Ggra2476.t2 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra2476.t2
Unique NameGgra2476.t2
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length247
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000005_piloncontigtig00000005_pilon:430109..430921 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog41875.XP_007510287.1
PFAMsNUDIX
Max annot lvl3041|Chlorophyta
KEGG rclassRC00002
KEGG koko:K01515,ko:K13987
KEGG ReactionR01054,R11553
KEGG Pathwayko00230,map00230
Evalue2.06e-33
EggNOG OGsCOG0494@1|root,KOG3041@2759|Eukaryota,37XEU@33090|Viridiplantae,34IJM@3041|Chlorophyta
EC2.7.7.96,3.6.1.13,3.6.1.58
DescriptionNUDIX domain
COG categoryL
BRITEko00000,ko00001,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra2476Ggra2476Gracilaria gracilis GNS1m malegenetig00000005_pilon 430109..430921 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2476.t2Ggra2476.t2Gracilaria gracilis GNS1m malepolypeptidetig00000005_pilon 430109..430921 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2476.t2.start1Ggra2476.t2.start1Gracilaria gracilis GNS1m malestart_codontig00000005_pilon 430109..430111 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2476.t2.CDS1Ggra2476.t2.CDS1Gracilaria gracilis GNS1m maleCDStig00000005_pilon 430109..430121 +
Ggra2476.t2.CDS2Ggra2476.t2.CDS2Gracilaria gracilis GNS1m maleCDStig00000005_pilon 430194..430921 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2476.t2.exon1Ggra2476.t2.exon1Gracilaria gracilis GNS1m maleexontig00000005_pilon 430109..430121 +
Ggra2476.t2.exon2Ggra2476.t2.exon2Gracilaria gracilis GNS1m maleexontig00000005_pilon 430194..430921 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2476.t2.intron1Ggra2476.t2.intron1Gracilaria gracilis GNS1m maleintrontig00000005_pilon 430122..430193 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2476.t2.stop1Ggra2476.t2.stop1Gracilaria gracilis GNS1m malestop_codontig00000005_pilon 430919..430921 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra2476.t2 ID=Ggra2476.t2|Name=Ggra2476.t2|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=247bp
MRKSVYLVLFFETVATSISKIISKMSAESKPPIASLVRCEAKVHSCVGGS
VDLSRRETLASTRWLKLESLLYRFEHDKPNEFARRWDVANRTTRTSVGVD
AVVVLARLCLADDVPRILLVKQFRPPLNAVSVELPAGLVDEGETLEQSAL
RELVEETGFRGRVCRVHSGAALSPGLSSENVALVEVEIEGATQGQKLEGT
ENIEVVSVPLNRMEEALDHMIETEGVVVMHAVSTLSVGLRLGLSPR*
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spliced messenger RNA

>Ggra2476.t2 ID=Ggra2476.t2|Name=Ggra2476.t2|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=741bp|location=Sequence derived from alignment at tig00000005_pilon:430109..430921+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGAAAGTCAGTCTATTTAGTGCTTTTCTTTGAAACAGTTGCGACAAG
CATCTCGAAAATCATCTCGAAAATGTCCGCGGAGTCAAAACCCCCCATCG
CCTCTCTTGTACGGTGTGAGGCAAAAGTACATTCATGTGTTGGAGGCAGC
GTAGATCTGTCTCGTAGAGAAACGCTTGCGTCTACCAGATGGCTCAAGTT
GGAATCATTGCTGTATCGCTTTGAGCACGATAAGCCGAATGAATTCGCGC
GACGATGGGATGTTGCAAATCGCACTACACGTACGTCTGTTGGTGTCGAT
GCCGTCGTAGTTTTGGCCCGTCTTTGTTTGGCAGATGACGTTCCCCGAAT
ACTTTTGGTTAAACAGTTTCGCCCACCTCTCAATGCTGTAAGCGTGGAAC
TACCCGCCGGACTCGTGGATGAAGGAGAAACTCTTGAACAGTCAGCATTA
AGGGAACTGGTCGAGGAAACTGGGTTTCGTGGACGTGTTTGTCGTGTGCA
CTCTGGCGCTGCACTCTCACCCGGGTTAAGTTCTGAGAATGTGGCTCTGG
TTGAAGTTGAAATTGAGGGAGCAACTCAGGGACAGAAACTCGAAGGAACT
GAGAATATTGAGGTAGTCAGTGTACCTTTGAACCGAATGGAAGAGGCGTT
GGACCATATGATCGAGACGGAAGGTGTTGTGGTCATGCATGCTGTCTCAA
CCCTTTCAGTCGGACTCCGGCTGGGGTTGTCGCCGCGGTAA
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protein sequence of Ggra2476.t2

