Ggra2488.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra2488.t1
Unique Name	Ggra2488.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	439

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000005_pilon	contig	tig00000005_pilon:474555..475871 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra2488	Ggra2488	Gracilaria gracilis GNS1m male	gene	tig00000005_pilon 474555..475871 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2488.t1.start1	Ggra2488.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000005_pilon 474555..474557 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2488.t1.CDS1	Ggra2488.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000005_pilon 474555..475871 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2488.t1.exon1	Ggra2488.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000005_pilon 474555..475871 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2488.t1.stop1	Ggra2488.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000005_pilon 475869..475871 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2488.t1	Ggra2488.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000005_pilon 474555..475871 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000005_pilon:474555..475871+
coding sequence from alignment at tig00000005_pilon:474555..475871+

mRNA sequence

>Ggra2488.t1 ID=Ggra2488.t1|Name=Ggra2488.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=439bp
MPIPRRRSRPLRKRPRFDDLADDEPESSSDSTSSESYESSPPPDFAADAD
DEEGYISAPEETESPKPQPKRPSRLAKPRSFIDAVRPYVEPMSRDAIKLS
QLTMAEITAGAAYRGPLVVTDADRAEVEAAHAAAARLARHESDDLTDDRE
EVIPQIETRAFSLKRQRFRSRNSELSNSDYEMLSRESGSDSASEPEADGS
PRSSAPADESPTSRCNEEKRYELRRESSDYESENNGSPSKNVIRLVRSDK
IGPGRCMNDSDNESCDSRPDHITSKDGEESSSSACQTLTGNFRTSDTYAV
SRLDTRARNTQRHSERTAPTASNRVIDVIDLSQDHDSSACTRLPRTETVR
ARSVMRRSTSSGGRGPSTRSCAGLSQAPDVIDLCGDSGEEGSGEEVPKPT
ETEVVDLCLDGRGAEAAQMQTLPKRRLRIRPGWRPIDR*

spliced messenger RNA

>Ggra2488.t1 ID=Ggra2488.t1|Name=Ggra2488.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1317bp|location=Sequence derived from alignment at tig00000005_pilon:474555..475871+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCAATACCACGCCGCCGTAGCCGCCCACTCCGCAAAAGACCTCGTTT
TGATGACCTTGCCGATGACGAGCCCGAGTCCTCCAGCGATTCAACCTCCT
CGGAGTCCTACGAAAGCTCTCCACCCCCAGACTTTGCTGCCGATGCCGAT
GACGAGGAAGGGTACATATCTGCCCCGGAGGAGACAGAATCTCCGAAACC
ACAGCCGAAACGTCCTTCTCGCCTTGCGAAACCGCGGTCTTTCATTGATG
CTGTCAGGCCGTATGTGGAACCTATGTCAAGAGATGCAATAAAGCTCAGC
CAGCTTACAATGGCGGAGATTACCGCTGGTGCCGCATACCGCGGTCCGCT
TGTCGTCACTGACGCAGACCGTGCAGAGGTCGAAGCAGCTCATGCTGCAG
CTGCAAGGCTCGCGCGCCATGAAAGCGATGATCTCACCGACGACCGGGAA
GAAGTAATACCTCAAATAGAAACGCGCGCGTTTTCGCTGAAGCGGCAGCG
GTTCAGGTCTCGCAACAGCGAATTATCGAACTCCGATTATGAAATGCTAT
CTCGCGAAAGTGGCTCTGACAGCGCTAGCGAACCAGAAGCTGATGGTTCA
CCACGCAGTTCTGCTCCAGCAGATGAGTCTCCTACTTCACGCTGTAACGA
AGAGAAACGGTACGAACTGCGACGTGAATCATCTGATTATGAGTCTGAGA
ACAATGGCTCTCCTTCGAAAAACGTAATACGCCTTGTTCGAAGCGATAAG
ATAGGACCGGGAAGGTGCATGAACGACAGTGACAATGAGTCCTGTGATAG
CCGCCCAGACCATATAACTAGCAAAGACGGTGAAGAATCCAGTTCCTCTG
CGTGTCAAACACTAACGGGCAACTTTCGCACATCGGACACATACGCTGTA
TCAAGATTGGACACACGGGCGAGAAATACACAGCGACACTCAGAGAGGAC
TGCACCGACCGCTTCCAACCGTGTAATTGACGTCATTGATCTTAGTCAAG
ATCACGACAGTAGCGCTTGCACTCGACTGCCGCGAACAGAAACGGTGAGA
GCACGAAGTGTGATGAGGCGTTCAACGAGCAGCGGGGGAAGAGGGCCATC
TACTCGATCTTGTGCAGGTCTCTCACAAGCTCCGGATGTCATTGACCTTT
GCGGTGATAGTGGCGAAGAGGGGAGCGGGGAGGAAGTGCCAAAACCGACC
GAAACCGAAGTGGTTGACTTGTGTTTGGACGGTCGGGGTGCAGAAGCTGC
CCAAATGCAGACGCTGCCAAAGCGTAGATTGCGAATCAGGCCAGGGTGGC
GACCGATAGATAGATAG

