Ggra2491.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra2491.t1
Unique NameGgra2491.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length500
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000005_piloncontigtig00000005_pilon:483625..485286 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog373994.Riv7116_5989
Preferred nameamgP
PFAMsAPH
Max annot lvl2|Bacteria
Evalue4.15e-17
EggNOG OGsCOG3173@1|root,COG3173@2|Bacteria
Descriptionvery-long-chain-acyl-CoA dehydrogenase activity
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra2491Ggra2491Gracilaria gracilis GNS1m malegenetig00000005_pilon 483625..485286 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2491.t1Ggra2491.t1Gracilaria gracilis GNS1m malepolypeptidetig00000005_pilon 483625..485286 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2491.t1.stop1Ggra2491.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000005_pilon 483625..483627 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2491.t1.CDS1Ggra2491.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000005_pilon 483625..485111 -
Ggra2491.t1.CDS2Ggra2491.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000005_pilon 485274..485286 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2491.t1.exon1Ggra2491.t1.exon1Gracilaria gracilis GNS1m maleexontig00000005_pilon 483625..485111 -
Ggra2491.t1.exon2Ggra2491.t1.exon2Gracilaria gracilis GNS1m maleexontig00000005_pilon 485274..485286 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2491.t1.intron1Ggra2491.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000005_pilon 485112..485273 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2491.t1.start1Ggra2491.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000005_pilon 485284..485286 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra2491.t1 ID=Ggra2491.t1|Name=Ggra2491.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=500bp
MSQKDLQIEARGRSDPVREHSASIPRSDWSWSMCTSGEVLKHEIQALIVD
YSHKKVLLQREGERWILPGTLIPFDSYESSVEPMYVIGLVKNVLEHAVTL
SFLRQCWKAQKAVLRAREEMHIEKTVVMMEFNSDLVEFHAPYSCVSVHDA
LVFHLFEDAAMAIRSELAGVLSNSQPNGRVLWQRPQWYAEATAWMESVMV
QKCEANLDEPIIHRRSSIYGALLEATTNKGRFFLKCTPPWADDASYTKIL
SDIAPRFVAKPVEVDLERHTLVTSDYGEILDVWDLTTTEKDKLSVDYAKL
