Ggra2500.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra2500.t1
Unique Name	Ggra2500.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	482

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000005_pilon	contig	tig00000005_pilon:505983..507428 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	242159.ABP00687
PFAMs	Ammonium_transp
Max annot lvl	3041\|Chlorophyta
KEGG ko	ko:K03320
KEGG TC	1.A.11
Evalue	4.6e-142
EggNOG OGs	COG0004@1\|root,KOG0682@2759\|Eukaryota,37HQP@33090\|Viridiplantae,34J8I@3041\|Chlorophyta
Description	Ammonium transporter
COG category	P
BRITE	ko00000,ko02000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra2500	Ggra2500	Gracilaria gracilis GNS1m male	gene	tig00000005_pilon 505983..507428 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2500.t1.start1	Ggra2500.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000005_pilon 505983..505985 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2500.t1.CDS1	Ggra2500.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000005_pilon 505983..507428 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2500.t1.exon1	Ggra2500.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000005_pilon 505983..507428 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2500.t1.stop1	Ggra2500.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000005_pilon 507426..507428 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2500.t1	Ggra2500.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000005_pilon 505983..507428 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000005_pilon:505983..507428+
coding sequence from alignment at tig00000005_pilon:505983..507428+

mRNA sequence

>Ggra2500.t1 ID=Ggra2500.t1|Name=Ggra2500.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=482bp
MQVADFFFQADGQNHFNASKAATDIISLFDIVGDHASAIDNMFVLFSGYL
VFLMQCGFAMLTAGSVRTKNTKNVLLKNVLDACVGALAYYLFGWAFAYGP
GGNAQGFIGAGNFALSSYDGTPFSDFTSFFFQWAFAATAATIVSGSVAER
TSFYAYMGYAFFLTSFVYPVVSHWVWGGGFLSTLFGQGMIDFAGCSVVHM
VGGFAGLAGAIIVGPRFGRFNSDGKPMPLPGHSATLATLGTFLLWFGWYG
FNPGSALGITGGLFETVQRCAVTTTLAAAVGGLTTLVLKKVLDHFFDLLS
VLNGILAGLVAITASCAFVDVWAAIIIGFIGAVVYVGSATLLLAFKIDDP
LEAFPIHGATGFWGCLAAGFFNRKAAQEVAGFDNPGAGVIDGSGRLLLTN
FVGCLIIIIWVLVLLIPFFLILKVAGILRISREEELIGNDISKHGGVAYP
DDAVDVAADAARKDMDSLAMDPGAPTDVDKV*

spliced messenger RNA

>Ggra2500.t1 ID=Ggra2500.t1|Name=Ggra2500.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1446bp|location=Sequence derived from alignment at tig00000005_pilon:505983..507428+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAGGTCGCTGATTTCTTTTTCCAGGCTGATGGCCAAAACCATTTCAA
TGCCTCCAAAGCCGCCACCGACATCATTTCTTTGTTTGACATTGTCGGAG
ACCATGCCTCCGCCATTGACAACATGTTCGTTCTTTTCTCAGGCTATCTT
GTCTTCCTTATGCAATGTGGGTTTGCTATGCTCACTGCTGGGTCTGTCCG
TACCAAGAACACCAAGAACGTTCTTCTGAAGAATGTTTTAGATGCCTGCG
TCGGTGCTCTCGCCTACTATCTCTTCGGTTGGGCTTTCGCTTACGGTCCG
GGCGGAAATGCTCAGGGCTTCATTGGTGCTGGCAATTTTGCTCTCTCCAG
CTATGACGGAACCCCATTCAGTGACTTCACCAGCTTCTTCTTTCAGTGGG
CCTTTGCCGCCACTGCAGCCACTATTGTGTCTGGTTCTGTGGCTGAACGT
ACTTCCTTCTATGCCTACATGGGATATGCTTTCTTCCTCACTTCCTTCGT
CTACCCAGTTGTGTCCCACTGGGTCTGGGGCGGTGGATTCCTCTCCACTC
TCTTCGGCCAAGGAATGATTGACTTTGCTGGTTGCTCTGTCGTCCATATG
GTTGGTGGTTTTGCCGGTCTGGCTGGTGCTATCATTGTCGGCCCGCGTTT
TGGACGTTTCAACTCTGATGGAAAGCCCATGCCTTTGCCTGGTCACTCTG
CCACCCTTGCCACTCTCGGTACTTTCCTTCTCTGGTTCGGATGGTACGGT
TTCAACCCGGGGTCTGCTCTTGGAATCACTGGTGGACTCTTCGAGACCGT
TCAGCGTTGCGCCGTGACTACCACTCTCGCCGCTGCCGTTGGTGGCCTTA
CCACTCTCGTTCTGAAGAAGGTTCTGGATCACTTCTTTGATCTTCTCTCA
GTGCTTAATGGAATCCTCGCCGGTCTTGTCGCCATCACTGCCTCATGTGC
TTTTGTTGACGTGTGGGCGGCAATTATCATTGGCTTTATTGGTGCTGTTG
TCTACGTTGGCTCTGCCACGCTCCTTCTTGCGTTCAAGATCGATGATCCT
CTCGAGGCCTTCCCCATTCACGGTGCTACTGGTTTCTGGGGATGCCTTGC
TGCTGGTTTCTTCAACCGCAAGGCAGCTCAAGAAGTTGCTGGTTTCGACA
ACCCTGGTGCTGGTGTCATTGATGGTTCTGGAAGGCTTTTGTTGACCAAC
TTCGTCGGCTGCCTTATCATTATCATCTGGGTCCTTGTTCTCCTTATTCC
GTTTTTCCTTATCCTCAAGGTGGCCGGTATCCTACGTATCTCCCGTGAGG
AGGAACTTATTGGAAACGATATCTCCAAGCACGGTGGTGTCGCCTATCCG
GATGATGCTGTCGATGTTGCCGCTGATGCTGCCAGAAAGGACATGGACTC
TTTGGCTATGGATCCGGGAGCTCCGACAGATGTTGATAAGGTCTAA