protein sequence of Ggra2488.t1

>Ggra2488.t1 ID=Ggra2488.t1|Name=Ggra2488.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=439bp
MPIPRRRSRPLRKRPRFDDLADDEPESSSDSTSSESYESSPPPDFAADAD
DEEGYISAPEETESPKPQPKRPSRLAKPRSFIDAVRPYVEPMSRDAIKLS
QLTMAEITAGAAYRGPLVVTDADRAEVEAAHAAAARLARHESDDLTDDRE
EVIPQIETRAFSLKRQRFRSRNSELSNSDYEMLSRESGSDSASEPEADGS
PRSSAPADESPTSRCNEEKRYELRRESSDYESENNGSPSKNVIRLVRSDK
IGPGRCMNDSDNESCDSRPDHITSKDGEESSSSACQTLTGNFRTSDTYAV
SRLDTRARNTQRHSERTAPTASNRVIDVIDLSQDHDSSACTRLPRTETVR
ARSVMRRSTSSGGRGPSTRSCAGLSQAPDVIDLCGDSGEEGSGEEVPKPT
ETEVVDLCLDGRGAEAAQMQTLPKRRLRIRPGWRPIDR*

mRNA from alignment at tig00000005_pilon:474555..475871+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra2488.t1 ID=Ggra2488.t1|Name=Ggra2488.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1317bp|location=Sequence derived from alignment at tig00000005_pilon:474555..475871+ (Gracilaria gracilis GNS1m male)
ATGCCAATACCACGCCGCCGTAGCCGCCCACTCCGCAAAAGACCTCGTTT
TGATGACCTTGCCGATGACGAGCCCGAGTCCTCCAGCGATTCAACCTCCT
CGGAGTCCTACGAAAGCTCTCCACCCCCAGACTTTGCTGCCGATGCCGAT
GACGAGGAAGGGTACATATCTGCCCCGGAGGAGACAGAATCTCCGAAACC
ACAGCCGAAACGTCCTTCTCGCCTTGCGAAACCGCGGTCTTTCATTGATG
CTGTCAGGCCGTATGTGGAACCTATGTCAAGAGATGCAATAAAGCTCAGC
CAGCTTACAATGGCGGAGATTACCGCTGGTGCCGCATACCGCGGTCCGCT
TGTCGTCACTGACGCAGACCGTGCAGAGGTCGAAGCAGCTCATGCTGCAG
CTGCAAGGCTCGCGCGCCATGAAAGCGATGATCTCACCGACGACCGGGAA
GAAGTAATACCTCAAATAGAAACGCGCGCGTTTTCGCTGAAGCGGCAGCG
GTTCAGGTCTCGCAACAGCGAATTATCGAACTCCGATTATGAAATGCTAT
CTCGCGAAAGTGGCTCTGACAGCGCTAGCGAACCAGAAGCTGATGGTTCA
CCACGCAGTTCTGCTCCAGCAGATGAGTCTCCTACTTCACGCTGTAACGA
AGAGAAACGGTACGAACTGCGACGTGAATCATCTGATTATGAGTCTGAGA
ACAATGGCTCTCCTTCGAAAAACGTAATACGCCTTGTTCGAAGCGATAAG
ATAGGACCGGGAAGGTGCATGAACGACAGTGACAATGAGTCCTGTGATAG
CCGCCCAGACCATATAACTAGCAAAGACGGTGAAGAATCCAGTTCCTCTG
CGTGTCAAACACTAACGGGCAACTTTCGCACATCGGACACATACGCTGTA
TCAAGATTGGACACACGGGCGAGAAATACACAGCGACACTCAGAGAGGAC
TGCACCGACCGCTTCCAACCGTGTAATTGACGTCATTGATCTTAGTCAAG
ATCACGACAGTAGCGCTTGCACTCGACTGCCGCGAACAGAAACGGTGAGA
GCACGAAGTGTGATGAGGCGTTCAACGAGCAGCGGGGGAAGAGGGCCATC
TACTCGATCTTGTGCAGGTCTCTCACAAGCTCCGGATGTCATTGACCTTT
GCGGTGATAGTGGCGAAGAGGGGAGCGGGGAGGAAGTGCCAAAACCGACC
GAAACCGAAGTGGTTGACTTGTGTTTGGACGGTCGGGGTGCAGAAGCTGC
CCAAATGCAGACGCTGCCAAAGCGTAGATTGCGAATCAGGCCAGGGTGGC
GACCGATAGATAGATAG

