCTAAGCGCG
CTCAGAACGATCTGGCTCTGATGCGAGTGAACGCGTTGGGACCTTTGTGG
GTCACTGATGCTCTTTCAGACGCGCTCAGCAAAGCCGCCAGTGCGGCTGG
TAGAGCCACGGTGATATTTATTGGCTCTGTGGGGGGAGGAAGCAGCGCCG
TGTTTCCGGAATACTGTGCCGCTGACTTAATGAGCAAGGCTGCCATTACG
TACCTTTCAAAGCATCTGGCAGCGCAGCACGTCATGGATAACATTGACGT
GATGTGTATCTCGCCGGGAGCCACGGAGACAGAAATGTTTAGACAGAGCA
CACTAGCAAACGTCCCTAACGTGGACGCTTTCGTTGGCAGCATGCCGAAG
CGGAGGCTTATTCAACCACTGGAGGTGGCAAGGAGCGTCTACTGGCTGGC
TGCCGAGAGTCCACCCGGCATTTTCCACGGCTCAGTGTTGGACGCTTCGA
TGGGATTGGCTGTCCGGCCGGGACTGCAGACAGAAAACCAGTCGCGCTAA
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