Ggra2475.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra2475.t1
Unique Name	Ggra2475.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	556

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000005_pilon	contig	tig00000005_pilon:425736..427403 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005707609.1
PFAMs	PP2C
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K14803,ko:K17506
Evalue	1.48e-43
EggNOG OGs	COG0631@1\|root,KOG0698@2759\|Eukaryota
EC	3.1.3.16
Description	protein serine/threonine phosphatase activity
COG category	T
BRITE	ko00000,ko01000,ko01009,ko03009

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra2475	Ggra2475	Gracilaria gracilis GNS1m male	gene	tig00000005_pilon 425736..427403 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2475.t1.stop1	Ggra2475.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000005_pilon 425736..425738 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2475.t1.CDS1	Ggra2475.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000005_pilon 425736..427403 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2475.t1.exon1	Ggra2475.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000005_pilon 425736..427403 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2475.t1.start1	Ggra2475.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000005_pilon 427401..427403 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2475.t1	Ggra2475.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000005_pilon 425736..427403 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000005_pilon:425736..427403-
coding sequence from alignment at tig00000005_pilon:425736..427403-

mRNA sequence

>Ggra2475.t1 ID=Ggra2475.t1|Name=Ggra2475.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=556bp
MSRERSKHRRHLLYDDPVECGIFSASKSRRVPDETRTVSEVHRTPIQVAT
YGIFAGHGGVAAAELCARNFVPTLLTDSVLKRDPESAIRNACQALEAFVL
AKSALDRAYYGTTLLFTMIRGQDLYIANIGNSRAVLATKDGAQAITQEHD
GSNAEEVSRVTNAGGYFQDGKVNNLVPITRSIGDLELKDRKHITFPNRRM
TEDIIISVPDIYQRKLSSRDEFLVMATAEVWENLSNNVVVQTIRDSLRRG
DTPRMASKRVVQAAASAGAKHYITVMILVFPTSTRGVHDKPAAPVSGRRG
SRPSSLKRHSSNAEQELLAMKNATQVPAFVLAARAQEQNRTAIQNSIPES
SPITSPSAQALRSPITSTGVEYKNENQFASAPYLSLNRSAGSASSRIAYR
QKQNESEGLPAKQGASRHRSRGGVNRGHTVLGTTVAGQNGESAPRRHREV
TRPPPVVIEHRRQRERDHAMSPRAKTVMTSRISELTASGATMGRDSSHGF
EEQTHGTGKPFDDAPGLADFNSAGPSKVRYREDGTVHGSRFGFWRELGRT
FGRRR*

