Ggra2499.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra2499.t1
Unique NameGgra2499.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length280
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000005_piloncontigtig00000005_pilon:503872..504711 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog45157.CMO077CT
PFAMsDUF1995
Max annot lvl2759|Eukaryota
Evalue1.42e-27
EggNOG OGs28J60@1|root,2QRI3@2759|Eukaryota
DescriptionDomain of unknown function (DUF1995)
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra2499Ggra2499Gracilaria gracilis GNS1m malegenetig00000005_pilon 503872..504711 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2499.t1.start1Ggra2499.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000005_pilon 503872..503874 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2499.t1.CDS1Ggra2499.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000005_pilon 503872..504711 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2499.t1.exon1Ggra2499.t1.exon1Gracilaria gracilis GNS1m maleexontig00000005_pilon 503872..504711 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2499.t1.stop1Ggra2499.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000005_pilon 504709..504711 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2499.t1Ggra2499.t1Gracilaria gracilis GNS1m malepolypeptidetig00000005_pilon 503872..504711 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra2499.t1 ID=Ggra2499.t1|Name=Ggra2499.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=280bp
MAFVGVLPLGVQPRSGRGCCSASRRRGPMACQQPPRVESNAAPMPSSLSD
ACQRAGGAVRAAVEAGRMRLTVELDPSRGDETYTLLKRSIPIARQVCEAM
RGDDDGYVLMLLPDAGAAALARRDMGDDMRLRLEGMDERLLDTDAAAVAV
VAPRASEVEALRDVAERALEAGVPLVVVNADLVDMGVTGLSLNARRLRKQ
LLDSFEAGFVLRLVGGGVLLREWPLAWDLWEEHGDGFRWKTSFDVAPSGD
QMEDALFGDSGGRSVMDKLRGFLRVYMRG*
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spliced messenger RNA

>Ggra2499.t1 ID=Ggra2499.t1|Name=Ggra2499.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=840bp|location=Sequence derived from alignment at tig00000005_pilon:503872..504711+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGTTTGTCGGAGTGCTGCCGCTCGGCGTGCAACCGCGCAGCGGACG
CGGCTGCTGCAGCGCTTCGCGGCGGCGCGGGCCGATGGCGTGCCAGCAGC
CGCCGCGCGTCGAATCGAACGCGGCGCCTATGCCGTCCTCACTGAGCGAT
GCGTGTCAGCGCGCGGGAGGCGCCGTGCGCGCCGCCGTGGAGGCTGGGCG
CATGCGGCTGACGGTGGAGCTGGATCCATCTCGGGGCGATGAGACGTACA
CGCTGCTCAAACGGTCGATCCCGATTGCGCGCCAGGTGTGCGAGGCAATG
CGCGGCGATGACGATGGGTACGTGCTGATGCTACTACCGGACGCAGGCGC
GGCGGCGCTGGCGAGGAGGGACATGGGCGACGACATGCGGCTGCGGCTGG
AGGGCATGGACGAGCGTTTGTTGGACACGGACgcggcggcagtggcggtg
gtggcgccgcgcgccagcgaggtggaggcgCTGCGCGACGTGGCAGAGCG
CGCATTGGAGGCTGGCGTGCCGCTGGTGGTGGTCAACGCCGACCTGGTGG
ACATGGGCGTGACGGGGCTTTCGCTCAACGCGCGGCGGCTGCGAAAGCAG
CTGCTGGACTCGTTCGAGGCGGGCTTCGTGCTGCGGCTGGTGGGCGGCGG
CGTGCTGCTTCGCGAGTGGCCTCTGGCGTGGGACCTGTGGGAGGAGCACG
GCGACGGCTTCCGGTGGAAGACCAGCTTCGACGTGGCGCCCAGCGGCGAC
CAGATGGAGGACGCGCTGTTCGGCGACAGCGGCGGGCGCAGTGTGATGGA
CAAGCTGCGCGGCTTTCTCCGCGTGTACATGCGTGGCTAG
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protein sequence of Ggra2499.t1

