Ggra2498.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra2498.t1
Unique NameGgra2498.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length534
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000005_piloncontigtig00000005_pilon:501927..503528 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005708833.1
Preferred namecreC
PFAMsWD40
Max annot lvl2759|Eukaryota
KEGG koko:K03115
KEGG Pathwayko03008,ko04064,ko04137,ko04139,ko04310,ko04520,ko04712,ko05162,ko05168,ko05169,map03008,map04064,map04137,map04139,map04310,map04520,map04712,map05162,map05168,map05169
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0006355,GO:0006464,GO:0006508,GO:0006807,GO:0007154,GO:0007584,GO:0008150,GO:0008152,GO:0009605,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0009991,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0016579,GO:0019219,GO:0019222,GO:0019538,GO:0030428,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031667,GO:0031668,GO:0031669,GO:0031670,GO:0032153,GO:0032991,GO:0036211,GO:0042221,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044464,GO:0045013,GO:0045892,GO:0045934,GO:0045990,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051172,GO:0051252,GO:0051253,GO:0051286,GO:0051716,GO:0060255,GO:0061984,GO:0061985,GO:0065007,GO:0070646,GO:0070647,GO:0070887,GO:0071496,GO:0071704,GO:0080090,GO:1901564,GO:1902679,GO:1903506,GO:1903507,GO:2000112,GO:2000113,GO:2001141
Evalue2.25e-58
EggNOG OGsCOG2319@1|root,KOG2394@2759|Eukaryota
Descriptioncarbon catabolite repression
COG categoryKLT
BRITEko00000,ko00001,ko03009
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra2498Ggra2498Gracilaria gracilis GNS1m malegenetig00000005_pilon 501927..503528 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2498.t1.stop1Ggra2498.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000005_pilon 501927..501929 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2498.t1.CDS1Ggra2498.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000005_pilon 501927..503528 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2498.t1.exon1Ggra2498.t1.exon1Gracilaria gracilis GNS1m maleexontig00000005_pilon 501927..503528 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2498.t1.start1Ggra2498.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000005_pilon 503526..503528 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2498.t1Ggra2498.t1Gracilaria gracilis GNS1m malepolypeptidetig00000005_pilon 501927..503528 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra2498.t1 ID=Ggra2498.t1|Name=Ggra2498.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=534bp
