Ggra2506.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra2506.t1
Unique NameGgra2506.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length370
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000005_piloncontigtig00000005_pilon:519932..521041 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog88036.EFJ11866
PFAMsUbiA
Max annot lvl35493|Streptophyta
KEGG rclassRC01840,RC02895
KEGG koko:K09833
KEGG ReactionR07500,R10708
KEGG Pathwayko00130,ko01100,ko01110,map00130,map01100,map01110
KEGG ModuleM00112
Evalue3.25e-65
EggNOG OGsCOG0382@1|root,2R0I3@2759|Eukaryota,37KT1@33090|Viridiplantae,3GDHT@35493|Streptophyta
EC2.5.1.115,2.5.1.116
Descriptionhomogentisate phytyltransferase 1
COG categoryH
BRITEko00000,ko00001,ko00002,ko01000,ko01006
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra2506Ggra2506Gracilaria gracilis GNS1m malegenetig00000005_pilon 519932..521041 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2506.t1.stop1Ggra2506.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000005_pilon 519932..519934 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2506.t1.CDS1Ggra2506.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000005_pilon 519932..521041 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2506.t1.exon1Ggra2506.t1.exon1Gracilaria gracilis GNS1m maleexontig00000005_pilon 519932..521041 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2506.t1.start1Ggra2506.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000005_pilon 521039..521041 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2506.t1Ggra2506.t1Gracilaria gracilis GNS1m malepolypeptidetig00000005_pilon 519932..521041 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra2506.t1 ID=Ggra2506.t1|Name=Ggra2506.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=370bp
MPSYTAFVSSFIKAGCNRKLSSHVFHSRKRYVHPPSPARSTIPRSSASER
TQDVSKSDPSQDGTPPVDLRSPNPSLLRITRSLWAFSRPHTIYGTICSVV
SVSLLAAFYSPRPHPFPVFLTAFVPALLLNIFIVGLNQYFDIAIDRVNKP
YLPLASGALTKRDAALIIITSLVSGLLFCFAPLATPALRAVLIGSTVLGT
VYSVPPFRLKRFALLASILILTVRGLLVNVGFFLHSSASTVVPSTILFAS
AFFTFFGIVIALLKDVPDIRGDMIFGIRTFSVRLGAQKVFNCCVGILVAM
FLTASAFYYKMAHSIFGLAMAACHIIVAAVLWRRSRMVSTKAPKQLYEYY
MLSWKMFYMEYVLLPMIAL*
back to top

spliced messenger RNA

>Ggra2506.t1 ID=Ggra2506.t1|Name=Ggra2506.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1110bp|location=Sequence derived from alignment at tig00000005_pilon:519932..521041- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCGTCATACACAGCATTCGTTTCCAGCTTCATTAAGGCCGGATGTAA
TCGAAAATTGTCGTCTCATGTTTTTCATTCACGGAAGCGTTACGTGCATC
CACCATCTCCGGCGAGGAGCACCATACCAAGATCAAGCGCAAGTGAAAGA
ACCCAAGATGTATCAAAGTCCGACCCTTCACAAGATGGAACCCCACCAGT
AGATCTACGGTCTCCGAATCCGAGCCTCTTACGAATCACACGAAGTCTTT
GGGCATTTTCTCGGCCGCATACCATATATGGTACCATCTGTTCTGTTGTT
TCTGTATCTCTTCTGGCCGCTTTCTATTCCCCCAGACCTCATCCGTTCCC
GGTTTTTCTCACAGCTTTCGTTCCGGCACTGCTTCTGAACATTTTTATAG
TTGGTCTCAATCAATACTTCGATATCGCTATCGATCGTGTCAACAAACCA
TACCTGCCTCTCGCTTCAGGGGCGCTCACAAAGAGAGATGCCGCTCTGAT
AATTATTACGTCGCTCGTATCTGGTCTGTTGTTTTGTTTCGCACCTCTTG
CGACGCCGGCCTTGCGCGCAGTTCTTATCGGATCTACCGTCCTGGGGACA
GTGTACTCTGTACCACCATTCCGATTGAAGCGGTTTGCATTGTTGGCTTC
TATCTTGATTTTGACAGTTCGTGGATTACTGGTGAACGTCGGCTTCTTTT
TGCATAGTTCAGCAAGCACTGTTGTGCCATCTACAATATTATTCGCTTCT
GCCTTCTTTACCTTTTTCGGAATTGTAATTGCGTTGTTGAAGGATGTCCC
AGACATTCGTGGTGACATGATATTCGGCATAAGAACATTTTCTGTACGAC
TCGGAGCACAAAAAGTGTTCAATTGCTGCGTGGGGATTTTGGTGGCTATG
TTTCTAACGGCGTCAGCATTCTATTACAAGATGGCCCATTCTATTTTTGG
TCTCGCTATGGCAGCCTGTCATATCATCGTAGCGGCTGTCTTGTGGCGTC
GGAGCAGGATGGTGTCAACAAAAGCGCCAAAGCAACTCTATGAATACTAC
ATGTTGTCGTGGAAAATGTTTTATATGGAATATGTGTTGCTTCCCATGAT
AGCGTTGTAA
back to top

