Ggra2478.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra2478.t1
Unique Name	Ggra2478.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	412

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000005_pilon	contig	tig00000005_pilon:434036..435271 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	2850.Phatr40254
PFAMs	DDE_Tnp_1_7
Max annot lvl	2759\|Eukaryota
Evalue	7.12e-105
EggNOG OGs	2E2A4@1\|root,2S9I4@2759\|Eukaryota,2XHDS@2836\|Bacillariophyta
Description	Transposase IS4
COG category	S

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra2478	Ggra2478	Gracilaria gracilis GNS1m male	gene	tig00000005_pilon 434036..435271 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2478.t1.start1	Ggra2478.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000005_pilon 434036..434038 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2478.t1.CDS1	Ggra2478.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000005_pilon 434036..435271 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2478.t1.exon1	Ggra2478.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000005_pilon 434036..435271 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2478.t1.stop1	Ggra2478.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000005_pilon 435269..435271 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2478.t1	Ggra2478.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000005_pilon 434036..435271 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000005_pilon:434036..435271+
coding sequence from alignment at tig00000005_pilon:434036..435271+

mRNA sequence

>Ggra2478.t1 ID=Ggra2478.t1|Name=Ggra2478.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=412bp
MARWSLVNGFVEAINQHRLSFVTPSHALFVDECMSRWYALGGDWIDVGLP
HYTALDRKPENGLEMKTVCCGRSGIMLKIELNMGSQMPALEFSADHGHGT
AVLLRLVQPWFGSEALVCADSFFASVHTANSLLQNGLRFTGVIKTATRGY
PMKHLSEITLSNRSEFVSMVSKGTTINTDLMAVMWVDRERRYFISTSGTV
NPGTAISRERWRREGNISKKIELEVSIPEVCEEYYKTCSMIDRHNRSRQD
DFKLEKKIEVKEWSFRVNCSLLAICIVNAWNLYKASSGGRQLKSPDNFYC
ELADELIENTWDQTGLIERNKKEVEPTDPHPKPAGTDIHLMQTRKKRKRN
DGSISKALYQGRCNSCGGNKKSKFICSDFHLRKNKEVYLCHTGTGRDCFA
LHLDNCHGVTL*

spliced messenger RNA

>Ggra2478.t1 ID=Ggra2478.t1|Name=Ggra2478.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1236bp|location=Sequence derived from alignment at tig00000005_pilon:434036..435271+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
atggcgcggtggagcctggtaaatggttttgtggaagcaattaaccaaca
ccgattatcatttgtcactccatctcatgctctttttgttgacgaatgca
tgtcacggtggtacgcattgggaggtgactggatcgatgtaggccttcct
cactatacagccttggatcgcaaacccgaaaatggattagaaatgaagac
ggtttgctgtggaagaagtggcattatgttgaaaattgagctgaatatgg
gatcccaaatgcctgctttagagttttctgcagatcatggacatggcact
gcagttctattacggctggtgcagccatggtttggatccgaggcactagt
gtgtgcagattcattctttgccagtgtgcacacggcaaattctcttctac
aaaatggactgagatttactggagttataaaaactgcaactcgaggctat
ccgatgaagcacctttctgaaatcactttatcgaacagaagtgaatttgt
gtctatggtatcaaagggaactaccattaataccgatttaatggcagtca
tgtgggtggatagagaacgaaggtactttatatcaacttctggaacagtt
aatcctggtactgctatatcgagggaaagatggagaagggaaggcaacat
ttccaaaaagattgaactcgaggtttctattcctgaagtatgtgaggaat
attataaaacatgttcaatgatcgatagacataatcgatcccgtcaagat
gattttaagcttgagaagaaaatcgaggtgaaagagtggtcttttcgtgt
caattgctctctactggctatctgtatcgtgaatgcttggaatctttata
aagcatctagtggtggccgccaattgaagagccctgacaatttttattgt
gaattagctgacgaactgatcgaaaacacttgggatcaaacaggtcttat
tgaaagaaataagaaagaggttgaaccaactgatccgcacccaaaaccgg
ctggaactgatattcatttgatgcaaacaagaaagaagaggaaacgaaat
gacggaagcatatcgaaagctctgtaccaaggtcgctgcaactcatgtgg
aggaaataagaagtctaagtttatatgttctgacttccatttaaggaaga
acaaagaagtttatttgtgccacactggtaccggtagagattgttttgct
cttcatttagacaattgtcacggtgttacgctttag

protein sequence of Ggra2478.t1

>Ggra2478.t1 ID=Ggra2478.t1|Name=Ggra2478.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=412bp
MARWSLVNGFVEAINQHRLSFVTPSHALFVDECMSRWYALGGDWIDVGLP
HYTALDRKPENGLEMKTVCCGRSGIMLKIELNMGSQMPALEFSADHGHGT
AVLLRLVQPWFGSEALVCADSFFASVHTANSLLQNGLRFTGVIKTATRGY
PMKHLSEITLSNRSEFVSMVSKGTTINTDLMAVMWVDRERRYFISTSGTV
NPGTAISRERWRREGNISKKIELEVSIPEVCEEYYKTCSMIDRHNRSRQD
DFKLEKKIEVKEWSFRVNCSLLAICIVNAWNLYKASSGGRQLKSPDNFYC
ELADELIENTWDQTGLIERNKKEVEPTDPHPKPAGTDIHLMQTRKKRKRN
DGSISKALYQGRCNSCGGNKKSKFICSDFHLRKNKEVYLCHTGTGRDCFA
LHLDNCHGVTL*