QQTTIGRDEELIAAGFLDCRPESMKEHIDYVCSNRELFIVTDLADCDTDV
KEELDFFCANVDRFKRELQTLMDSGLPSTVTHNDLYVTNIYKSAKSDNFM
FFDWCEGYVSHPFVGEFGGIEEDPFLEQWTEWDTLENLKKYFSIGTTFRS
LAMFIQRWKEAKALEQSESKESWKEVYSALWAFNSCFRANHEADIPSWS*
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spliced messenger RNA

>Ggra2491.t1 ID=Ggra2491.t1|Name=Ggra2491.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1500bp|location=Sequence derived from alignment at tig00000005_pilon:483625..485286- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCTCAGAAGGATTTACAAATCGAGGCCCGTGGTCGATCCGATCCAGT
CCGTGAACATTCTGCGTCAATACCAAGAAGCGATTGGTCATGGTCTATGT
GCACATCTGGCGAAGTTCTTAAACATGAAATTCAAGCTCTCATTGTTGAT
TACTCCCACAAGAAAGTTCTGCTACAACGGGAAGGCGAACGATGGATCCT
CCCTGGGACTCTAATCCCTTTTGACTCATATGAATCCAGCGTTGAGCCCA
TGTACGTGATCGGACTTGTCAAAAACGTTTTAGAACATGCTGTGACGCTT
TCTTTTTTGCGTCAATGCTGGAAAGCGCAGAAAGCGGTTTTGCGAGCACG
GGAAGAGATGCATATAGAGAAGACAGTGGTGATGATGGAATTCAACTCTG
ACTTAGTTGAGTTTCATGCCCCATACAGCTGCGTATCAGTGCATGATGCT
CTCGTTTTCCATCTTTTCGAAGATGCAGCCATGGCAATTCGTTCCGAGCT
AGCGGGAGTTCTAAGCAATTCGCAGCCAAACGGTCGAGTGTTGTGGCAAC
GTCCTCAGTGGTATGCTGAGGCAACAGCTTGGATGGAAAGCGTTATGGTC
CAGAAGTGTGAAGCCAACCTTGATGAGCCGATTATCCACAGGAGATCATC
AATCTACGGCGCTCTGCTAGAAGCAACTACAAACAAAGGGCGCTTTTTCT
TGAAGTGTACGCCGCCTTGGGCGGATGACGCTTCCTATACCAAGATCCTA
TCTGATATTGCACCTAGATTCGTGGCAAAGCCAGTGGAGGTAGACTTGGA
GCGCCATACATTGGTCACCAGTGATTATGGAGAGATACTAGACGTTTGGG
ATCTTACGACAACGGAAAAGGACAAACTGTCAGTGGACTACGCCAAGCTT
CAGCAGACTACGATCGGGAGAGACGAAGAGCTTATTGCAGCTGGCTTCCT
AGACTGTCGCCCGGAAAGCATGAAGGAACACATAGATTATGTGTGTAGTA
ATAGAGAGCTCTTCATTGTCACCGATCTTGCAGATTGTGACACGGACGTG
AAGGAAGAGCTTGATTTCTTCTGTGCTAATGTTGATCGGTTCAAGAGAGA
GTTGCAGACCCTCATGGATTCGGGTCTGCCTTCAACTGTGACGCACAATG
ATCTGTACGTGACAAATATATACAAATCTGCTAAATCTGATAATTTCATG
TTCTTCGACTGGTGTGAAGGGTATGTTTCTCATCCGTTTGTGGGTGAGTT
TGGTGGGATTGAAGAAGATCCTTTCCTGGAACAGTGGACAGAGTGGGATA
CCTTGGAAAATCTAAAGAAATACTTCTCCATCGGAACAACATTCCGGTCT
TTAGCTATGTTCATTCAAAGATGGAAGGAGGCAAAAGCTCTGGAACAGTC
GGAATCAAAAGAAAGTTGGAAAGAAGTCTATTCGGCTTTATGGGCCTTCA
ATTCTTGCTTTAGGGCAAACCATGAAGCTGATATTCCTTCGTGGTCTTAA
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protein sequence of Ggra2491.t1

>Ggra2491.t1 ID=Ggra2491.t1|Name=Ggra2491.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=500bp