protein sequence of Ggra2506.t1

>Ggra2506.t1 ID=Ggra2506.t1|Name=Ggra2506.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=370bp
MPSYTAFVSSFIKAGCNRKLSSHVFHSRKRYVHPPSPARSTIPRSSASER
TQDVSKSDPSQDGTPPVDLRSPNPSLLRITRSLWAFSRPHTIYGTICSVV
SVSLLAAFYSPRPHPFPVFLTAFVPALLLNIFIVGLNQYFDIAIDRVNKP
YLPLASGALTKRDAALIIITSLVSGLLFCFAPLATPALRAVLIGSTVLGT
VYSVPPFRLKRFALLASILILTVRGLLVNVGFFLHSSASTVVPSTILFAS
AFFTFFGIVIALLKDVPDIRGDMIFGIRTFSVRLGAQKVFNCCVGILVAM
FLTASAFYYKMAHSIFGLAMAACHIIVAAVLWRRSRMVSTKAPKQLYEYY
MLSWKMFYMEYVLLPMIAL*
back to top

mRNA from alignment at tig00000005_pilon:519932..521041-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra2506.t1 ID=Ggra2506.t1|Name=Ggra2506.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1110bp|location=Sequence derived from alignment at tig00000005_pilon:519932..521041- (Gracilaria gracilis GNS1m male)
ATGCCGTCATACACAGCATTCGTTTCCAGCTTCATTAAGGCCGGATGTAA
TCGAAAATTGTCGTCTCATGTTTTTCATTCACGGAAGCGTTACGTGCATC
CACCATCTCCGGCGAGGAGCACCATACCAAGATCAAGCGCAAGTGAAAGA
ACCCAAGATGTATCAAAGTCCGACCCTTCACAAGATGGAACCCCACCAGT
AGATCTACGGTCTCCGAATCCGAGCCTCTTACGAATCACACGAAGTCTTT
GGGCATTTTCTCGGCCGCATACCATATATGGTACCATCTGTTCTGTTGTT
TCTGTATCTCTTCTGGCCGCTTTCTATTCCCCCAGACCTCATCCGTTCCC
GGTTTTTCTCACAGCTTTCGTTCCGGCACTGCTTCTGAACATTTTTATAG
TTGGTCTCAATCAATACTTCGATATCGCTATCGATCGTGTCAACAAACCA
TACCTGCCTCTCGCTTCAGGGGCGCTCACAAAGAGAGATGCCGCTCTGAT
AATTATTACGTCGCTCGTATCTGGTCTGTTGTTTTGTTTCGCACCTCTTG
CGACGCCGGCCTTGCGCGCAGTTCTTATCGGATCTACCGTCCTGGGGACA
GTGTACTCTGTACCACCATTCCGATTGAAGCGGTTTGCATTGTTGGCTTC
TATCTTGATTTTGACAGTTCGTGGATTACTGGTGAACGTCGGCTTCTTTT
TGCATAGTTCAGCAAGCACTGTTGTGCCATCTACAATATTATTCGCTTCT
GCCTTCTTTACCTTTTTCGGAATTGTAATTGCGTTGTTGAAGGATGTCCC
AGACATTCGTGGTGACATGATATTCGGCATAAGAACATTTTCTGTACGAC
TCGGAGCACAAAAAGTGTTCAATTGCTGCGTGGGGATTTTGGTGGCTATG
TTTCTAACGGCGTCAGCATTCTATTACAAGATGGCCCATTCTATTTTTGG
TCTCGCTATGGCAGCCTGTCATATCATCGTAGCGGCTGTCTTGTGGCGTC
GGAGCAGGATGGTGTCAACAAAAGCGCCAAAGCAACTCTATGAATACTAC
ATGTTGTCGTGGAAAATGTTTTATATGGAATATGTGTTGCTTCCCATGAT
AGCGTTGTAA
back to top

