Ggra2518.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra2518.t1
Unique NameGgra2518.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length104
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000005_piloncontigtig00000005_pilon:557462..557773 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog102125.Xen7305DRAFT_00010840
Preferred namehli3
PFAMsChloroa_b-bind
Max annot lvl1117|Cyanobacteria
Evalue5.45e-08
EggNOG OGs2E3E5@1|root,32Z0N@2|Bacteria,1G90H@1117|Cyanobacteria,3VKNS@52604|Pleurocapsales
DescriptionPFAM Chlorophyll A-B binding protein
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra2518Ggra2518Gracilaria gracilis GNS1m malegenetig00000005_pilon 557462..557773 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2518.t1.start1Ggra2518.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000005_pilon 557462..557464 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2518.t1.CDS1Ggra2518.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000005_pilon 557462..557773 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2518.t1.exon1Ggra2518.t1.exon1Gracilaria gracilis GNS1m maleexontig00000005_pilon 557462..557773 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2518.t1.stop1Ggra2518.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000005_pilon 557771..557773 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2518.t1Ggra2518.t1Gracilaria gracilis GNS1m malepolypeptidetig00000005_pilon 557462..557773 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra2518.t1 ID=Ggra2518.t1|Name=Ggra2518.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=104bp
MAFITATPILARPTTALNTTSFSTRRAVAVAPARRAAVRMVSEEPRTEKI
PQGFTGFSEVLNGRAAMMGFTLAVVTEAITGKGILGQVGSIFEIVNLASA
LGN*
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spliced messenger RNA

>Ggra2518.t1 ID=Ggra2518.t1|Name=Ggra2518.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=312bp|location=Sequence derived from alignment at tig00000005_pilon:557462..557773+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCTTCATCACCGCAACCCCCATCCTCGCTCGCCCGACCACCGCCCT
CAACACCACCTCGTTCTCCACACGTCGTGCCGTTGCCGTGGCCCCTGCCC
GTCGCGCGGCCGTTCGAATGGTCAGTGAAGAGCCCAGGACTGAGAAGATT
CCCCAAGGATTCACTGGGTTCTCAGAGGTTCTCAATGGAAGAGCCGCTAT
GATGGGCTTCACGCTCGCCGTTGTCACCGAGGCTATCACTGGAAAGGGTA
TCCTTGGACAGGTTGGATCCATCTTCGAGATTGTGAACTTGGCTTCTGCC
CTCGGCAACTAA
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protein sequence of Ggra2518.t1

>Ggra2518.t1 ID=Ggra2518.t1|Name=Ggra2518.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=104bp
MAFITATPILARPTTALNTTSFSTRRAVAVAPARRAAVRMVSEEPRTEKI
PQGFTGFSEVLNGRAAMMGFTLAVVTEAITGKGILGQVGSIFEIVNLASA
LGN*
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mRNA from alignment at tig00000005_pilon:557462..557773+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra2518.t1 ID=Ggra2518.t1|Name=Ggra2518.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=312bp|location=Sequence derived from alignment at tig00000005_pilon:557462..557773+ (Gracilaria gracilis GNS1m male)
ATGGCCTTCATCACCGCAACCCCCATCCTCGCTCGCCCGACCACCGCCCT
CAACACCACCTCGTTCTCCACACGTCGTGCCGTTGCCGTGGCCCCTGCCC
GTCGCGCGGCCGTTCGAATGGTCAGTGAAGAGCCCAGGACTGAGAAGATT
CCCCAAGGATTCACTGGGTTCTCAGAGGTTCTCAATGGAAGAGCCGCTAT
GATGGGCTTCACGCTCGCCGTTGTCACCGAGGCTATCACTGGAAAGGGTA
TCCTTGGACAGGTTGGATCCATCTTCGAGATTGTGAACTTGGCTTCTGCC
CTCGGCAACTAA
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Coding sequence (CDS) from alignment at tig00000005_pilon:557462..557773+

>Ggra2518.t1 ID=Ggra2518.t1|Name=Ggra2518.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=312bp|location=Sequence derived from alignment at tig00000005_pilon:557462..557773+ (Gracilaria gracilis GNS1m male)
ATGGCCTTCATCACCGCAACCCCCATCCTCGCTCGCCCGACCACCGCCCT
CAACACCACCTCGTTCTCCACACGTCGTGCCGTTGCCGTGGCCCCTGCCC
GTCGCGCGGCCGTTCGAATGGTCAGTGAAGAGCCCAGGACTGAGAAGATT
CCCCAAGGATTCACTGGGTTCTCAGAGGTTCTCAATGGAAGAGCCGCTAT
GATGGGCTTCACGCTCGCCGTTGTCACCGAGGCTATCACTGGAAAGGGTA
TCCTTGGACAGGTTGGATCCATCTTCGAGATTGTGAACTTGGCTTCTGCC
CTCGGCAACTAA
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