MSQKDLQIEARGRSDPVREHSASIPRSDWSWSMCTSGEVLKHEIQALIVD
YSHKKVLLQREGERWILPGTLIPFDSYESSVEPMYVIGLVKNVLEHAVTL
SFLRQCWKAQKAVLRAREEMHIEKTVVMMEFNSDLVEFHAPYSCVSVHDA
LVFHLFEDAAMAIRSELAGVLSNSQPNGRVLWQRPQWYAEATAWMESVMV
QKCEANLDEPIIHRRSSIYGALLEATTNKGRFFLKCTPPWADDASYTKIL
SDIAPRFVAKPVEVDLERHTLVTSDYGEILDVWDLTTTEKDKLSVDYAKL
QQTTIGRDEELIAAGFLDCRPESMKEHIDYVCSNRELFIVTDLADCDTDV
KEELDFFCANVDRFKRELQTLMDSGLPSTVTHNDLYVTNIYKSAKSDNFM
FFDWCEGYVSHPFVGEFGGIEEDPFLEQWTEWDTLENLKKYFSIGTTFRS
LAMFIQRWKEAKALEQSESKESWKEVYSALWAFNSCFRANHEADIPSWS*
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mRNA from alignment at tig00000005_pilon:483625..485286-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra2491.t1 ID=Ggra2491.t1|Name=Ggra2491.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1662bp|location=Sequence derived from alignment at tig00000005_pilon:483625..485286- (Gracilaria gracilis GNS1m male)
ATGTCTCAGAAGGGTAGGTGATGTCATCCCTCCAAATAGTAACGTTTTTT
TCTTTTTGCGGTAGAAGTATAAGGCTTTAGGCCCAGACCGCTATATGCCT
TCGCGACGATTCTCACCTTCAGAATTCGTTCCTTATCTTTGAACTTGGAC
AAAATGTCGCTGAAATCAACTTCAGATTTACAAATCGAGGCCCGTGGTCG
ATCCGATCCAGTCCGTGAACATTCTGCGTCAATACCAAGAAGCGATTGGT
CATGGTCTATGTGCACATCTGGCGAAGTTCTTAAACATGAAATTCAAGCT
CTCATTGTTGATTACTCCCACAAGAAAGTTCTGCTACAACGGGAAGGCGA
ACGATGGATCCTCCCTGGGACTCTAATCCCTTTTGACTCATATGAATCCA
GCGTTGAGCCCATGTACGTGATCGGACTTGTCAAAAACGTTTTAGAACAT
GCTGTGACGCTTTCTTTTTTGCGTCAATGCTGGAAAGCGCAGAAAGCGGT
TTTGCGAGCACGGGAAGAGATGCATATAGAGAAGACAGTGGTGATGATGG
AATTCAACTCTGACTTAGTTGAGTTTCATGCCCCATACAGCTGCGTATCA
GTGCATGATGCTCTCGTTTTCCATCTTTTCGAAGATGCAGCCATGGCAAT
TCGTTCCGAGCTAGCGGGAGTTCTAAGCAATTCGCAGCCAAACGGTCGAG
TGTTGTGGCAACGTCCTCAGTGGTATGCTGAGGCAACAGCTTGGATGGAA
AGCGTTATGGTCCAGAAGTGTGAAGCCAACCTTGATGAGCCGATTATCCA
CAGGAGATCATCAATCTACGGCGCTCTGCTAGAAGCAACTACAAACAAAG
GGCGCTTTTTCTTGAAGTGTACGCCGCCTTGGGCGGATGACGCTTCCTAT
ACCAAGATCCTATCTGATATTGCACCTAGATTCGTGGCAAAGCCAGTGGA
GGTAGACTTGGAGCGCCATACATTGGTCACCAGTGATTATGGAGAGATAC
TAGACGTTTGGGATCTTACGACAACGGAAAAGGACAAACTGTCAGTGGAC
TACGCCAAGCTTCAGCAGACTACGATCGGGAGAGACGAAGAGCTTATTGC
AGCTGGCTTCCTAGACTGTCGCCCGGAAAGCATGAAGGAACACATAGATT
ATGTGTGTAGTAATAGAGAGCTCTTCATTGTCACCGATCTTGCAGATTGT
GACACGGACGTGAAGGAAGAGCTTGATTTCTTCTGTGCTAATGTTGATCG
GTTCAAGAGAGAGTTGCAGACCCTCATGGATTCGGGTCTGCCTTCAACTG
TGACGCACAATGATCTGTACGTGACAAATATATACAAATCTGCTAAATCT