MSALLSPPRPVRTRFKVPGEGSYELSADVAPPTPRPPPPPPAKPAPPPPP
GPLGLPSVTKLAFATTDVAVRPSDHPEQESIFSFRKLTGLTSLTAKFAAD
DEPPPPPSSAASNAPPFASGVLAYNAADALVLLDVANASEELFSLTPRTT
PTAHAITAIEGLRLLVGTASGEVVYYPDLSERRRAATSPPQSHVYNKDGS
LNSSRVVAVKWLPHSTHKFLSLHLDGAVIVYDDRMKPSVIRPDDNTRRLS
NDERPDRERVRVGVHEILVTNVKGKRSNPATIWHIGRTSLTDCAFATTTN
DSTVSLATTARDGYLRIIDFSNQLITIAFRSYFGALLCVAWSPDGKYVAT
GGEDDLVSIFSPSEERLIARLEGHTSWVSAVAWDHACKRQGTYRLGSAGQ
DAKLLLWDFDLETLHHPQRNSMTRRRSYRETNGVSNGERRQSKMSRLRGH
TQEPEPQAPLIVPAPGRAEVPVVEPVVAHVAHGEPLTDVWFLDCGVFTAD
AVGGVKMWSRPPQHAVPELSLGKGGRRGAGDLD*
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spliced messenger RNA

>Ggra2498.t1 ID=Ggra2498.t1|Name=Ggra2498.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1602bp|location=Sequence derived from alignment at tig00000005_pilon:501927..503528- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCGGCGCTGCTGTCGCCGCCGCGTCCCGTTCGCACGCGCTTCAAGGT
GCCCGGCGAGGGGAGCTACGAGCTGTCGGCCGACGTCGCGCCGCCCACGC
CGCGCCCTCCTCCGCCGCCGCCCGCCAAGCCCGCGCCGCCGCCGCCGCCT
GGCCCACTCGGCCTCCCATCCGTCACCAAGCTCGCCTTCGCCACCACAGA
TGTCGCCGTCCGACCGTCCGACCATCCCGAACAGGAGTCCATCTTCTCCT
TTCGCAAGCTCACCGGTCTCACCTCCCTCACCGCAAAGTTCGCCGCAGAC
GATGAACCCCCTCCTCCGCCCTCCTCCGCCGCCTCCAATGCGCCTCCCTT
CGCCTCTGGCGTGCTCGCGTACAACGCAGCAGACGCCCTCGTGCTTCTCG
ATGTCGCCAACGCCTCGGAAGAGCTCTTCTCCCTCACTCCTCGCACCACT
CCTACAGCGCACGCTATAACTGCTATTGAGGGCCTTCGTCTGCTCGTCGG
CACCGCCTCGGGAGAGGTTGTATACTACCCCGATCTGTCCGAACGCCGTA
GGGCTGCCACGTCCCCACCGCAATCTCATGTGTACAACAAAGACGGATCC
CTTAACTCATCGCGTGTCGTTGCAGTCAAGTGGCTCCCTCACTCCACCCA
CAAGTTTCTTTCTCTTCATCTAGACGGCGCCGTCATCGTATACGACGACC
GCATGAAGCCGTCTGTCATTCGTCCAGATGACAACACCAGAAGGCTCAGC
AACGACGAAAGGCCCGACCGAGAGCGCGTTAGAGTCGGTGTCCACGAGAT
TCTTGTTACAAACGTCAAAGGCAAGCGCAGCAACCCAGCCACCATATGGC
ACATTGGACGCACCTCGCTAACTGACTGCGCGTTTGCTACTACCACTAAT
GATTCTACCGTATCACTGGCTACTACCGCAAGAGATGGTTACTTGCGTAT
CATTGACTTTAGCAACCAGCTTATTACAATAGCGTTTCGATCTTATTTCG
GTGCCCTGTTGTGCGTCGCATGGAGTCCAGATGGAAAGTATGTTGCGACG
GGTGGCGAGGACGACCTTGTGTCAATATTTTCTCCTAGCGAAGAACGGCT
CATCGCGCGACTTGAAGGCCATACCTCATGGGTTAGCGCTGTCGCCTGGG
ATCATGCGTGCAAACGACAGGGTACGTATCGACTGGGTAGTGCCGGCCAG
GATGCCAAACTTTTGTTATGGGATTTTGATCTCGAAACTCTCCACCATCC
TCAAAGAAACTCCATGACTAGAAGGCGATCTTACAGGGAAACCAACGGGG
TTTCTAATGGTGAGAGAAGACAGAGCAAGATGTCCAGATTACGAGGGCAT
ACACAAGAACCGGAGCCTCAAGCTCCGCTTATAGTCCCAGCTCCAGGAAG
GGCGGAGGTCCCAGTCGTGGAGCCTGTTGTCGCGCACGTTGCACATGGAG
