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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Seed ortholog | 130081.XP_005704397.1 |
| PFAMs | ABC_membrane,ABC_tran |
| Max annot lvl | 2759|Eukaryota |
| KEGG ko | ko:K05662,ko:K05663 |
| KEGG TC | 3.A.1.210 |
| KEGG Pathway | ko02010,map02010 |
| Evalue | 2.32e-181 |
| EggNOG OGs | COG5265@1|root,KOG0057@2759|Eukaryota |
| Description | ATP-binding cassette subfamily B |
| COG category | O |
| BRITE | ko00000,ko00001,ko02000 |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following start_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| Ggra2496.t1.start1 | Ggra2496.t1.start1 | Gracilaria gracilis GNS1m male | start_codon | tig00000005_pilon 496906..496908 + |
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following intron feature(s) are a part of this mRNA:
The following stop_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| Ggra2496.t1.stop1 | Ggra2496.t1.stop1 | Gracilaria gracilis GNS1m male | stop_codon | tig00000005_pilon 499489..499491 + |
Sequences
The following sequences are available for this feature:
mRNA sequence >Ggra2496.t1 ID=Ggra2496.t1|Name=Ggra2496.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=756bp MSRLVACFPIRCQVHAPSNLSLRSALFVAPSPVLTRGLLSCSPRDHLNFR TNSRQFTLKRSLRSFRRSLQTVCTASVNQKKAPATPYAVPKFSTGLAQSS LRALADYYSTLCRTQPFIARRLVLSIISIIVSKLIGVTVPFFYKRIIDNL MAHSAKASAETFGLAVSAILFHGLTRLLSSISHEMRSCVFAKAGQRVGRS ITAASFAHLQSLEMAFHNSAQTGAITRVVDRGTRSVLTIFRGLIFAFMPS LFELLLVCGVLFHRFSIWYVAVVLIMFAAFISWTLYINDKLGRVRRDMNM VENDASAKLTDSLINVEAVKAFNNADFELSRYDKVLMQYEKLAISNEWQY AALNIGQGAIYTTGLTLILLRAAQGVVAGTVTVGSVVMLATMVQQLWVPL NFLGWQYREVKQSLIDMQNLFDVLKRAPRIAEASKATDMDIDGGEIVFDN VTFQYPEADESLVFTRKVPEVARSNGDESSSYSHRRLALDRVSFRVPPGQ SLALVGSSGSGKSTVTRLLTRFYDVSNGRILIDGQNISTATMDSLRHVIS IVPQDTALFNDTIAYNIKYGRPSATDEEVVAAAKAASIHDVIMRTPQGYQ TLVGERGVRLSGGERQRLSVARAFLKGSQIIIEDESTSALDTMTETEVSN ALQKLGVNRTRIIVAHRLSTIMNVDRIVVLREGRKVEEGSFADLVQKERG VFRDMWERQQKKEKEDDLLDEHEDVYKRNGSYYNGERGRREHGGDLLHGE VPPRG* back to topspliced messenger RNA >Ggra2496.t1 ID=Ggra2496.t1|Name=Ggra2496.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2268bp|location=Sequence derived from alignment at tig00000005_pilon:496906..499491+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.