GATAATTTCATGTTCTTCGACTGGTGTGAAGGGTATGTTTCTCATCCGTT
TGTGGGTGAGTTTGGTGGGATTGAAGAAGATCCTTTCCTGGAACAGTGGA
CAGAGTGGGATACCTTGGAAAATCTAAAGAAATACTTCTCCATCGGAACA
ACATTCCGGTCTTTAGCTATGTTCATTCAAAGATGGAAGGAGGCAAAAGC
TCTGGAACAGTCGGAATCAAAAGAAAGTTGGAAAGAAGTCTATTCGGCTT
TATGGGCCTTCAATTCTTGCTTTAGGGCAAACCATGAAGCTGATATTCCT
TCGTGGTCTTAA
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Coding sequence (CDS) from alignment at tig00000005_pilon:483625..485286-

>Ggra2491.t1 ID=Ggra2491.t1|Name=Ggra2491.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1500bp|location=Sequence derived from alignment at tig00000005_pilon:483625..485286- (Gracilaria gracilis GNS1m male)
ATGTCTCAGAAGGATTTACAAATCGAGGCCCGTGGTCGATCCGATCCAGT
CCGTGAACATTCTGCGTCAATACCAAGAAGCGATTGGTCATGGTCTATGT
GCACATCTGGCGAAGTTCTTAAACATGAAATTCAAGCTCTCATTGTTGAT
TACTCCCACAAGAAAGTTCTGCTACAACGGGAAGGCGAACGATGGATCCT
CCCTGGGACTCTAATCCCTTTTGACTCATATGAATCCAGCGTTGAGCCCA
TGTACGTGATCGGACTTGTCAAAAACGTTTTAGAACATGCTGTGACGCTT
TCTTTTTTGCGTCAATGCTGGAAAGCGCAGAAAGCGGTTTTGCGAGCACG
GGAAGAGATGCATATAGAGAAGACAGTGGTGATGATGGAATTCAACTCTG
ACTTAGTTGAGTTTCATGCCCCATACAGCTGCGTATCAGTGCATGATGCT
CTCGTTTTCCATCTTTTCGAAGATGCAGCCATGGCAATTCGTTCCGAGCT
AGCGGGAGTTCTAAGCAATTCGCAGCCAAACGGTCGAGTGTTGTGGCAAC
GTCCTCAGTGGTATGCTGAGGCAACAGCTTGGATGGAAAGCGTTATGGTC
CAGAAGTGTGAAGCCAACCTTGATGAGCCGATTATCCACAGGAGATCATC
AATCTACGGCGCTCTGCTAGAAGCAACTACAAACAAAGGGCGCTTTTTCT
TGAAGTGTACGCCGCCTTGGGCGGATGACGCTTCCTATACCAAGATCCTA
TCTGATATTGCACCTAGATTCGTGGCAAAGCCAGTGGAGGTAGACTTGGA
GCGCCATACATTGGTCACCAGTGATTATGGAGAGATACTAGACGTTTGGG
ATCTTACGACAACGGAAAAGGACAAACTGTCAGTGGACTACGCCAAGCTT
CAGCAGACTACGATCGGGAGAGACGAAGAGCTTATTGCAGCTGGCTTCCT
AGACTGTCGCCCGGAAAGCATGAAGGAACACATAGATTATGTGTGTAGTA
ATAGAGAGCTCTTCATTGTCACCGATCTTGCAGATTGTGACACGGACGTG
AAGGAAGAGCTTGATTTCTTCTGTGCTAATGTTGATCGGTTCAAGAGAGA
GTTGCAGACCCTCATGGATTCGGGTCTGCCTTCAACTGTGACGCACAATG
ATCTGTACGTGACAAATATATACAAATCTGCTAAATCTGATAATTTCATG
TTCTTCGACTGGTGTGAAGGGTATGTTTCTCATCCGTTTGTGGGTGAGTT
TGGTGGGATTGAAGAAGATCCTTTCCTGGAACAGTGGACAGAGTGGGATA
CCTTGGAAAATCTAAAGAAATACTTCTCCATCGGAACAACATTCCGGTCT
TTAGCTATGTTCATTCAAAGATGGAAGGAGGCAAAAGCTCTGGAACAGTC
GGAATCAAAAGAAAGTTGGAAAGAAGTCTATTCGGCTTTATGGGCCTTCA
ATTCTTGCTTTAGGGCAAACCATGAAGCTGATATTCCTTCGTGGTCTTAA
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