Ggra2485.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra2485.t1
Unique Name	Ggra2485.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	553

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000005_pilon	contig	tig00000005_pilon:466864..468522 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra2485	Ggra2485	Gracilaria gracilis GNS1m male	gene	tig00000005_pilon 466864..468522 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2485.t1.stop1	Ggra2485.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000005_pilon 466864..466866 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2485.t1.CDS1	Ggra2485.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000005_pilon 466864..468522 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2485.t1.exon1	Ggra2485.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000005_pilon 466864..468522 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2485.t1.start1	Ggra2485.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000005_pilon 468520..468522 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2485.t1	Ggra2485.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000005_pilon 466864..468522 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000005_pilon:466864..468522-
coding sequence from alignment at tig00000005_pilon:466864..468522-

mRNA sequence

>Ggra2485.t1 ID=Ggra2485.t1|Name=Ggra2485.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=553bp
MQNGVRIRLNPLGGNQLNIREALRLYLPTLATPSVSDDDEDQPTSPSSQP
RTRTRAIVDDYDYEDDFIDDGDVDQPDDDEKQQAEFAGFGGFWVGTDDTA
KNHPLVDGNRLGNVVLEKLPQRHSRPPSQPQCQSKSPPPAATSAPSQKPV
NSQQLPSSSGPQPSPRAAPNAPPNPRPKAPPAASTAVVASSDVLHTVQQA
AVHAKTAPRPSNLQPTEHANQQRPVVGTPVNTSNKAAGVKGVASGNAKAV
GNAKARSTTNTGASGKVVNTNVKTTTATGKAGGAANGAGSGVTKTWTASR
PSKSAQALEAALNALQHFCAMKFSDKKPKLNDPVMQDHLHALLRAAISAG
EAKLFSDIVREKRVVALSDQLWTTMNKCLRTKRATLETLGHALIWSAREK
QREKEVGRVEEVIKGYLQEKRGGAEAVRVEWSDELREMLYEWFCKKKELL
AARNQLGSRVKSVKKSVNSWVTSLKKSAFQGFSVAEEEIVRAFRAVEEKN
KAKKRKREEERGLQKKLKKERMDKEAAPRGEGSAAVRGNGGAVASGEVIE
LD*