ATGTCCCGGCTCGTGGCCTGTTTCCCTATCCGCTGCCAGGTGCATGCTCC TTCGAATCTATCCCTGAGGAGCGCTCTGTTTGTTGCGCCTTCTCCAGTTT TGACCAGGGGTCTGCTGAGCTGCTCTCCACGGGACCACTTAAATTTCCGA ACCAATTCCAGGCAATTCACCTTAAAGCGCTCTTTACGCTCTTTCCGACG ATCGTTGCAGACGGTATGCACAGCAAGCGTCAATCAGAAAAAAGCGCCGG CAACACCTTATGCCGTCCCCAAATTCTCGACCGGTCTTGCTCAGTCCTCT CTCCGTGCCCTGGCTGATTACTACTCTACCTTGTGTAGAACACAACCGTT CATAGCTCGTCGACTTGTGCTATCTATCATATCCATCATAGTTTCGAAGC TCATTGGGGTCACGGTGCCCTTCTTCTACAAACGAATAATTGACAATCTT ATGGCTCATTCCGCAAAAGCCTCTGCGGAGACCTTCGGCCTGGCAGTATC TGCAATCCTTTTTCATGGGCTTACTCGTCTTTTGTCCTCAATCTCCCACG AGATGCGGAGTTGCGTTTTTGCAAAAGCGGGCCAGCGTGTGGGTCGAAGT ATCACCGCTGCATCTTTCGCACATCTTCAGTCTTTGGAAATGGCCTTCCA CAACAGCGCTCAGACGGGCGCTATCACGCGTGTGGTTGACAGGGGTACGA GAAGCGTGCTTACCATTTTTCGCGGTCTGATATTTGCTTTTATGCCAAGC TTGTTCGAGTTATTATTAGTCTGTGGCGTTCTCTTTCATCGTTTTTCCAT CTGGTATGTCGCTGTCGTTCTGATAATGTTTGCGGCGTTTATCTCATGGA CTCTGTATATCAATGACAAACTTGGCAGAGTGCGAAGAGACATGAACATG GTGGAGAATGATGCTTCTGCAAAACTCACGGACTCACTCATCAACGTGGA AGCTGTTAAAGCGTTTAACAATGCCGACTTCGAATTGAGTAGGTATGATA AGGTATTGATGCAGTACGAGAAGTTAGCTATCAGTAACGAGTGGCAATAT GCAGCCCTTAACATTGGACAGGGTGCCATTTATACAACCGGCCTCACCCT TATTCTACTTCGTGCAGCACAAGGCGTCGTAGCTGGAACCGTCACAGTTG GTTCCGTTGTAATGTTGGCAACCATGGTGCAGCAACTATGGGTTCCACTG AACTTTCTTGGATGGCAATATCGGGAAGTGAAACAAAGCCTAATTGATAT GCAAAATCTATTCGATGTGTTAAAGCGAGCACCGCGTATCGCTGAAGCCT CCAAAGCGACCGATATGGACATTGATGGAGGCGAAATTGTATTCGACAAT GTCACTTTCCAGTACCCAGAAGCAGATGAATCCCTGGTGTTTACCAGGAA AGTTCCGGAAGTAGCTCGAAGTAATGGTGATGAGTCGTCGTCGTACAGTC ACCGAAGACTTGCACTAGATCGTGTTAGCTTTCGAGTTCCTCCTGGACAA AGCCTGGCTCTGGTCGGTTCGAGCGGGTCCGGAAAGAGTACTGTCACCAG ACTTCTAACACGGTTTTACGATGTTAGCAACGGTCGGATCTTGATCGATG GGCAGAATATATCTACAGCGACAATGGACTCTCTGCGACACGTAATCAGC ATTGTCCCGCAGGATACCGCGCTCTTCAACGATACAATAGCCTATAATAT TAAGTATGGAAGACCGTCAGCGACTGACGAAGAAGTCGTTGCTGCCGCGA AAGCAGCTTCGATTCATGATGTAATCATGAGAACACCCCAAGGATATCAG ACCCTTGTCGGTGAGCGCGGTGTACGCTTATCTGGAGGTGAAAGGCAAAG ACTTTCCGTAGCCAGAGCTTTCTTGAAAGGCAGCCAGATCATTATTGAAG ACGAAAGTACTAGCGCTCTTGACACCATGACGGAAACAGAGGTATCGAAT GCACTCCAGAAACTCGGGGTTAACAGAACACGGATCATTGTCGCTCATCG TTTAAGTACCATTATGAACGTGGACCGCATTGTTGTGTTGAGGGAAGGAC GGAAAGTAGAAGAAGGTAGCTTTGCTGACCTGGTCCAAAAAGAGCGTGGC GTTTTCAGAGACATGTGGGAGAGGCAGCAGAAGAAAGAGAAAGAAGATGA CCTCCTTGACGAGCATGAAGATGTTTATAAGAGAAACGGGTCTTACTATA ATGGAGAAAGAGGGCGACGTGAACATGGAGGAGACCTTCTTCATGGCGAA GTCCCACCAAGAGGATGA back to topprotein sequence of Ggra2496.t1 >Ggra2496.t1 ID=Ggra2496.t1|Name=Ggra2496.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=756bp