spliced messenger RNA

>Ggra2475.t1 ID=Ggra2475.t1|Name=Ggra2475.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1668bp|location=Sequence derived from alignment at tig00000005_pilon:425736..427403- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGTCGCGAGAGATCGAAGCATCGTCGCCATTTGTTGTATGATGATCC
CGTAGAATGTGGGATATTCTCAGCCTCAAAGAGCAGAAGAGTTCCAGATG
AAACACGCACAGTATCTGAAGTTCATCGCACTCCAATTCAAGTTGCAACA
TATGGAATCTTTGCTGGGCATGGTGGCGTAGCGGCGGCGGAGTTATGTGC
CCGAAACTTTGTGCCTACATTACTAACAGATTCTGTGCTGAAAAGGGACC
CTGAGTCAGCCATCCGCAATGCATGCCAAGCCTTAGAAGCTTTTGTGTTA
GCAAAGTCAGCTCTTGATCGCGCGTATTATGGAACAACCTTGTTGTTCAC
CATGATTCGAGGTCAGGATCTCTATATTGCGAACATAGGAAACTCCCGAG
CGGTTCTTGCGACAAAGGACGGGGCTCAGGCCATCACGCAAGAACATGAT
GGATCAAATGCCGAAGAAGTGTCAAGAGTGACCAATGCTGGGGGTTACTT
TCAAGATGGGAAGGTCAACAACCTTGTTCCTATTACACGATCTATCGGAG
ATCTTGAGCTAAAGGACAGGAAGCACATTACGTTTCCTAACCGAAGAATG
ACGGAGGACATCATAATTTCTGTGCCAGACATATACCAGCGTAAGCTTTC
GTCGCGAGATGAGTTCCTCGTTATGGCTACAGCCGAAGTGTGGGAGAACT
TGTCCAACAATGTGGTTGTGCAAACTATCAGAGACTCCCTACGACGTGGA
GATACCCCAAGAATGGCGTCGAAACGGGTTGTACAAGCCGCCGCCTCAGC
AGGTGCCAAGCATTATATTACGGTTATGATTCTTGTATTTCCTACATCAA
CCAGAGGGGTTCATGACAAGCCTGCAGCACCAGTAAGTGGCAGACGCGGA
TCGCGGCCGAGCTCCCTAAAGAGACATAGCTCAAACGCTGAACAAGAGCT
GCTAGCCATGAAAAATGCGACCCAAGTTCCTGCGTTCGTCTTGGCGGCTC
GAGCACAGGAACAAAACCGCACCGCCATACAAAACTCAATACCGGAGTCT
TCGCCAATAACGTCACCTTCTGCTCAAGCTCTGAGAAGTCCCATCACTTC
GACCGGTGTTGAGTACAAGAATGAAAACCAGTTCGCATCAGCACCATATC
TTTCTCTCAACAGGTCAGCTGGGTCAGCGAGCAGTCGCATTGCTTATCGA
CAGAAGCAAAATGAATCAGAGGGGTTGCCTGCCAAACAGGGAGCATCCCG
GCACCGTTCACGGGGTGGAGTGAACAGAGGTCACACAGTTCTAGGAACAA
CCGTTGCTGGACAAAATGGCGAGTCAGCACCACGAAGACATCGGGAAGTG
ACGAGGCCTCCTCCTGTGGTGATCGAACACCGCAGGCAAAGAGAGCGAGA
TCACGCCATGTCCCCACGGGCAAAGACAGTTATGACCTCAAGAATCTCAG
AACTCACAGCAAGTGGGGCAACCATGGGAAGGGACTCTTCACATGGATTT
GAAGAGCAAACGCATGGCACGGGAAAGCCATTCGATGATGCTCCCGGATT
AGCAGATTTCAATAGTGCTGGGCCCTCTAAGGTACGATATCGAGAAGATG
GCACAGTTCATGGAAGTCGTTTTGGATTCTGGAGGGAGCTAGGAAGAACT
TTTGGGAGACGAAGATGA

protein sequence of Ggra2475.t1

>Ggra2475.t1 ID=Ggra2475.t1|Name=Ggra2475.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=556bp
MSRERSKHRRHLLYDDPVECGIFSASKSRRVPDETRTVSEVHRTPIQVAT
YGIFAGHGGVAAAELCARNFVPTLLTDSVLKRDPESAIRNACQALEAFVL
AKSALDRAYYGTTLLFTMIRGQDLYIANIGNSRAVLATKDGAQAITQEHD
GSNAEEVSRVTNAGGYFQDGKVNNLVPITRSIGDLELKDRKHITFPNRRM
TEDIIISVPDIYQRKLSSRDEFLVMATAEVWENLSNNVVVQTIRDSLRRG
DTPRMASKRVVQAAASAGAKHYITVMILVFPTSTRGVHDKPAAPVSGRRG
SRPSSLKRHSSNAEQELLAMKNATQVPAFVLAARAQEQNRTAIQNSIPES
SPITSPSAQALRSPITSTGVEYKNENQFASAPYLSLNRSAGSASSRIAYR
QKQNESEGLPAKQGASRHRSRGGVNRGHTVLGTTVAGQNGESAPRRHREV
TRPPPVVIEHRRQRERDHAMSPRAKTVMTSRISELTASGATMGRDSSHGF
EEQTHGTGKPFDDAPGLADFNSAGPSKVRYREDGTVHGSRFGFWRELGRT
FGRRR*