spliced messenger RNA

>Ggra2485.t1 ID=Ggra2485.t1|Name=Ggra2485.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1659bp|location=Sequence derived from alignment at tig00000005_pilon:466864..468522- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAAAACGGCGTCCGAATTCGCCTCAATCCCCTGGGCGGTAATCAGCT
CAACATTCGTGAGGCGCTACGGCTGTATTTACCAACTTTGGCCACGCCGT
CTGTCAGCGATGACGATGAGGACCAACCGACCTCGCCAAGTTCACAACCG
CGCACTCGAACACGCGCAATTGTCGACGACTACGACTACGAAGACGACTT
CATTGATGATGGCGATGTCGACCAACCCGACGACGACGAAAAGCAGCAAG
CAGAGTTTGCCGGATTCGGTGGGTTCTGGGTCGGCACAGATGATACTGCC
AAGAATCATCCTCTGGTAGACGGCAATCGTCTTGGAAACGTCGTTCTGGA
GAAACTACCGCAGCGACACTCGCGACCTCCCTCTCAGCCACAATGCCAGT
CTAAATCGCCTCCACCAGCGGCGACCTCAGCGCCTTCTCAAAAGCCCGTG
AATTCACAACAGCTACCGTCTTCTTCCGGACCGCAACCATCACCACGTGC
TGCTCCGAACGCGCCCCCGAATCCGCGTCCGAAAGCTCCACCTGCAGCTT
CGACGGCTGTTGTAGCCTCGAGTGACGTGCTGCATACTGTTCAACAAGCA
GCTGTGCACGCGAAAACAGCGCCCAGACCAAGCAACTTGCAGCCCACAGA
GCACGCTAACCAGCAACGGCCCGTTGTGGGAACACCCGTGAATACGAGTA
ACAAGGCAGCCGGGGTTAAGGGCGTTGCGTCGGGAAATGCTAAAGCAGTT
GGAAATGCAAAAGCTCGGAGCACGACTAATACGGGCGCATCAGGTAAAGT
GGTGAACACCAACGTAAAGACAACAACTGCGACTGGGAAGGCGGGTGGGG
CGGCAAACGGCGCAGGTTCAGGTGTAACAAAAACTTGGACGGCATCGCGC
CCAAGCAAATCGGCACAGGCGCTAGAAGCAGCGTTGAATGCGTTGCAGCA
CTTCTGCGCAATGAAATTCAGTGATAAGAAACCGAAGCTAAATGATCCCG
TGATGCAAGACCATTTGCATGCGCTGCTGCGCGCGGCGATTTCAGCCGGG
GAGGCCAAGTTGTTCTCGGATATTGTAAGAGAAAAGCGAGTGGTTGCTCT
GAGTGATCAGTTGTGGACGACGATGAACAAGTGCCTACGAACAAAACGAG
CCACTCTTGAGACATTAGGACATGCATTAATATGGAGCGCTAGGGAGAAA
CAACGCGAGAAAGAAGTGGGCAGAGTGGAGGAGGTAATCAAGGGGTACCT
ACAAGAGAAGCGAGGAGGAGCAGAGGCGGTGCGCGTTGAGTGGAGCGATG
AATTGCGGGAGATGCTTTACGAGTGGTTTTGCAAGAAAAAAGAGCTTCTG
GCGGCGCGAAATCAACTGGGGAGCCGGGTGAAGAGCGTGAAGAAGAGTGT
GAACAGTTGGGTGACTTCGCTGAAGAAGAGCGCGTTCCAAGGGTTCTCGG
TGGCGGAGGAGGAAATCGTGCGCGCGTTCCGCGCCGTGGAGGAGAAAAAC
AAGGCGAAAAAACGGAAACGCGAGGAGGAGCGCGGGCTGCAGAAGAAGTT
GAAGAAGGAGCGCATGGACAAGGAGGCGGCGCCACGCGGCGAGGGGAGCG
CAGCGGTGCGCGGCAATGGCGGCGCCGTTGCCAGCGGGGAGGTGATCGAG
CTGGACTGA

protein sequence of Ggra2485.t1

>Ggra2485.t1 ID=Ggra2485.t1|Name=Ggra2485.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=553bp
MQNGVRIRLNPLGGNQLNIREALRLYLPTLATPSVSDDDEDQPTSPSSQP
RTRTRAIVDDYDYEDDFIDDGDVDQPDDDEKQQAEFAGFGGFWVGTDDTA
KNHPLVDGNRLGNVVLEKLPQRHSRPPSQPQCQSKSPPPAATSAPSQKPV
NSQQLPSSSGPQPSPRAAPNAPPNPRPKAPPAASTAVVASSDVLHTVQQA
AVHAKTAPRPSNLQPTEHANQQRPVVGTPVNTSNKAAGVKGVASGNAKAV
GNAKARSTTNTGASGKVVNTNVKTTTATGKAGGAANGAGSGVTKTWTASR
PSKSAQALEAALNALQHFCAMKFSDKKPKLNDPVMQDHLHALLRAAISAG
EAKLFSDIVREKRVVALSDQLWTTMNKCLRTKRATLETLGHALIWSAREK
QREKEVGRVEEVIKGYLQEKRGGAEAVRVEWSDELREMLYEWFCKKKELL
AARNQLGSRVKSVKKSVNSWVTSLKKSAFQGFSVAEEEIVRAFRAVEEKN
KAKKRKREEERGLQKKLKKERMDKEAAPRGEGSAAVRGNGGAVASGEVIE
LD*