Coding sequence (CDS) from alignment at tig00000005_pilon:474555..475871+

>Ggra2488.t1 ID=Ggra2488.t1|Name=Ggra2488.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1317bp|location=Sequence derived from alignment at tig00000005_pilon:474555..475871+ (Gracilaria gracilis GNS1m male)
ATGCCAATACCACGCCGCCGTAGCCGCCCACTCCGCAAAAGACCTCGTTT
TGATGACCTTGCCGATGACGAGCCCGAGTCCTCCAGCGATTCAACCTCCT
CGGAGTCCTACGAAAGCTCTCCACCCCCAGACTTTGCTGCCGATGCCGAT
GACGAGGAAGGGTACATATCTGCCCCGGAGGAGACAGAATCTCCGAAACC
ACAGCCGAAACGTCCTTCTCGCCTTGCGAAACCGCGGTCTTTCATTGATG
CTGTCAGGCCGTATGTGGAACCTATGTCAAGAGATGCAATAAAGCTCAGC
CAGCTTACAATGGCGGAGATTACCGCTGGTGCCGCATACCGCGGTCCGCT
TGTCGTCACTGACGCAGACCGTGCAGAGGTCGAAGCAGCTCATGCTGCAG
CTGCAAGGCTCGCGCGCCATGAAAGCGATGATCTCACCGACGACCGGGAA
GAAGTAATACCTCAAATAGAAACGCGCGCGTTTTCGCTGAAGCGGCAGCG
GTTCAGGTCTCGCAACAGCGAATTATCGAACTCCGATTATGAAATGCTAT
CTCGCGAAAGTGGCTCTGACAGCGCTAGCGAACCAGAAGCTGATGGTTCA
CCACGCAGTTCTGCTCCAGCAGATGAGTCTCCTACTTCACGCTGTAACGA
AGAGAAACGGTACGAACTGCGACGTGAATCATCTGATTATGAGTCTGAGA
ACAATGGCTCTCCTTCGAAAAACGTAATACGCCTTGTTCGAAGCGATAAG
ATAGGACCGGGAAGGTGCATGAACGACAGTGACAATGAGTCCTGTGATAG
CCGCCCAGACCATATAACTAGCAAAGACGGTGAAGAATCCAGTTCCTCTG
CGTGTCAAACACTAACGGGCAACTTTCGCACATCGGACACATACGCTGTA
TCAAGATTGGACACACGGGCGAGAAATACACAGCGACACTCAGAGAGGAC
TGCACCGACCGCTTCCAACCGTGTAATTGACGTCATTGATCTTAGTCAAG
ATCACGACAGTAGCGCTTGCACTCGACTGCCGCGAACAGAAACGGTGAGA
GCACGAAGTGTGATGAGGCGTTCAACGAGCAGCGGGGGAAGAGGGCCATC
TACTCGATCTTGTGCAGGTCTCTCACAAGCTCCGGATGTCATTGACCTTT
GCGGTGATAGTGGCGAAGAGGGGAGCGGGGAGGAAGTGCCAAAACCGACC
GAAACCGAAGTGGTTGACTTGTGTTTGGACGGTCGGGGTGCAGAAGCTGC
CCAAATGCAGACGCTGCCAAAGCGTAGATTGCGAATCAGGCCAGGGTGGC
GACCGATAGATAGATAG