mRNA from alignment at tig00000005_pilon:425736..427403-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra2475.t1 ID=Ggra2475.t1|Name=Ggra2475.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1668bp|location=Sequence derived from alignment at tig00000005_pilon:425736..427403- (Gracilaria gracilis GNS1m male)
ATGAGTCGCGAGAGATCGAAGCATCGTCGCCATTTGTTGTATGATGATCC
CGTAGAATGTGGGATATTCTCAGCCTCAAAGAGCAGAAGAGTTCCAGATG
AAACACGCACAGTATCTGAAGTTCATCGCACTCCAATTCAAGTTGCAACA
TATGGAATCTTTGCTGGGCATGGTGGCGTAGCGGCGGCGGAGTTATGTGC
CCGAAACTTTGTGCCTACATTACTAACAGATTCTGTGCTGAAAAGGGACC
CTGAGTCAGCCATCCGCAATGCATGCCAAGCCTTAGAAGCTTTTGTGTTA
GCAAAGTCAGCTCTTGATCGCGCGTATTATGGAACAACCTTGTTGTTCAC
CATGATTCGAGGTCAGGATCTCTATATTGCGAACATAGGAAACTCCCGAG
CGGTTCTTGCGACAAAGGACGGGGCTCAGGCCATCACGCAAGAACATGAT
GGATCAAATGCCGAAGAAGTGTCAAGAGTGACCAATGCTGGGGGTTACTT
TCAAGATGGGAAGGTCAACAACCTTGTTCCTATTACACGATCTATCGGAG
ATCTTGAGCTAAAGGACAGGAAGCACATTACGTTTCCTAACCGAAGAATG
ACGGAGGACATCATAATTTCTGTGCCAGACATATACCAGCGTAAGCTTTC
GTCGCGAGATGAGTTCCTCGTTATGGCTACAGCCGAAGTGTGGGAGAACT
TGTCCAACAATGTGGTTGTGCAAACTATCAGAGACTCCCTACGACGTGGA
GATACCCCAAGAATGGCGTCGAAACGGGTTGTACAAGCCGCCGCCTCAGC
AGGTGCCAAGCATTATATTACGGTTATGATTCTTGTATTTCCTACATCAA
CCAGAGGGGTTCATGACAAGCCTGCAGCACCAGTAAGTGGCAGACGCGGA
TCGCGGCCGAGCTCCCTAAAGAGACATAGCTCAAACGCTGAACAAGAGCT
GCTAGCCATGAAAAATGCGACCCAAGTTCCTGCGTTCGTCTTGGCGGCTC
GAGCACAGGAACAAAACCGCACCGCCATACAAAACTCAATACCGGAGTCT
TCGCCAATAACGTCACCTTCTGCTCAAGCTCTGAGAAGTCCCATCACTTC
GACCGGTGTTGAGTACAAGAATGAAAACCAGTTCGCATCAGCACCATATC
TTTCTCTCAACAGGTCAGCTGGGTCAGCGAGCAGTCGCATTGCTTATCGA
CAGAAGCAAAATGAATCAGAGGGGTTGCCTGCCAAACAGGGAGCATCCCG
GCACCGTTCACGGGGTGGAGTGAACAGAGGTCACACAGTTCTAGGAACAA
CCGTTGCTGGACAAAATGGCGAGTCAGCACCACGAAGACATCGGGAAGTG
ACGAGGCCTCCTCCTGTGGTGATCGAACACCGCAGGCAAAGAGAGCGAGA
TCACGCCATGTCCCCACGGGCAAAGACAGTTATGACCTCAAGAATCTCAG
AACTCACAGCAAGTGGGGCAACCATGGGAAGGGACTCTTCACATGGATTT
GAAGAGCAAACGCATGGCACGGGAAAGCCATTCGATGATGCTCCCGGATT
AGCAGATTTCAATAGTGCTGGGCCCTCTAAGGTACGATATCGAGAAGATG
GCACAGTTCATGGAAGTCGTTTTGGATTCTGGAGGGAGCTAGGAAGAACT
TTTGGGAGACGAAGATGA