mRNA from alignment at tig00000005_pilon:466864..468522-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra2485.t1 ID=Ggra2485.t1|Name=Ggra2485.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1659bp|location=Sequence derived from alignment at tig00000005_pilon:466864..468522- (Gracilaria gracilis GNS1m male)
ATGCAAAACGGCGTCCGAATTCGCCTCAATCCCCTGGGCGGTAATCAGCT
CAACATTCGTGAGGCGCTACGGCTGTATTTACCAACTTTGGCCACGCCGT
CTGTCAGCGATGACGATGAGGACCAACCGACCTCGCCAAGTTCACAACCG
CGCACTCGAACACGCGCAATTGTCGACGACTACGACTACGAAGACGACTT
CATTGATGATGGCGATGTCGACCAACCCGACGACGACGAAAAGCAGCAAG
CAGAGTTTGCCGGATTCGGTGGGTTCTGGGTCGGCACAGATGATACTGCC
AAGAATCATCCTCTGGTAGACGGCAATCGTCTTGGAAACGTCGTTCTGGA
GAAACTACCGCAGCGACACTCGCGACCTCCCTCTCAGCCACAATGCCAGT
CTAAATCGCCTCCACCAGCGGCGACCTCAGCGCCTTCTCAAAAGCCCGTG
AATTCACAACAGCTACCGTCTTCTTCCGGACCGCAACCATCACCACGTGC
TGCTCCGAACGCGCCCCCGAATCCGCGTCCGAAAGCTCCACCTGCAGCTT
CGACGGCTGTTGTAGCCTCGAGTGACGTGCTGCATACTGTTCAACAAGCA
GCTGTGCACGCGAAAACAGCGCCCAGACCAAGCAACTTGCAGCCCACAGA
GCACGCTAACCAGCAACGGCCCGTTGTGGGAACACCCGTGAATACGAGTA
ACAAGGCAGCCGGGGTTAAGGGCGTTGCGTCGGGAAATGCTAAAGCAGTT
GGAAATGCAAAAGCTCGGAGCACGACTAATACGGGCGCATCAGGTAAAGT
GGTGAACACCAACGTAAAGACAACAACTGCGACTGGGAAGGCGGGTGGGG
CGGCAAACGGCGCAGGTTCAGGTGTAACAAAAACTTGGACGGCATCGCGC
CCAAGCAAATCGGCACAGGCGCTAGAAGCAGCGTTGAATGCGTTGCAGCA
CTTCTGCGCAATGAAATTCAGTGATAAGAAACCGAAGCTAAATGATCCCG
TGATGCAAGACCATTTGCATGCGCTGCTGCGCGCGGCGATTTCAGCCGGG
GAGGCCAAGTTGTTCTCGGATATTGTAAGAGAAAAGCGAGTGGTTGCTCT
GAGTGATCAGTTGTGGACGACGATGAACAAGTGCCTACGAACAAAACGAG
CCACTCTTGAGACATTAGGACATGCATTAATATGGAGCGCTAGGGAGAAA
CAACGCGAGAAAGAAGTGGGCAGAGTGGAGGAGGTAATCAAGGGGTACCT
ACAAGAGAAGCGAGGAGGAGCAGAGGCGGTGCGCGTTGAGTGGAGCGATG
AATTGCGGGAGATGCTTTACGAGTGGTTTTGCAAGAAAAAAGAGCTTCTG
GCGGCGCGAAATCAACTGGGGAGCCGGGTGAAGAGCGTGAAGAAGAGTGT
GAACAGTTGGGTGACTTCGCTGAAGAAGAGCGCGTTCCAAGGGTTCTCGG
TGGCGGAGGAGGAAATCGTGCGCGCGTTCCGCGCCGTGGAGGAGAAAAAC
AAGGCGAAAAAACGGAAACGCGAGGAGGAGCGCGGGCTGCAGAAGAAGTT
GAAGAAGGAGCGCATGGACAAGGAGGCGGCGCCACGCGGCGAGGGGAGCG
CAGCGGTGCGCGGCAATGGCGGCGCCGTTGCCAGCGGGGAGGTGATCGAG
CTGGACTGA