MSRLVACFPIRCQVHAPSNLSLRSALFVAPSPVLTRGLLSCSPRDHLNFR TNSRQFTLKRSLRSFRRSLQTVCTASVNQKKAPATPYAVPKFSTGLAQSS LRALADYYSTLCRTQPFIARRLVLSIISIIVSKLIGVTVPFFYKRIIDNL MAHSAKASAETFGLAVSAILFHGLTRLLSSISHEMRSCVFAKAGQRVGRS ITAASFAHLQSLEMAFHNSAQTGAITRVVDRGTRSVLTIFRGLIFAFMPS LFELLLVCGVLFHRFSIWYVAVVLIMFAAFISWTLYINDKLGRVRRDMNM VENDASAKLTDSLINVEAVKAFNNADFELSRYDKVLMQYEKLAISNEWQY AALNIGQGAIYTTGLTLILLRAAQGVVAGTVTVGSVVMLATMVQQLWVPL NFLGWQYREVKQSLIDMQNLFDVLKRAPRIAEASKATDMDIDGGEIVFDN VTFQYPEADESLVFTRKVPEVARSNGDESSSYSHRRLALDRVSFRVPPGQ SLALVGSSGSGKSTVTRLLTRFYDVSNGRILIDGQNISTATMDSLRHVIS IVPQDTALFNDTIAYNIKYGRPSATDEEVVAAAKAASIHDVIMRTPQGYQ TLVGERGVRLSGGERQRLSVARAFLKGSQIIIEDESTSALDTMTETEVSN ALQKLGVNRTRIIVAHRLSTIMNVDRIVVLREGRKVEEGSFADLVQKERG VFRDMWERQQKKEKEDDLLDEHEDVYKRNGSYYNGERGRREHGGDLLHGE VPPRG* back to topmRNA from alignment at tig00000005_pilon:496906..499491+ Legend: polypeptidestart_codonCDSexonintronstop_codon Hold the cursor over a type above to highlight its positions in the sequence below. >Ggra2496.t1 ID=Ggra2496.t1|Name=Ggra2496.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2586bp|location=Sequence derived from alignment at tig00000005_pilon:496906..499491+ (Gracilaria gracilis GNS1m male) ATGTCCCGGCTCGTGGCCTGTTTCCCTATCCGCTGCCAGGTGCATGCTCC
TTCGAATCTATCCCTGAGGAGCGCTCTGTTTGTTGCGCCTTCTCCAGTTT
TGACCAGGGGTCTGCTGAGCTGCTCTCCACGGGACCACTTAAATTTCCGA
ACCAATTCCAGGCAATTCACCTTAAAGCGCTCTTTACGCTCTTTCCGACG
ATCGTTGCAGACGGTATGCACAGCAAGCGTCAATCAGAAAAAAGCGCCGG
CAACACCTTATGCCGTCCCCAAATTCTCGACCGGTCTTGCTCAGTCCTCT
CTCCGTGCCCTGGCTGATTACTACTCTACCTTGTGTAGAACACAACCGTT
CATAGCTCGTCGACTTGTGCTATCTATCATATCCATCATAGTTTCGAAGC
TCATTGGGGTCACGGTGCCCTTCTTCTACAAACGAATAATTGACAATCTT
ATGGCTCATTCCGCAAAAGCCTCTGCGGAGACCTTCGGCCTGGCAGTATC
TGCAATCCTTTTTCATGGGCTTACTCGTCTTTTGTCCTCAATCTCCCACG
AGATGCGGAGTTGCGTTTTTGCAAAAGCGGGCCAGCGTGTGGGTCGAAGT
ATCACCGCTGCATCTTTCGCACATCTTCAGTCTTTGGAAATGGCCTTCCA
CAACAGCGCTCAGACGGGCGCTATCACGCGTGTGGTTGACAGGGGTACGA
GAAGCGTGCTTACCATTTTTCGCGGTCTGATATTTGCTTTTATGCCAAGC
TTGTTCGAGTTATTATTAGTCTGTGGCGTTCTCTTTCATCGTTTTTCCAT