mRNA from alignment at tig00000005_pilon:434036..435271+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra2478.t1 ID=Ggra2478.t1|Name=Ggra2478.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1236bp|location=Sequence derived from alignment at tig00000005_pilon:434036..435271+ (Gracilaria gracilis GNS1m male)
atggcgcggtggagcctggtaaatggttttgtggaagcaattaaccaaca
ccgattatcatttgtcactccatctcatgctctttttgttgacgaatgca
tgtcacggtggtacgcattgggaggtgactggatcgatgtaggccttcct
cactatacagccttggatcgcaaacccgaaaatggattagaaatgaagac
ggtttgctgtggaagaagtggcattatgttgaaaattgagctgaatatgg
gatcccaaatgcctgctttagagttttctgcagatcatggacatggcact
gcagttctattacggctggtgcagccatggtttggatccgaggcactagt
gtgtgcagattcattctttgccagtgtgcacacggcaaattctcttctac
aaaatggactgagatttactggagttataaaaactgcaactcgaggctat
ccgatgaagcacctttctgaaatcactttatcgaacagaagtgaatttgt
gtctatggtatcaaagggaactaccattaataccgatttaatggcagtca
tgtgggtggatagagaacgaaggtactttatatcaacttctggaacagtt
aatcctggtactgctatatcgagggaaagatggagaagggaaggcaacat
ttccaaaaagattgaactcgaggtttctattcctgaagtatgtgaggaat
attataaaacatgttcaatgatcgatagacataatcgatcccgtcaagat
gattttaagcttgagaagaaaatcgaggtgaaagagtggtcttttcgtgt
caattgctctctactggctatctgtatcgtgaatgcttggaatctttata
aagcatctagtggtggccgccaattgaagagccctgacaatttttattgt
gaattagctgacgaactgatcgaaaacacttgggatcaaacaggtcttat
tgaaagaaataagaaagaggttgaaccaactgatccgcacccaaaaccgg
ctggaactgatattcatttgatgcaaacaagaaagaagaggaaacgaaat
gacggaagcatatcgaaagctctgtaccaaggtcgctgcaactcatgtgg
aggaaataagaagtctaagtttatatgttctgacttccatttaaggaaga
acaaagaagtttatttgtgccacactggtaccggtagagattgttttgct
cttcatttagacaattgtcacggtgttacgctttag

Coding sequence (CDS) from alignment at tig00000005_pilon:434036..435271+

>Ggra2478.t1 ID=Ggra2478.t1|Name=Ggra2478.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1236bp|location=Sequence derived from alignment at tig00000005_pilon:434036..435271+ (Gracilaria gracilis GNS1m male)
atggcgcggtggagcctggtaaatggttttgtggaagcaattaaccaaca
ccgattatcatttgtcactccatctcatgctctttttgttgacgaatgca
tgtcacggtggtacgcattgggaggtgactggatcgatgtaggccttcct
cactatacagccttggatcgcaaacccgaaaatggattagaaatgaagac
ggtttgctgtggaagaagtggcattatgttgaaaattgagctgaatatgg
gatcccaaatgcctgctttagagttttctgcagatcatggacatggcact
gcagttctattacggctggtgcagccatggtttggatccgaggcactagt
gtgtgcagattcattctttgccagtgtgcacacggcaaattctcttctac
aaaatggactgagatttactggagttataaaaactgcaactcgaggctat
ccgatgaagcacctttctgaaatcactttatcgaacagaagtgaatttgt
gtctatggtatcaaagggaactaccattaataccgatttaatggcagtca
tgtgggtggatagagaacgaaggtactttatatcaacttctggaacagtt
aatcctggtactgctatatcgagggaaagatggagaagggaaggcaacat
ttccaaaaagattgaactcgaggtttctattcctgaagtatgtgaggaat
attataaaacatgttcaatgatcgatagacataatcgatcccgtcaagat
gattttaagcttgagaagaaaatcgaggtgaaagagtggtcttttcgtgt
caattgctctctactggctatctgtatcgtgaatgcttggaatctttata
aagcatctagtggtggccgccaattgaagagccctgacaatttttattgt
gaattagctgacgaactgatcgaaaacacttgggatcaaacaggtcttat
tgaaagaaataagaaagaggttgaaccaactgatccgcacccaaaaccgg
ctggaactgatattcatttgatgcaaacaagaaagaagaggaaacgaaat
gacggaagcatatcgaaagctctgtaccaaggtcgctgcaactcatgtgg
aggaaataagaagtctaagtttatatgttctgacttccatttaaggaaga
acaaagaagtttatttgtgccacactggtaccggtagagattgttttgct
cttcatttagacaattgtcacggtgttacgctttag