Coding sequence (CDS) from alignment at tig00000005_pilon:466864..468522-

>Ggra2485.t1 ID=Ggra2485.t1|Name=Ggra2485.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1659bp|location=Sequence derived from alignment at tig00000005_pilon:466864..468522- (Gracilaria gracilis GNS1m male)
ATGCAAAACGGCGTCCGAATTCGCCTCAATCCCCTGGGCGGTAATCAGCT
CAACATTCGTGAGGCGCTACGGCTGTATTTACCAACTTTGGCCACGCCGT
CTGTCAGCGATGACGATGAGGACCAACCGACCTCGCCAAGTTCACAACCG
CGCACTCGAACACGCGCAATTGTCGACGACTACGACTACGAAGACGACTT
CATTGATGATGGCGATGTCGACCAACCCGACGACGACGAAAAGCAGCAAG
CAGAGTTTGCCGGATTCGGTGGGTTCTGGGTCGGCACAGATGATACTGCC
AAGAATCATCCTCTGGTAGACGGCAATCGTCTTGGAAACGTCGTTCTGGA
GAAACTACCGCAGCGACACTCGCGACCTCCCTCTCAGCCACAATGCCAGT
CTAAATCGCCTCCACCAGCGGCGACCTCAGCGCCTTCTCAAAAGCCCGTG
AATTCACAACAGCTACCGTCTTCTTCCGGACCGCAACCATCACCACGTGC
TGCTCCGAACGCGCCCCCGAATCCGCGTCCGAAAGCTCCACCTGCAGCTT
CGACGGCTGTTGTAGCCTCGAGTGACGTGCTGCATACTGTTCAACAAGCA
GCTGTGCACGCGAAAACAGCGCCCAGACCAAGCAACTTGCAGCCCACAGA
GCACGCTAACCAGCAACGGCCCGTTGTGGGAACACCCGTGAATACGAGTA
ACAAGGCAGCCGGGGTTAAGGGCGTTGCGTCGGGAAATGCTAAAGCAGTT
GGAAATGCAAAAGCTCGGAGCACGACTAATACGGGCGCATCAGGTAAAGT
GGTGAACACCAACGTAAAGACAACAACTGCGACTGGGAAGGCGGGTGGGG
CGGCAAACGGCGCAGGTTCAGGTGTAACAAAAACTTGGACGGCATCGCGC
CCAAGCAAATCGGCACAGGCGCTAGAAGCAGCGTTGAATGCGTTGCAGCA
CTTCTGCGCAATGAAATTCAGTGATAAGAAACCGAAGCTAAATGATCCCG
TGATGCAAGACCATTTGCATGCGCTGCTGCGCGCGGCGATTTCAGCCGGG
GAGGCCAAGTTGTTCTCGGATATTGTAAGAGAAAAGCGAGTGGTTGCTCT
GAGTGATCAGTTGTGGACGACGATGAACAAGTGCCTACGAACAAAACGAG
CCACTCTTGAGACATTAGGACATGCATTAATATGGAGCGCTAGGGAGAAA
CAACGCGAGAAAGAAGTGGGCAGAGTGGAGGAGGTAATCAAGGGGTACCT
ACAAGAGAAGCGAGGAGGAGCAGAGGCGGTGCGCGTTGAGTGGAGCGATG
AATTGCGGGAGATGCTTTACGAGTGGTTTTGCAAGAAAAAAGAGCTTCTG
GCGGCGCGAAATCAACTGGGGAGCCGGGTGAAGAGCGTGAAGAAGAGTGT
GAACAGTTGGGTGACTTCGCTGAAGAAGAGCGCGTTCCAAGGGTTCTCGG
TGGCGGAGGAGGAAATCGTGCGCGCGTTCCGCGCCGTGGAGGAGAAAAAC
AAGGCGAAAAAACGGAAACGCGAGGAGGAGCGCGGGCTGCAGAAGAAGTT
GAAGAAGGAGCGCATGGACAAGGAGGCGGCGCCACGCGGCGAGGGGAGCG
CAGCGGTGCGCGGCAATGGCGGCGCCGTTGCCAGCGGGGAGGTGATCGAG
CTGGACTGA