CTGGTATGTCGCTGTCGTTCTGATAATGTTTGCGGCGTTTATCTCATGGA
CTCTGTATATCAATGACAAACTTGGCAGAGTGCGAAGAGACATGAACATG
GTGGAGAATGATGCTTCTGCAAAACTCACGGACTCACTCATCAACGTGGA
AGCTGTTAAAGCGTTTAACAATGCCGACTTCGAATTGAGTAGGTATGATA
AGGTATTGATGCAGTACGAGAAGTTAGCTATCAGTAACGAGTGGCAATAT
GCAGCCCTTAACATTGGACAGGGTGCCATTTATACAACCGGCCTCACCCT
TATTCTACTTCGTGCAGCACAAGGCGTCGTAGCTGGAACCGTCACAGTTG
GTTCCGTTGTAATGTTGGCAACCATGGTGCAGCAACTATGGGTTCCACTG
AACTTTCTTGGATGGCAATATCGGGAAGTGAAACAAAGCCTAATTGATAT
GCAAAATCTATTCGATGTGTTAAAGCGAGCACCGCGTATCGCTGAAGCCT
CCAAAGCGACCGATATGGACATTGATGGAGGCGAAATTGTATTCGACAAT
GTCACTTTCCAGTACCCAGAAGCAGATGAATCCCTGGTGTTTACCAGGAA
AGTTCCGGAAGTAGCTCGAAGTAATGGTGATGAGTCGTCGTCGTACAGTC
ACCGAAGACTTGCACTAGATCGTGTTAGCTTTCGAGTTCCTCCTGGACAA
AGCCTGGCTCTGGTCGGTTCGAGCGGGTCCGGAAAGAGTACTGTCACCAG
ACTTCTAACACGGTTTTACGATGTTAGCAACGGTCGGATCTTGATCGATG
GGCAGAATATATCTACAGCGACAATGGACTCTCTGCGACACGTAATCAGC
ATTGTCCCGCAGGTAAGTAACAGTTGAACCTCTGACTTTTTGAATCCCGG
TCTTCTCCCTTTAGAATGGTTGGATTTTTGTCACTGACATCTCGAACATT
TATCCAAACTTGACTCCCACAGGATACCGCGCTCTTCAACGGTACGCACC
TCCCTTCGTTTTGTGCTCAAGTCCAAGGTCCACTAGAAGACGAGATCCCG
ATACTAATTCTTGAACATTCATTTGCTCCGAACAGATACAATAGCCTATA
ATATTAAGTATGGAAGACCGTCAGCGACTGACGAAGAAGTCGTTGCTGCC
GCGAAAGCAGCTTCGATTCATGATGTAATCATGAGAACACCCCAAGGATA
TCAGACCCTTGTCGGTGAGCGCGGTGTACGCTTATCTGGAGGTGAAAGGC
AAAGACTTTCCGTAGCCAGAGCTTTCTTGAAAGGCAGCCAGATCATTATT
GAAGACGAAAGTACTAGCGCTCTTGGTAAGTTACTTGGGAGCTAACTTCC
TGTTTACTTCTCATTGTCGCAGCGCTGTTGTACGGAGCTGATTTCTAACC
ACTAAATGCGGCGCGGCATTTGTATAATGCACCTTTTAGACACCATGACG
GAAACAGAGGTATCGAATGCACTCCAGAAACTCGGGGTTAACAGAACACG
GATCATTGTCGCTCATCGTTTAAGTACCATTATGAACGTGGACCGCATTG
TTGTGTTGAGGGAAGGACGGAAAGTAGAAGAAGGTAGCTTTGCTGACCTG
GTCCAAAAAGAGCGTGGCGTTTTCAGAGACATGTGGGAGAGGCAGCAGAA
GAAAGAGAAAGAAGATGACCTCCTTGACGAGCATGAAGATGTTTATAAGA
GAAACGGGTCTTACTATAATGGAGAAAGAGGGCGACGTGAACATGGAGGA
GACCTTCTTCATGGCGAAGTCCCACCAAGAGGATGA back to topCoding sequence (CDS) from alignment at tig00000005_pilon:496906..499491+ >Ggra2496.t1 ID=Ggra2496.t1|Name=Ggra2496.