Ggra2521.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra2521.t1
Unique NameGgra2521.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length175
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000005_piloncontigtig00000005_pilon:572481..573005 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog3988.XP_002534177.1
PFAMsSnoaL_3,UVR
Max annot lvl35493|Streptophyta
Evalue3.36e-21
EggNOG OGs2CMBB@1|root,2QPVH@2759|Eukaryota,37PWJ@33090|Viridiplantae,3G71A@35493|Streptophyta,4JJGB@91835|fabids
DescriptionDomain of unknown function (DUF4440)
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra2521Ggra2521Gracilaria gracilis GNS1m malegenetig00000005_pilon 572481..573005 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2521.t1.stop1Ggra2521.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000005_pilon 572481..572483 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2521.t1.CDS1Ggra2521.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000005_pilon 572481..573005 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2521.t1.exon1Ggra2521.t1.exon1Gracilaria gracilis GNS1m maleexontig00000005_pilon 572481..573005 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2521.t1.start1Ggra2521.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000005_pilon 573003..573005 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2521.t1Ggra2521.t1Gracilaria gracilis GNS1m malepolypeptidetig00000005_pilon 572481..573005 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra2521.t1 ID=Ggra2521.t1|Name=Ggra2521.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=175bp
MAFVSATAWSCPRRLGGTATWPLPSREAARCSLSPAASGGDEDGNDDEAL
VLRANRRFYDALRRGDAQQMSAVWMRSDSVCCALPMSALVVGCDAVDALW
KRVFARARPLDVRVDHERAVVRRNVAWVVCEQTVQYASTLSVVAGVRVAT
NVFQRRRAQWLLVHHHASPVITAD*
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spliced messenger RNA

>Ggra2521.t1 ID=Ggra2521.t1|Name=Ggra2521.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=525bp|location=Sequence derived from alignment at tig00000005_pilon:572481..573005- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGTTCGTGAGCGCGACGGCGTGGAGCTGTCCGCGGCGACTCGGTGG
GACGGCGACGTGGCCGCTGCCGTCGCGCGAGGCGGCGCGCTGCTCGCTGT
CGCCCGCGGCGAGCGGCGGCGACGAGGACGGCAACGACGACGAGGCGCTG
GTGCTGCGCGCGAACCGGCGCTTCTACGACGCGCTGCGGCGCGGCGACGC
GCAGCAGATGAGCGCGGTGTGGATGCGCTCGGACTCGGTGTGCTGCGCGC
TGCCCATGAGCGCGCTGGTGGTGGGGTGCGACGCGGTGGACGCGCTGTGG
AAGCGCGTGTTTGCGCGCGCGCGGCCGCTGGACGTGCGCGTCGACCACGA
GCGCGCGGTGGTGCGGCGGAACGTGGCGTGGGTGGTGTGCGAGCAGACGG
TGCAGTACGCGTCCACGCTGTCGGTGGTGGCGGGCGTGCGGGTGGCCACC
AACGTGTTTCAGCGACGCCGCGCGCAGTGGTTGTTGGTTCATCATCACGC
CAGTCCTGTTATTACAGCCGATTAA
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protein sequence of Ggra2521.t1

>Ggra2521.t1 ID=Ggra2521.t1|Name=Ggra2521.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=175bp
MAFVSATAWSCPRRLGGTATWPLPSREAARCSLSPAASGGDEDGNDDEAL
VLRANRRFYDALRRGDAQQMSAVWMRSDSVCCALPMSALVVGCDAVDALW
KRVFARARPLDVRVDHERAVVRRNVAWVVCEQTVQYASTLSVVAGVRVAT
NVFQRRRAQWLLVHHHASPVITAD*
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mRNA from alignment at tig00000005_pilon:572481..573005-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra2521.t1 ID=Ggra2521.t1|Name=Ggra2521.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=525bp|location=Sequence derived from alignment at tig00000005_pilon:572481..573005- (Gracilaria gracilis GNS1m male)
ATGGCGTTCGTGAGCGCGACGGCGTGGAGCTGTCCGCGGCGACTCGGTGG
GACGGCGACGTGGCCGCTGCCGTCGCGCGAGGCGGCGCGCTGCTCGCTGT
CGCCCGCGGCGAGCGGCGGCGACGAGGACGGCAACGACGACGAGGCGCTG
GTGCTGCGCGCGAACCGGCGCTTCTACGACGCGCTGCGGCGCGGCGACGC
GCAGCAGATGAGCGCGGTGTGGATGCGCTCGGACTCGGTGTGCTGCGCGC
TGCCCATGAGCGCGCTGGTGGTGGGGTGCGACGCGGTGGACGCGCTGTGG
AAGCGCGTGTTTGCGCGCGCGCGGCCGCTGGACGTGCGCGTCGACCACGA
GCGCGCGGTGGTGCGGCGGAACGTGGCGTGGGTGGTGTGCGAGCAGACGG
TGCAGTACGCGTCCACGCTGTCGGTGGTGGCGGGCGTGCGGGTGGCCACC
AACGTGTTTCAGCGACGCCGCGCGCAGTGGTTGTTGGTTCATCATCACGC
CAGTCCTGTTATTACAGCCGATTAA
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Coding sequence (CDS) from alignment at tig00000005_pilon:572481..573005-

>Ggra2521.t1 ID=Ggra2521.t1|Name=Ggra2521.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=525bp|location=Sequence derived from alignment at tig00000005_pilon:572481..573005- (Gracilaria gracilis GNS1m male)
ATGGCGTTCGTGAGCGCGACGGCGTGGAGCTGTCCGCGGCGACTCGGTGG
GACGGCGACGTGGCCGCTGCCGTCGCGCGAGGCGGCGCGCTGCTCGCTGT
CGCCCGCGGCGAGCGGCGGCGACGAGGACGGCAACGACGACGAGGCGCTG
GTGCTGCGCGCGAACCGGCGCTTCTACGACGCGCTGCGGCGCGGCGACGC
GCAGCAGATGAGCGCGGTGTGGATGCGCTCGGACTCGGTGTGCTGCGCGC
TGCCCATGAGCGCGCTGGTGGTGGGGTGCGACGCGGTGGACGCGCTGTGG
AAGCGCGTGTTTGCGCGCGCGCGGCCGCTGGACGTGCGCGTCGACCACGA
GCGCGCGGTGGTGCGGCGGAACGTGGCGTGGGTGGTGTGCGAGCAGACGG
TGCAGTACGCGTCCACGCTGTCGGTGGTGGCGGGCGTGCGGGTGGCCACC
AACGTGTTTCAGCGACGCCGCGCGCAGTGGTTGTTGGTTCATCATCACGC
CAGTCCTGTTATTACAGCCGATTAA
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