Ggra2489.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra2489.t1
Unique NameGgra2489.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length190
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000005_piloncontigtig00000005_pilon:476320..476971 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog6669.EFX84496
Preferred nameTBCC
PFAMsTBCC,TBCC_N
Max annot lvl33208|Metazoa
KEGG koko:K21766
GOsGO:0003674,GO:0003824,GO:0003924,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005856,GO:0005874,GO:0005929,GO:0006457,GO:0007021,GO:0007023,GO:0008150,GO:0009987,GO:0015630,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0017111,GO:0022607,GO:0032391,GO:0034622,GO:0035869,GO:0042995,GO:0043005,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043933,GO:0044085,GO:0044422,GO:0044424,GO:0044430,GO:0044441,GO:0044444,GO:0044446,GO:0044463,GO:0044464,GO:0051087,GO:0065003,GO:0071840,GO:0097458,GO:0097730,GO:0097731,GO:0097733,GO:0099080,GO:0099081,GO:0099512,GO:0099513,GO:0120025,GO:0120038
Evalue1.47e-05
EggNOG OGsKOG2512@1|root,KOG2512@2759|Eukaryota,39SCD@33154|Opisthokonta,3BFCJ@33208|Metazoa,3CY8P@33213|Bilateria,41YR3@6656|Arthropoda
DescriptionIt is involved in the biological process described with post-chaperonin tubulin folding pathway
COG categoryO
BRITEko00000,ko04812
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra2489Ggra2489Gracilaria gracilis GNS1m malegenetig00000005_pilon 476320..476971 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2489.t1Ggra2489.t1Gracilaria gracilis GNS1m malepolypeptidetig00000005_pilon 476320..476971 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2489.t1.start1Ggra2489.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000005_pilon 476320..476322 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2489.t1.CDS1Ggra2489.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000005_pilon 476320..476878 +
Ggra2489.t1.CDS2Ggra2489.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000005_pilon 476961..476971 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2489.t1.exon1Ggra2489.t1.exon1Gracilaria gracilis GNS1m maleexontig00000005_pilon 476320..476878 +
Ggra2489.t1.exon2Ggra2489.t1.exon2Gracilaria gracilis GNS1m maleexontig00000005_pilon 476961..476971 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2489.t1.intron1Ggra2489.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000005_pilon 476879..476960 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2489.t1.stop1Ggra2489.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000005_pilon 476969..476971 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra2489.t1 ID=Ggra2489.t1|Name=Ggra2489.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=190bp
MSLKSKSDQLEAQFAAESEILRSKIETAALASLPDVRAQLEAVRELLAQG
TEWWTKYDVRRNSEKLLSLEKDVDIVARRLKPRRRFRFSQAPSLETPEAL
PQSASSPKKVALPAGPLENGVIVDSRSVRNGKVEIDNFDGKPLTVMGLKD
ACVFLKGTPTALRLTNLTRCEVQGVLVNGSVFVSECAVR*
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spliced messenger RNA

>Ggra2489.t1 ID=Ggra2489.t1|Name=Ggra2489.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=570bp|location=Sequence derived from alignment at tig00000005_pilon:476320..476971+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCACTGAAATCCAAATCCGATCAGCTTGAGGCACAGTTTGCTGCCGA
GTCCGAAATACTACGCTCTAAGATCGAAACCGCCGCGCTGGCGTCGCTCC
CAGATGTAAGAGCACAGTTAGAGGCCGTGAGGGAGCTGCTGGCGCAAGGC
ACCGAATGGTGGACGAAGTATGACGTACGAAGAAATTCAGAAAAGCTGCT
TTCCCTTGAGAAAGATGTCGATATCGTAGCCAGACGACTTAAGCCTCGTC
GGAGATTTCGGTTCAGTCAAGCTCCATCGTTGGAAACTCCTGAAGCTTTG
CCCCAAAGCGCATCATCCCCAAAGAAAGTAGCTCTTCCTGCGGGTCCGCT
GGAAAATGGAGTGATCGTGGATTCTAGAAGCGTGCGAAACGGGAAAGTAG
AAATAGACAACTTCGACGGAAAACCCTTGACAGTAATGGGCTTGAAAGAC
GCTTGCGTTTTTCTGAAAGGAACGCCTACTGCGTTGCGACTCACAAATCT
CACCCGCTGTGAGGTGCAAGGCGTCCTGGTTAACGGTTCAGTTTTTGTAT
CGGAGTGCGCGGTCCGATAA
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protein sequence of Ggra2489.t1