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=2268bp|location=Sequence derived from alignment at tig00000005_pilon:496906..499491+ (Gracilaria gracilis GNS1m male) ATGTCCCGGCTCGTGGCCTGTTTCCCTATCCGCTGCCAGGTGCATGCTCC TTCGAATCTATCCCTGAGGAGCGCTCTGTTTGTTGCGCCTTCTCCAGTTT TGACCAGGGGTCTGCTGAGCTGCTCTCCACGGGACCACTTAAATTTCCGA ACCAATTCCAGGCAATTCACCTTAAAGCGCTCTTTACGCTCTTTCCGACG ATCGTTGCAGACGGTATGCACAGCAAGCGTCAATCAGAAAAAAGCGCCGG CAACACCTTATGCCGTCCCCAAATTCTCGACCGGTCTTGCTCAGTCCTCT CTCCGTGCCCTGGCTGATTACTACTCTACCTTGTGTAGAACACAACCGTT CATAGCTCGTCGACTTGTGCTATCTATCATATCCATCATAGTTTCGAAGC TCATTGGGGTCACGGTGCCCTTCTTCTACAAACGAATAATTGACAATCTT ATGGCTCATTCCGCAAAAGCCTCTGCGGAGACCTTCGGCCTGGCAGTATC TGCAATCCTTTTTCATGGGCTTACTCGTCTTTTGTCCTCAATCTCCCACG AGATGCGGAGTTGCGTTTTTGCAAAAGCGGGCCAGCGTGTGGGTCGAAGT ATCACCGCTGCATCTTTCGCACATCTTCAGTCTTTGGAAATGGCCTTCCA CAACAGCGCTCAGACGGGCGCTATCACGCGTGTGGTTGACAGGGGTACGA GAAGCGTGCTTACCATTTTTCGCGGTCTGATATTTGCTTTTATGCCAAGC TTGTTCGAGTTATTATTAGTCTGTGGCGTTCTCTTTCATCGTTTTTCCAT CTGGTATGTCGCTGTCGTTCTGATAATGTTTGCGGCGTTTATCTCATGGA CTCTGTATATCAATGACAAACTTGGCAGAGTGCGAAGAGACATGAACATG GTGGAGAATGATGCTTCTGCAAAACTCACGGACTCACTCATCAACGTGGA AGCTGTTAAAGCGTTTAACAATGCCGACTTCGAATTGAGTAGGTATGATA AGGTATTGATGCAGTACGAGAAGTTAGCTATCAGTAACGAGTGGCAATAT GCAGCCCTTAACATTGGACAGGGTGCCATTTATACAACCGGCCTCACCCT TATTCTACTTCGTGCAGCACAAGGCGTCGTAGCTGGAACCGTCACAGTTG GTTCCGTTGTAATGTTGGCAACCATGGTGCAGCAACTATGGGTTCCACTG AACTTTCTTGGATGGCAATATCGGGAAGTGAAACAAAGCCTAATTGATAT GCAAAATCTATTCGATGTGTTAAAGCGAGCACCGCGTATCGCTGAAGCCT CCAAAGCGACCGATATGGACATTGATGGAGGCGAAATTGTATTCGACAAT GTCACTTTCCAGTACCCAGAAGCAGATGAATCCCTGGTGTTTACCAGGAA AGTTCCGGAAGTAGCTCGAAGTAATGGTGATGAGTCGTCGTCGTACAGTC ACCGAAGACTTGCACTAGATCGTGTTAGCTTTCGAGTTCCTCCTGGACAA AGCCTGGCTCTGGTCGGTTCGAGCGGGTCCGGAAAGAGTACTGTCACCAG ACTTCTAACACGGTTTTACGATGTTAGCAACGGTCGGATCTTGATCGATG GGCAGAATATATCTACAGCGACAATGGACTCTCTGCGACACGTAATCAGC ATTGTCCCGCAGGATACCGCGCTCTTCAACGATACAATAGCCTATAATAT TAAGTATGGAAGACCGTCAGCGACTGACGAAGAAGTCGTTGCTGCCGCGA AAGCAGCTTCGATTCATGATGTAATCATGAGAACACCCCAAGGATATCAG ACCCTTGTCGGTGAGCGCGGTGTACGCTTATCTGGAGGTGAAAGGCAAAG ACTTTCCGTAGCCAGAGCTTTCTTGAAAGGCAGCCAGATCATTATTGAAG ACGAAAGTACTAGCGCTCTTGACACCATGACGGAAACAGAGGTATCGAAT GCACTCCAGAAACTCGGGGTTAACAGAACACGGATCATTGTCGCTCATCG TTTAAGTACCATTATGAACGTGGACCGCATTGTTGTGTTGAGGGAAGGAC GGAAAGTAGAAGAAGGTAGCTTTGCTGACCTGGTCCAAAAAGAGCGTGGC GTTTTCAGAGACATGTGGGAGAGGCAGCAGAAGAAAGAGAAAGAAGATGA CCTCCTTGACGAGCATGAAGATGTTTATAAGAGAAACGGGTCTTACTATA ATGGAGAAAGAGGGCGACGTGAACATGGAGGAGACCTTCTTCATGGCGAA GTCCCACCAAGAGGATGA back to top
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