>Ggra2476.t2 ID=Ggra2476.t2|Name=Ggra2476.t2|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=247bp
MRKSVYLVLFFETVATSISKIISKMSAESKPPIASLVRCEAKVHSCVGGS
VDLSRRETLASTRWLKLESLLYRFEHDKPNEFARRWDVANRTTRTSVGVD
AVVVLARLCLADDVPRILLVKQFRPPLNAVSVELPAGLVDEGETLEQSAL
RELVEETGFRGRVCRVHSGAALSPGLSSENVALVEVEIEGATQGQKLEGT
ENIEVVSVPLNRMEEALDHMIETEGVVVMHAVSTLSVGLRLGLSPR*
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mRNA from alignment at tig00000005_pilon:430109..430921+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra2476.t2 ID=Ggra2476.t2|Name=Ggra2476.t2|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=813bp|location=Sequence derived from alignment at tig00000005_pilon:430109..430921+ (Gracilaria gracilis GNS1m male)
ATGAGAAAGTCAGGTATGAAAGTAACTGTTGCAATGATTAGCTCCGTCTG
AAGAACCGCGAAGCTCGTGATTTCATCTCTCTAAGTCTATTTAGTGCTTT
TCTTTGAAACAGTTGCGACAAGCATCTCGAAAATCATCTCGAAAATGTCC
GCGGAGTCAAAACCCCCCATCGCCTCTCTTGTACGGTGTGAGGCAAAAGT
ACATTCATGTGTTGGAGGCAGCGTAGATCTGTCTCGTAGAGAAACGCTTG
CGTCTACCAGATGGCTCAAGTTGGAATCATTGCTGTATCGCTTTGAGCAC
GATAAGCCGAATGAATTCGCGCGACGATGGGATGTTGCAAATCGCACTAC
ACGTACGTCTGTTGGTGTCGATGCCGTCGTAGTTTTGGCCCGTCTTTGTT
TGGCAGATGACGTTCCCCGAATACTTTTGGTTAAACAGTTTCGCCCACCT
CTCAATGCTGTAAGCGTGGAACTACCCGCCGGACTCGTGGATGAAGGAGA
AACTCTTGAACAGTCAGCATTAAGGGAACTGGTCGAGGAAACTGGGTTTC
GTGGACGTGTTTGTCGTGTGCACTCTGGCGCTGCACTCTCACCCGGGTTA
AGTTCTGAGAATGTGGCTCTGGTTGAAGTTGAAATTGAGGGAGCAACTCA
GGGACAGAAACTCGAAGGAACTGAGAATATTGAGGTAGTCAGTGTACCTT
TGAACCGAATGGAAGAGGCGTTGGACCATATGATCGAGACGGAAGGTGTT
GTGGTCATGCATGCTGTCTCAACCCTTTCAGTCGGACTCCGGCTGGGGTT
GTCGCCGCGGTAA
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Coding sequence (CDS) from alignment at tig00000005_pilon:430109..430921+

>Ggra2476.t2 ID=Ggra2476.t2|Name=Ggra2476.t2|organism=Gracilaria gracilis GNS1m male|type=CDS|length=741bp|location=Sequence derived from alignment at tig00000005_pilon:430109..430921+ (Gracilaria gracilis GNS1m male)
ATGAGAAAGTCAGTCTATTTAGTGCTTTTCTTTGAAACAGTTGCGACAAG
CATCTCGAAAATCATCTCGAAAATGTCCGCGGAGTCAAAACCCCCCATCG
CCTCTCTTGTACGGTGTGAGGCAAAAGTACATTCATGTGTTGGAGGCAGC
GTAGATCTGTCTCGTAGAGAAACGCTTGCGTCTACCAGATGGCTCAAGTT
GGAATCATTGCTGTATCGCTTTGAGCACGATAAGCCGAATGAATTCGCGC
GACGATGGGATGTTGCAAATCGCACTACACGTACGTCTGTTGGTGTCGAT
GCCGTCGTAGTTTTGGCCCGTCTTTGTTTGGCAGATGACGTTCCCCGAAT
ACTTTTGGTTAAACAGTTTCGCCCACCTCTCAATGCTGTAAGCGTGGAAC
TACCCGCCGGACTCGTGGATGAAGGAGAAACTCTTGAACAGTCAGCATTA
AGGGAACTGGTCGAGGAAACTGGGTTTCGTGGACGTGTTTGTCGTGTGCA
CTCTGGCGCTGCACTCTCACCCGGGTTAAGTTCTGAGAATGTGGCTCTGG
TTGAAGTTGAAATTGAGGGAGCAACTCAGGGACAGAAACTCGAAGGAACT
GAGAATATTGAGGTAGTCAGTGTACCTTTGAACCGAATGGAAGAGGCGTT
GGACCATATGATCGAGACGGAAGGTGTTGTGGTCATGCATGCTGTCTCAA
CCCTTTCAGTCGGACTCCGGCTGGGGTTGTCGCCGCGGTAA
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