>Ggra2489.t1 ID=Ggra2489.t1|Name=Ggra2489.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=190bp
MSLKSKSDQLEAQFAAESEILRSKIETAALASLPDVRAQLEAVRELLAQG
TEWWTKYDVRRNSEKLLSLEKDVDIVARRLKPRRRFRFSQAPSLETPEAL
PQSASSPKKVALPAGPLENGVIVDSRSVRNGKVEIDNFDGKPLTVMGLKD
ACVFLKGTPTALRLTNLTRCEVQGVLVNGSVFVSECAVR*
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mRNA from alignment at tig00000005_pilon:476320..476971+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra2489.t1 ID=Ggra2489.t1|Name=Ggra2489.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=652bp|location=Sequence derived from alignment at tig00000005_pilon:476320..476971+ (Gracilaria gracilis GNS1m male)
ATGTCACTGAAATCCAAATCCGATCAGCTTGAGGCACAGTTTGCTGCCGA
GTCCGAAATACTACGCTCTAAGATCGAAACCGCCGCGCTGGCGTCGCTCC
CAGATGTAAGAGCACAGTTAGAGGCCGTGAGGGAGCTGCTGGCGCAAGGC
ACCGAATGGTGGACGAAGTATGACGTACGAAGAAATTCAGAAAAGCTGCT
TTCCCTTGAGAAAGATGTCGATATCGTAGCCAGACGACTTAAGCCTCGTC
GGAGATTTCGGTTCAGTCAAGCTCCATCGTTGGAAACTCCTGAAGCTTTG
CCCCAAAGCGCATCATCCCCAAAGAAAGTAGCTCTTCCTGCGGGTCCGCT
GGAAAATGGAGTGATCGTGGATTCTAGAAGCGTGCGAAACGGGAAAGTAG
AAATAGACAACTTCGACGGAAAACCCTTGACAGTAATGGGCTTGAAAGAC
GCTTGCGTTTTTCTGAAAGGAACGCCTACTGCGTTGCGACTCACAAATCT
CACCCGCTGTGAGGTGCAAGGCGTCCTGGTTAACGGTTCAGTTTTTGTAT
CGGAGTGCGGTAATTGTAGCATAAGCGTAGTGTGTCATCAACTGCGCATC
CACCAGTCGAATCATTGCTCATTTTGGACATGTTCCGACAGCGGTCCGAT
AA
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Coding sequence (CDS) from alignment at tig00000005_pilon:476320..476971+

>Ggra2489.t1 ID=Ggra2489.t1|Name=Ggra2489.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=570bp|location=Sequence derived from alignment at tig00000005_pilon:476320..476971+ (Gracilaria gracilis GNS1m male)
ATGTCACTGAAATCCAAATCCGATCAGCTTGAGGCACAGTTTGCTGCCGA
GTCCGAAATACTACGCTCTAAGATCGAAACCGCCGCGCTGGCGTCGCTCC
CAGATGTAAGAGCACAGTTAGAGGCCGTGAGGGAGCTGCTGGCGCAAGGC
ACCGAATGGTGGACGAAGTATGACGTACGAAGAAATTCAGAAAAGCTGCT
TTCCCTTGAGAAAGATGTCGATATCGTAGCCAGACGACTTAAGCCTCGTC
GGAGATTTCGGTTCAGTCAAGCTCCATCGTTGGAAACTCCTGAAGCTTTG
CCCCAAAGCGCATCATCCCCAAAGAAAGTAGCTCTTCCTGCGGGTCCGCT
GGAAAATGGAGTGATCGTGGATTCTAGAAGCGTGCGAAACGGGAAAGTAG
AAATAGACAACTTCGACGGAAAACCCTTGACAGTAATGGGCTTGAAAGAC
GCTTGCGTTTTTCTGAAAGGAACGCCTACTGCGTTGCGACTCACAAATCT
CACCCGCTGTGAGGTGCAAGGCGTCCTGGTTAACGGTTCAGTTTTTGTAT
CGGAGTGCGCGGTCCGATAA
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