AACCTCTTACAGACGTCTGGTTTTTGGACTGCGGAGTATTCACGGCAGAC
GCTGTCGGTGGGGTAAAAATGTGGAGTCGCCCTCCGCAGCACGCAGTTCC
AGAGCTTTCACTTGGAAAGGGTGGTAGAAGAGGTGCTGGTGATTTGGATT
AA
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protein sequence of Ggra2498.t1

>Ggra2498.t1 ID=Ggra2498.t1|Name=Ggra2498.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=534bp
MSALLSPPRPVRTRFKVPGEGSYELSADVAPPTPRPPPPPPAKPAPPPPP
GPLGLPSVTKLAFATTDVAVRPSDHPEQESIFSFRKLTGLTSLTAKFAAD
DEPPPPPSSAASNAPPFASGVLAYNAADALVLLDVANASEELFSLTPRTT
PTAHAITAIEGLRLLVGTASGEVVYYPDLSERRRAATSPPQSHVYNKDGS
LNSSRVVAVKWLPHSTHKFLSLHLDGAVIVYDDRMKPSVIRPDDNTRRLS
NDERPDRERVRVGVHEILVTNVKGKRSNPATIWHIGRTSLTDCAFATTTN
DSTVSLATTARDGYLRIIDFSNQLITIAFRSYFGALLCVAWSPDGKYVAT
GGEDDLVSIFSPSEERLIARLEGHTSWVSAVAWDHACKRQGTYRLGSAGQ
DAKLLLWDFDLETLHHPQRNSMTRRRSYRETNGVSNGERRQSKMSRLRGH
TQEPEPQAPLIVPAPGRAEVPVVEPVVAHVAHGEPLTDVWFLDCGVFTAD
AVGGVKMWSRPPQHAVPELSLGKGGRRGAGDLD*
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mRNA from alignment at tig00000005_pilon:501927..503528-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra2498.t1 ID=Ggra2498.t1|Name=Ggra2498.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1602bp|location=Sequence derived from alignment at tig00000005_pilon:501927..503528- (Gracilaria gracilis GNS1m male)
ATGTCGGCGCTGCTGTCGCCGCCGCGTCCCGTTCGCACGCGCTTCAAGGT
GCCCGGCGAGGGGAGCTACGAGCTGTCGGCCGACGTCGCGCCGCCCACGC
CGCGCCCTCCTCCGCCGCCGCCCGCCAAGCCCGCGCCGCCGCCGCCGCCT
GGCCCACTCGGCCTCCCATCCGTCACCAAGCTCGCCTTCGCCACCACAGA
TGTCGCCGTCCGACCGTCCGACCATCCCGAACAGGAGTCCATCTTCTCCT
TTCGCAAGCTCACCGGTCTCACCTCCCTCACCGCAAAGTTCGCCGCAGAC
GATGAACCCCCTCCTCCGCCCTCCTCCGCCGCCTCCAATGCGCCTCCCTT
CGCCTCTGGCGTGCTCGCGTACAACGCAGCAGACGCCCTCGTGCTTCTCG
ATGTCGCCAACGCCTCGGAAGAGCTCTTCTCCCTCACTCCTCGCACCACT
CCTACAGCGCACGCTATAACTGCTATTGAGGGCCTTCGTCTGCTCGTCGG
CACCGCCTCGGGAGAGGTTGTATACTACCCCGATCTGTCCGAACGCCGTA
GGGCTGCCACGTCCCCACCGCAATCTCATGTGTACAACAAAGACGGATCC
CTTAACTCATCGCGTGTCGTTGCAGTCAAGTGGCTCCCTCACTCCACCCA
CAAGTTTCTTTCTCTTCATCTAGACGGCGCCGTCATCGTATACGACGACC
GCATGAAGCCGTCTGTCATTCGTCCAGATGACAACACCAGAAGGCTCAGC
AACGACGAAAGGCCCGACCGAGAGCGCGTTAGAGTCGGTGTCCACGAGAT
TCTTGTTACAAACGTCAAAGGCAAGCGCAGCAACCCAGCCACCATATGGC
ACATTGGACGCACCTCGCTAACTGACTGCGCGTTTGCTACTACCACTAAT
GATTCTACCGTATCACTGGCTACTACCGCAAGAGATGGTTACTTGCGTAT
CATTGACTTTAGCAACCAGCTTATTACAATAGCGTTTCGATCTTATTTCG
GTGCCCTGTTGTGCGTCGCATGGAGTCCAGATGGAAAGTATGTTGCGACG
GGTGGCGAGGACGACCTTGTGTCAATATTTTCTCCTAGCGAAGAACGGCT
CATCGCGCGACTTGAAGGCCATACCTCATGGGTTAGCGCTGTCGCCTGGG