protein sequence of Ggra2500.t1

>Ggra2500.t1 ID=Ggra2500.t1|Name=Ggra2500.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=482bp
MQVADFFFQADGQNHFNASKAATDIISLFDIVGDHASAIDNMFVLFSGYL
VFLMQCGFAMLTAGSVRTKNTKNVLLKNVLDACVGALAYYLFGWAFAYGP
GGNAQGFIGAGNFALSSYDGTPFSDFTSFFFQWAFAATAATIVSGSVAER
TSFYAYMGYAFFLTSFVYPVVSHWVWGGGFLSTLFGQGMIDFAGCSVVHM
VGGFAGLAGAIIVGPRFGRFNSDGKPMPLPGHSATLATLGTFLLWFGWYG
FNPGSALGITGGLFETVQRCAVTTTLAAAVGGLTTLVLKKVLDHFFDLLS
VLNGILAGLVAITASCAFVDVWAAIIIGFIGAVVYVGSATLLLAFKIDDP
LEAFPIHGATGFWGCLAAGFFNRKAAQEVAGFDNPGAGVIDGSGRLLLTN
FVGCLIIIIWVLVLLIPFFLILKVAGILRISREEELIGNDISKHGGVAYP
DDAVDVAADAARKDMDSLAMDPGAPTDVDKV*

mRNA from alignment at tig00000005_pilon:505983..507428+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra2500.t1 ID=Ggra2500.t1|Name=Ggra2500.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1446bp|location=Sequence derived from alignment at tig00000005_pilon:505983..507428+ (Gracilaria gracilis GNS1m male)
ATGCAGGTCGCTGATTTCTTTTTCCAGGCTGATGGCCAAAACCATTTCAA
TGCCTCCAAAGCCGCCACCGACATCATTTCTTTGTTTGACATTGTCGGAG
ACCATGCCTCCGCCATTGACAACATGTTCGTTCTTTTCTCAGGCTATCTT
GTCTTCCTTATGCAATGTGGGTTTGCTATGCTCACTGCTGGGTCTGTCCG
TACCAAGAACACCAAGAACGTTCTTCTGAAGAATGTTTTAGATGCCTGCG
TCGGTGCTCTCGCCTACTATCTCTTCGGTTGGGCTTTCGCTTACGGTCCG
GGCGGAAATGCTCAGGGCTTCATTGGTGCTGGCAATTTTGCTCTCTCCAG
CTATGACGGAACCCCATTCAGTGACTTCACCAGCTTCTTCTTTCAGTGGG
CCTTTGCCGCCACTGCAGCCACTATTGTGTCTGGTTCTGTGGCTGAACGT
ACTTCCTTCTATGCCTACATGGGATATGCTTTCTTCCTCACTTCCTTCGT
CTACCCAGTTGTGTCCCACTGGGTCTGGGGCGGTGGATTCCTCTCCACTC
TCTTCGGCCAAGGAATGATTGACTTTGCTGGTTGCTCTGTCGTCCATATG
GTTGGTGGTTTTGCCGGTCTGGCTGGTGCTATCATTGTCGGCCCGCGTTT
TGGACGTTTCAACTCTGATGGAAAGCCCATGCCTTTGCCTGGTCACTCTG
CCACCCTTGCCACTCTCGGTACTTTCCTTCTCTGGTTCGGATGGTACGGT
TTCAACCCGGGGTCTGCTCTTGGAATCACTGGTGGACTCTTCGAGACCGT
TCAGCGTTGCGCCGTGACTACCACTCTCGCCGCTGCCGTTGGTGGCCTTA
CCACTCTCGTTCTGAAGAAGGTTCTGGATCACTTCTTTGATCTTCTCTCA
GTGCTTAATGGAATCCTCGCCGGTCTTGTCGCCATCACTGCCTCATGTGC
TTTTGTTGACGTGTGGGCGGCAATTATCATTGGCTTTATTGGTGCTGTTG
TCTACGTTGGCTCTGCCACGCTCCTTCTTGCGTTCAAGATCGATGATCCT
CTCGAGGCCTTCCCCATTCACGGTGCTACTGGTTTCTGGGGATGCCTTGC
TGCTGGTTTCTTCAACCGCAAGGCAGCTCAAGAAGTTGCTGGTTTCGACA
ACCCTGGTGCTGGTGTCATTGATGGTTCTGGAAGGCTTTTGTTGACCAAC
TTCGTCGGCTGCCTTATCATTATCATCTGGGTCCTTGTTCTCCTTATTCC
GTTTTTCCTTATCCTCAAGGTGGCCGGTATCCTACGTATCTCCCGTGAGG
AGGAACTTATTGGAAACGATATCTCCAAGCACGGTGGTGTCGCCTATCCG
GATGATGCTGTCGATGTTGCCGCTGATGCTGCCAGAAAGGACATGGACTC
TTTGGCTATGGATCCGGGAGCTCCGACAGATGTTGATAAGGTCTAA

