Ggra2501.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra2501.t1
Unique NameGgra2501.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length190
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000005_piloncontigtig00000005_pilon:509429..509998 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog118173.KB235914_gene880
PFAMsUma2
Max annot lvl1117|Cyanobacteria
Evalue9.23e-49
EggNOG OGsCOG4636@1|root,COG4636@2|Bacteria,1G3X3@1117|Cyanobacteria,1HAJQ@1150|Oscillatoriales
DescriptionPutative restriction endonuclease
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra2501Ggra2501Gracilaria gracilis GNS1m malegenetig00000005_pilon 509429..509998 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2501.t1.stop1Ggra2501.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000005_pilon 509429..509431 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2501.t1.CDS1Ggra2501.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000005_pilon 509429..509998 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2501.t1.exon1Ggra2501.t1.exon1Gracilaria gracilis GNS1m maleexontig00000005_pilon 509429..509998 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2501.t1.start1Ggra2501.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000005_pilon 509996..509998 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2501.t1Ggra2501.t1Gracilaria gracilis GNS1m malepolypeptidetig00000005_pilon 509429..509998 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra2501.t1 ID=Ggra2501.t1|Name=Ggra2501.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=190bp
MALSSSVAENNDLVCWTVDDYHDLIQTGFLDDRRVELIHGMLLAMAPQSP
KHFGTVWLLNDTLLKQLRNHVHVRMAGPITLSDSEPEPDIAVVSGDVNDY
SERHPSPAEVFFVAEVSQANLRKDSTTKFKLYASEGIQEYWIVDIMQRNV
RVLRNPEGNCYRHDETVSSGRIAPAAFPDCRVNVAEVFT*
back to top

spliced messenger RNA

>Ggra2501.t1 ID=Ggra2501.t1|Name=Ggra2501.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=570bp|location=Sequence derived from alignment at tig00000005_pilon:509429..509998- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGCTTTCGAGCTCAGTAGCTGAAAACAATGACCTTGTGTGTTGGAC
TGTCGACGACTATCACGATTTGATTCAAACTGGCTTTCTGGACGACCGTC
GCGTCGAACTCATCCATGGAATGCTTCTCGCCATGGCTCCCCAATCACCG
AAGCATTTCGGAACCGTATGGTTACTCAACGATACACTTTTAAAACAACT
CCGCAACCACGTGCACGTTCGCATGGCCGGTCCGATTACACTCAGTGACT
CGGAACCGGAGCCGGACATCGCTGTTGTGTCGGGAGACGTCAACGATTAC
TCCGAACGTCATCCCTCACCAGCTGAAGTCTTCTTTGTAGCCGAAGTATC
CCAGGCCAACCTCCGCAAGGACAGCACAACGAAATTTAAGCTGTACGCTT
CCGAAGGTATTCAAGAATATTGGATTGTCGATATCATGCAGCGTAACGTG
CGGGTCCTTCGAAACCCTGAAGGAAATTGTTACAGACATGATGAAACCGT
CTCGAGTGGCCGCATTGCCCCGGCTGCCTTTCCAGACTGTCGGGTAAATG
TTGCCGAGGTGTTTACTTGA
back to top

protein sequence of Ggra2501.t1

>Ggra2501.t1 ID=Ggra2501.t1|Name=Ggra2501.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=190bp
MALSSSVAENNDLVCWTVDDYHDLIQTGFLDDRRVELIHGMLLAMAPQSP
KHFGTVWLLNDTLLKQLRNHVHVRMAGPITLSDSEPEPDIAVVSGDVNDY
SERHPSPAEVFFVAEVSQANLRKDSTTKFKLYASEGIQEYWIVDIMQRNV
RVLRNPEGNCYRHDETVSSGRIAPAAFPDCRVNVAEVFT*
back to top

mRNA from alignment at tig00000005_pilon:509429..509998-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra2501.t1 ID=Ggra2501.t1|Name=Ggra2501.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=570bp|location=Sequence derived from alignment at tig00000005_pilon:509429..509998- (Gracilaria gracilis GNS1m male)
ATGGCGCTTTCGAGCTCAGTAGCTGAAAACAATGACCTTGTGTGTTGGAC
TGTCGACGACTATCACGATTTGATTCAAACTGGCTTTCTGGACGACCGTC
GCGTCGAACTCATCCATGGAATGCTTCTCGCCATGGCTCCCCAATCACCG
AAGCATTTCGGAACCGTATGGTTACTCAACGATACACTTTTAAAACAACT
CCGCAACCACGTGCACGTTCGCATGGCCGGTCCGATTACACTCAGTGACT
CGGAACCGGAGCCGGACATCGCTGTTGTGTCGGGAGACGTCAACGATTAC
TCCGAACGTCATCCCTCACCAGCTGAAGTCTTCTTTGTAGCCGAAGTATC
CCAGGCCAACCTCCGCAAGGACAGCACAACGAAATTTAAGCTGTACGCTT
CCGAAGGTATTCAAGAATATTGGATTGTCGATATCATGCAGCGTAACGTG
CGGGTCCTTCGAAACCCTGAAGGAAATTGTTACAGACATGATGAAACCGT
CTCGAGTGGCCGCATTGCCCCGGCTGCCTTTCCAGACTGTCGGGTAAATG
TTGCCGAGGTGTTTACTTGA
back to top

Coding sequence (CDS) from alignment at tig00000005_pilon:509429..509998-

>Ggra2501.t1 ID=Ggra2501.t1|Name=Ggra2501.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=570bp|location=Sequence derived from alignment at tig00000005_pilon:509429..509998- (Gracilaria gracilis GNS1m male)
ATGGCGCTTTCGAGCTCAGTAGCTGAAAACAATGACCTTGTGTGTTGGAC
TGTCGACGACTATCACGATTTGATTCAAACTGGCTTTCTGGACGACCGTC
GCGTCGAACTCATCCATGGAATGCTTCTCGCCATGGCTCCCCAATCACCG
AAGCATTTCGGAACCGTATGGTTACTCAACGATACACTTTTAAAACAACT
CCGCAACCACGTGCACGTTCGCATGGCCGGTCCGATTACACTCAGTGACT
CGGAACCGGAGCCGGACATCGCTGTTGTGTCGGGAGACGTCAACGATTAC
TCCGAACGTCATCCCTCACCAGCTGAAGTCTTCTTTGTAGCCGAAGTATC
CCAGGCCAACCTCCGCAAGGACAGCACAACGAAATTTAAGCTGTACGCTT
CCGAAGGTATTCAAGAATATTGGATTGTCGATATCATGCAGCGTAACGTG
CGGGTCCTTCGAAACCCTGAAGGAAATTGTTACAGACATGATGAAACCGT
CTCGAGTGGCCGCATTGCCCCGGCTGCCTTTCCAGACTGTCGGGTAAATG
TTGCCGAGGTGTTTACTTGA
back to top