>Ggra2499.t1 ID=Ggra2499.t1|Name=Ggra2499.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=280bp
MAFVGVLPLGVQPRSGRGCCSASRRRGPMACQQPPRVESNAAPMPSSLSD
ACQRAGGAVRAAVEAGRMRLTVELDPSRGDETYTLLKRSIPIARQVCEAM
RGDDDGYVLMLLPDAGAAALARRDMGDDMRLRLEGMDERLLDTDAAAVAV
VAPRASEVEALRDVAERALEAGVPLVVVNADLVDMGVTGLSLNARRLRKQ
LLDSFEAGFVLRLVGGGVLLREWPLAWDLWEEHGDGFRWKTSFDVAPSGD
QMEDALFGDSGGRSVMDKLRGFLRVYMRG*
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mRNA from alignment at tig00000005_pilon:503872..504711+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra2499.t1 ID=Ggra2499.t1|Name=Ggra2499.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=840bp|location=Sequence derived from alignment at tig00000005_pilon:503872..504711+ (Gracilaria gracilis GNS1m male)
ATGGCGTTTGTCGGAGTGCTGCCGCTCGGCGTGCAACCGCGCAGCGGACG
CGGCTGCTGCAGCGCTTCGCGGCGGCGCGGGCCGATGGCGTGCCAGCAGC
CGCCGCGCGTCGAATCGAACGCGGCGCCTATGCCGTCCTCACTGAGCGAT
GCGTGTCAGCGCGCGGGAGGCGCCGTGCGCGCCGCCGTGGAGGCTGGGCG
CATGCGGCTGACGGTGGAGCTGGATCCATCTCGGGGCGATGAGACGTACA
CGCTGCTCAAACGGTCGATCCCGATTGCGCGCCAGGTGTGCGAGGCAATG
CGCGGCGATGACGATGGGTACGTGCTGATGCTACTACCGGACGCAGGCGC
GGCGGCGCTGGCGAGGAGGGACATGGGCGACGACATGCGGCTGCGGCTGG
AGGGCATGGACGAGCGTTTGTTGGACACGGACgcggcggcagtggcggtg
gtggcgccgcgcgccagcgaggtggaggcgCTGCGCGACGTGGCAGAGCG
CGCATTGGAGGCTGGCGTGCCGCTGGTGGTGGTCAACGCCGACCTGGTGG
ACATGGGCGTGACGGGGCTTTCGCTCAACGCGCGGCGGCTGCGAAAGCAG
CTGCTGGACTCGTTCGAGGCGGGCTTCGTGCTGCGGCTGGTGGGCGGCGG
CGTGCTGCTTCGCGAGTGGCCTCTGGCGTGGGACCTGTGGGAGGAGCACG
GCGACGGCTTCCGGTGGAAGACCAGCTTCGACGTGGCGCCCAGCGGCGAC
CAGATGGAGGACGCGCTGTTCGGCGACAGCGGCGGGCGCAGTGTGATGGA
CAAGCTGCGCGGCTTTCTCCGCGTGTACATGCGTGGCTAG
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Coding sequence (CDS) from alignment at tig00000005_pilon:503872..504711+

>Ggra2499.t1 ID=Ggra2499.t1|Name=Ggra2499.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=840bp|location=Sequence derived from alignment at tig00000005_pilon:503872..504711+ (Gracilaria gracilis GNS1m male)
ATGGCGTTTGTCGGAGTGCTGCCGCTCGGCGTGCAACCGCGCAGCGGACG
CGGCTGCTGCAGCGCTTCGCGGCGGCGCGGGCCGATGGCGTGCCAGCAGC
CGCCGCGCGTCGAATCGAACGCGGCGCCTATGCCGTCCTCACTGAGCGAT
GCGTGTCAGCGCGCGGGAGGCGCCGTGCGCGCCGCCGTGGAGGCTGGGCG
CATGCGGCTGACGGTGGAGCTGGATCCATCTCGGGGCGATGAGACGTACA
CGCTGCTCAAACGGTCGATCCCGATTGCGCGCCAGGTGTGCGAGGCAATG
CGCGGCGATGACGATGGGTACGTGCTGATGCTACTACCGGACGCAGGCGC
GGCGGCGCTGGCGAGGAGGGACATGGGCGACGACATGCGGCTGCGGCTGG
AGGGCATGGACGAGCGTTTGTTGGACACGGACgcggcggcagtggcggtg
gtggcgccgcgcgccagcgaggtggaggcgCTGCGCGACGTGGCAGAGCG
CGCATTGGAGGCTGGCGTGCCGCTGGTGGTGGTCAACGCCGACCTGGTGG
ACATGGGCGTGACGGGGCTTTCGCTCAACGCGCGGCGGCTGCGAAAGCAG
CTGCTGGACTCGTTCGAGGCGGGCTTCGTGCTGCGGCTGGTGGGCGGCGG
CGTGCTGCTTCGCGAGTGGCCTCTGGCGTGGGACCTGTGGGAGGAGCACG
GCGACGGCTTCCGGTGGAAGACCAGCTTCGACGTGGCGCCCAGCGGCGAC
CAGATGGAGGACGCGCTGTTCGGCGACAGCGGCGGGCGCAGTGTGATGGA
CAAGCTGCGCGGCTTTCTCCGCGTGTACATGCGTGGCTAG
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