ATCATGCGTGCAAACGACAGGGTACGTATCGACTGGGTAGTGCCGGCCAG
GATGCCAAACTTTTGTTATGGGATTTTGATCTCGAAACTCTCCACCATCC
TCAAAGAAACTCCATGACTAGAAGGCGATCTTACAGGGAAACCAACGGGG
TTTCTAATGGTGAGAGAAGACAGAGCAAGATGTCCAGATTACGAGGGCAT
ACACAAGAACCGGAGCCTCAAGCTCCGCTTATAGTCCCAGCTCCAGGAAG
GGCGGAGGTCCCAGTCGTGGAGCCTGTTGTCGCGCACGTTGCACATGGAG
AACCTCTTACAGACGTCTGGTTTTTGGACTGCGGAGTATTCACGGCAGAC
GCTGTCGGTGGGGTAAAAATGTGGAGTCGCCCTCCGCAGCACGCAGTTCC
AGAGCTTTCACTTGGAAAGGGTGGTAGAAGAGGTGCTGGTGATTTGGATT
AA
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Coding sequence (CDS) from alignment at tig00000005_pilon:501927..503528-

>Ggra2498.t1 ID=Ggra2498.t1|Name=Ggra2498.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1602bp|location=Sequence derived from alignment at tig00000005_pilon:501927..503528- (Gracilaria gracilis GNS1m male)
ATGTCGGCGCTGCTGTCGCCGCCGCGTCCCGTTCGCACGCGCTTCAAGGT
GCCCGGCGAGGGGAGCTACGAGCTGTCGGCCGACGTCGCGCCGCCCACGC
CGCGCCCTCCTCCGCCGCCGCCCGCCAAGCCCGCGCCGCCGCCGCCGCCT
GGCCCACTCGGCCTCCCATCCGTCACCAAGCTCGCCTTCGCCACCACAGA
TGTCGCCGTCCGACCGTCCGACCATCCCGAACAGGAGTCCATCTTCTCCT
TTCGCAAGCTCACCGGTCTCACCTCCCTCACCGCAAAGTTCGCCGCAGAC
GATGAACCCCCTCCTCCGCCCTCCTCCGCCGCCTCCAATGCGCCTCCCTT
CGCCTCTGGCGTGCTCGCGTACAACGCAGCAGACGCCCTCGTGCTTCTCG
ATGTCGCCAACGCCTCGGAAGAGCTCTTCTCCCTCACTCCTCGCACCACT
CCTACAGCGCACGCTATAACTGCTATTGAGGGCCTTCGTCTGCTCGTCGG
CACCGCCTCGGGAGAGGTTGTATACTACCCCGATCTGTCCGAACGCCGTA
GGGCTGCCACGTCCCCACCGCAATCTCATGTGTACAACAAAGACGGATCC
CTTAACTCATCGCGTGTCGTTGCAGTCAAGTGGCTCCCTCACTCCACCCA
CAAGTTTCTTTCTCTTCATCTAGACGGCGCCGTCATCGTATACGACGACC
GCATGAAGCCGTCTGTCATTCGTCCAGATGACAACACCAGAAGGCTCAGC
AACGACGAAAGGCCCGACCGAGAGCGCGTTAGAGTCGGTGTCCACGAGAT
TCTTGTTACAAACGTCAAAGGCAAGCGCAGCAACCCAGCCACCATATGGC
ACATTGGACGCACCTCGCTAACTGACTGCGCGTTTGCTACTACCACTAAT
GATTCTACCGTATCACTGGCTACTACCGCAAGAGATGGTTACTTGCGTAT
CATTGACTTTAGCAACCAGCTTATTACAATAGCGTTTCGATCTTATTTCG
GTGCCCTGTTGTGCGTCGCATGGAGTCCAGATGGAAAGTATGTTGCGACG
GGTGGCGAGGACGACCTTGTGTCAATATTTTCTCCTAGCGAAGAACGGCT
CATCGCGCGACTTGAAGGCCATACCTCATGGGTTAGCGCTGTCGCCTGGG
ATCATGCGTGCAAACGACAGGGTACGTATCGACTGGGTAGTGCCGGCCAG
GATGCCAAACTTTTGTTATGGGATTTTGATCTCGAAACTCTCCACCATCC
TCAAAGAAACTCCATGACTAGAAGGCGATCTTACAGGGAAACCAACGGGG
TTTCTAATGGTGAGAGAAGACAGAGCAAGATGTCCAGATTACGAGGGCAT
ACACAAGAACCGGAGCCTCAAGCTCCGCTTATAGTCCCAGCTCCAGGAAG
GGCGGAGGTCCCAGTCGTGGAGCCTGTTGTCGCGCACGTTGCACATGGAG
AACCTCTTACAGACGTCTGGTTTTTGGACTGCGGAGTATTCACGGCAGAC
GCTGTCGGTGGGGTAAAAATGTGGAGTCGCCCTCCGCAGCACGCAGTTCC
AGAGCTTTCACTTGGAAAGGGTGGTAGAAGAGGTGCTGGTGATTTGGATT
AA
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