Coding sequence (CDS) from alignment at tig00000005_pilon:519932..521041-

>Ggra2506.t1 ID=Ggra2506.t1|Name=Ggra2506.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1110bp|location=Sequence derived from alignment at tig00000005_pilon:519932..521041- (Gracilaria gracilis GNS1m male)
ATGCCGTCATACACAGCATTCGTTTCCAGCTTCATTAAGGCCGGATGTAA
TCGAAAATTGTCGTCTCATGTTTTTCATTCACGGAAGCGTTACGTGCATC
CACCATCTCCGGCGAGGAGCACCATACCAAGATCAAGCGCAAGTGAAAGA
ACCCAAGATGTATCAAAGTCCGACCCTTCACAAGATGGAACCCCACCAGT
AGATCTACGGTCTCCGAATCCGAGCCTCTTACGAATCACACGAAGTCTTT
GGGCATTTTCTCGGCCGCATACCATATATGGTACCATCTGTTCTGTTGTT
TCTGTATCTCTTCTGGCCGCTTTCTATTCCCCCAGACCTCATCCGTTCCC
GGTTTTTCTCACAGCTTTCGTTCCGGCACTGCTTCTGAACATTTTTATAG
TTGGTCTCAATCAATACTTCGATATCGCTATCGATCGTGTCAACAAACCA
TACCTGCCTCTCGCTTCAGGGGCGCTCACAAAGAGAGATGCCGCTCTGAT
AATTATTACGTCGCTCGTATCTGGTCTGTTGTTTTGTTTCGCACCTCTTG
CGACGCCGGCCTTGCGCGCAGTTCTTATCGGATCTACCGTCCTGGGGACA
GTGTACTCTGTACCACCATTCCGATTGAAGCGGTTTGCATTGTTGGCTTC
TATCTTGATTTTGACAGTTCGTGGATTACTGGTGAACGTCGGCTTCTTTT
TGCATAGTTCAGCAAGCACTGTTGTGCCATCTACAATATTATTCGCTTCT
GCCTTCTTTACCTTTTTCGGAATTGTAATTGCGTTGTTGAAGGATGTCCC
AGACATTCGTGGTGACATGATATTCGGCATAAGAACATTTTCTGTACGAC
TCGGAGCACAAAAAGTGTTCAATTGCTGCGTGGGGATTTTGGTGGCTATG
TTTCTAACGGCGTCAGCATTCTATTACAAGATGGCCCATTCTATTTTTGG
TCTCGCTATGGCAGCCTGTCATATCATCGTAGCGGCTGTCTTGTGGCGTC
GGAGCAGGATGGTGTCAACAAAAGCGCCAAAGCAACTCTATGAATACTAC
ATGTTGTCGTGGAAAATGTTTTATATGGAATATGTGTTGCTTCCCATGAT
AGCGTTGTAA
back to top