Coding sequence (CDS) from alignment at tig00000005_pilon:425736..427403-

>Ggra2475.t1 ID=Ggra2475.t1|Name=Ggra2475.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1668bp|location=Sequence derived from alignment at tig00000005_pilon:425736..427403- (Gracilaria gracilis GNS1m male)
ATGAGTCGCGAGAGATCGAAGCATCGTCGCCATTTGTTGTATGATGATCC
CGTAGAATGTGGGATATTCTCAGCCTCAAAGAGCAGAAGAGTTCCAGATG
AAACACGCACAGTATCTGAAGTTCATCGCACTCCAATTCAAGTTGCAACA
TATGGAATCTTTGCTGGGCATGGTGGCGTAGCGGCGGCGGAGTTATGTGC
CCGAAACTTTGTGCCTACATTACTAACAGATTCTGTGCTGAAAAGGGACC
CTGAGTCAGCCATCCGCAATGCATGCCAAGCCTTAGAAGCTTTTGTGTTA
GCAAAGTCAGCTCTTGATCGCGCGTATTATGGAACAACCTTGTTGTTCAC
CATGATTCGAGGTCAGGATCTCTATATTGCGAACATAGGAAACTCCCGAG
CGGTTCTTGCGACAAAGGACGGGGCTCAGGCCATCACGCAAGAACATGAT
GGATCAAATGCCGAAGAAGTGTCAAGAGTGACCAATGCTGGGGGTTACTT
TCAAGATGGGAAGGTCAACAACCTTGTTCCTATTACACGATCTATCGGAG
ATCTTGAGCTAAAGGACAGGAAGCACATTACGTTTCCTAACCGAAGAATG
ACGGAGGACATCATAATTTCTGTGCCAGACATATACCAGCGTAAGCTTTC
GTCGCGAGATGAGTTCCTCGTTATGGCTACAGCCGAAGTGTGGGAGAACT
TGTCCAACAATGTGGTTGTGCAAACTATCAGAGACTCCCTACGACGTGGA
GATACCCCAAGAATGGCGTCGAAACGGGTTGTACAAGCCGCCGCCTCAGC
AGGTGCCAAGCATTATATTACGGTTATGATTCTTGTATTTCCTACATCAA
CCAGAGGGGTTCATGACAAGCCTGCAGCACCAGTAAGTGGCAGACGCGGA
TCGCGGCCGAGCTCCCTAAAGAGACATAGCTCAAACGCTGAACAAGAGCT
GCTAGCCATGAAAAATGCGACCCAAGTTCCTGCGTTCGTCTTGGCGGCTC
GAGCACAGGAACAAAACCGCACCGCCATACAAAACTCAATACCGGAGTCT
TCGCCAATAACGTCACCTTCTGCTCAAGCTCTGAGAAGTCCCATCACTTC
GACCGGTGTTGAGTACAAGAATGAAAACCAGTTCGCATCAGCACCATATC
TTTCTCTCAACAGGTCAGCTGGGTCAGCGAGCAGTCGCATTGCTTATCGA
CAGAAGCAAAATGAATCAGAGGGGTTGCCTGCCAAACAGGGAGCATCCCG
GCACCGTTCACGGGGTGGAGTGAACAGAGGTCACACAGTTCTAGGAACAA
CCGTTGCTGGACAAAATGGCGAGTCAGCACCACGAAGACATCGGGAAGTG
ACGAGGCCTCCTCCTGTGGTGATCGAACACCGCAGGCAAAGAGAGCGAGA
TCACGCCATGTCCCCACGGGCAAAGACAGTTATGACCTCAAGAATCTCAG
AACTCACAGCAAGTGGGGCAACCATGGGAAGGGACTCTTCACATGGATTT
GAAGAGCAAACGCATGGCACGGGAAAGCCATTCGATGATGCTCCCGGATT
AGCAGATTTCAATAGTGCTGGGCCCTCTAAGGTACGATATCGAGAAGATG
GCACAGTTCATGGAAGTCGTTTTGGATTCTGGAGGGAGCTAGGAAGAACT
TTTGGGAGACGAAGATGA