Coding sequence (CDS) from alignment at tig00000005_pilon:505983..507428+

>Ggra2500.t1 ID=Ggra2500.t1|Name=Ggra2500.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1446bp|location=Sequence derived from alignment at tig00000005_pilon:505983..507428+ (Gracilaria gracilis GNS1m male)
ATGCAGGTCGCTGATTTCTTTTTCCAGGCTGATGGCCAAAACCATTTCAA
TGCCTCCAAAGCCGCCACCGACATCATTTCTTTGTTTGACATTGTCGGAG
ACCATGCCTCCGCCATTGACAACATGTTCGTTCTTTTCTCAGGCTATCTT
GTCTTCCTTATGCAATGTGGGTTTGCTATGCTCACTGCTGGGTCTGTCCG
TACCAAGAACACCAAGAACGTTCTTCTGAAGAATGTTTTAGATGCCTGCG
TCGGTGCTCTCGCCTACTATCTCTTCGGTTGGGCTTTCGCTTACGGTCCG
GGCGGAAATGCTCAGGGCTTCATTGGTGCTGGCAATTTTGCTCTCTCCAG
CTATGACGGAACCCCATTCAGTGACTTCACCAGCTTCTTCTTTCAGTGGG
CCTTTGCCGCCACTGCAGCCACTATTGTGTCTGGTTCTGTGGCTGAACGT
ACTTCCTTCTATGCCTACATGGGATATGCTTTCTTCCTCACTTCCTTCGT
CTACCCAGTTGTGTCCCACTGGGTCTGGGGCGGTGGATTCCTCTCCACTC
TCTTCGGCCAAGGAATGATTGACTTTGCTGGTTGCTCTGTCGTCCATATG
GTTGGTGGTTTTGCCGGTCTGGCTGGTGCTATCATTGTCGGCCCGCGTTT
TGGACGTTTCAACTCTGATGGAAAGCCCATGCCTTTGCCTGGTCACTCTG
CCACCCTTGCCACTCTCGGTACTTTCCTTCTCTGGTTCGGATGGTACGGT
TTCAACCCGGGGTCTGCTCTTGGAATCACTGGTGGACTCTTCGAGACCGT
TCAGCGTTGCGCCGTGACTACCACTCTCGCCGCTGCCGTTGGTGGCCTTA
CCACTCTCGTTCTGAAGAAGGTTCTGGATCACTTCTTTGATCTTCTCTCA
GTGCTTAATGGAATCCTCGCCGGTCTTGTCGCCATCACTGCCTCATGTGC
TTTTGTTGACGTGTGGGCGGCAATTATCATTGGCTTTATTGGTGCTGTTG
TCTACGTTGGCTCTGCCACGCTCCTTCTTGCGTTCAAGATCGATGATCCT
CTCGAGGCCTTCCCCATTCACGGTGCTACTGGTTTCTGGGGATGCCTTGC
TGCTGGTTTCTTCAACCGCAAGGCAGCTCAAGAAGTTGCTGGTTTCGACA
ACCCTGGTGCTGGTGTCATTGATGGTTCTGGAAGGCTTTTGTTGACCAAC
TTCGTCGGCTGCCTTATCATTATCATCTGGGTCCTTGTTCTCCTTATTCC
GTTTTTCCTTATCCTCAAGGTGGCCGGTATCCTACGTATCTCCCGTGAGG
AGGAACTTATTGGAAACGATATCTCCAAGCACGGTGGTGTCGCCTATCCG
GATGATGCTGTCGATGTTGCCGCTGATGCTGCCAGAAAGGACATGGACTC
TTTGGCTATGGATCCGGGAGCTCCGACAGATGTTGATAAGGTCTAA